{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.5.18/source/refseq_protein_all_10090.gpff",
                    "filename": "refseq_protein_all_10090.gpff"
                }
            },
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_xref_refseq.csv",
                    "filename": "mouse_protein_xref_refseq.csv"
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            }
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        "output_subdomain": [
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                "mediatype": "csv",
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_proteinnames_refseq.csv",
                    "filename": "mouse_protein_proteinnames_refseq.csv"
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                "mediatype": "csv",
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    "extension_domain": [
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            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Mus musculus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Protein Names",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
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                ]
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    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Mouse Protein Names (NCBI RefSeq)",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            }
        ],
        "created": "2020-03-15T13:29:07.339002",
        "modified": "2020-03-16T11:18:46.916940",
        "version": "v-1.5.18"
    },
    "description_domain": {
        "keywords": [
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            "NCBI RefSeq"
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        "pipeline_steps": [
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                "name": "make-protein-dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.5.18/reviewed/mouse_protein_xref_refseq.csv",
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                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.5.18/source/refseq_protein_all_10090.gpff",
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                    }
                ],
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                        "filename": "mouse_protein_info_refseq.csv"
                    }
                ],
                "prerequisite": [],
                "description": "The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
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                "name": "Python",
                "uri": {
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                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {},
        "emperical_error": {}
    },
    "parametric_domain": [
        {
            "step": "",
            "value": "",
            "param": ""
        }
    ],
    "usability_domain": [
        "The Mouse Protein Names (NCBI RefSeq) dataset contains mouse [taxid:10090] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database.  The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen"
    ],
    "etag": "6f65c65377572b933807f4b5c4fbdf6b",
    "_id": {
        "$oid": "5e6e65e3f5c47b5db704d5fd"
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}