{ "bcoid": "GLY_000235", "title": "Mouse Protein Citations (RefSeq)", "description": "The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped ...", "filename": "mouse_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Mus Musculus", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A0A0B4J1F4-1...", "19605364..." ], [ "Q9JMG3-1...", "24240191..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "A0A0B4J1F4-1", "19605364", "Thioredoxin-independent regulation of metabolism by the alpha-arrestin proteins.", "The Journal of biological chemistry", "2009 Sep 11", "Patwari P, Chutkow WA, Cummings K, Verstraeten VL, Lammerding J, Schreiter ER, Lee RT" ], [ "Q9JMG3-1", "24240191", "Different functions of HOPS isoforms in the cell: HOPS shuttling isoform is determined by RIP cleavage system.", "Cell cycle (Georgetown, Tex.)", "2014", "Castelli M, Piobbico D, Bartoli D, Pieroni S, Brunacci C, Bellet MM, Chiacchiaretta M, Della Fazia MA, Servillo G" ], [ "Q9JMG3-1", "22890319", "Hepatocyte odd protein shuttling (HOPS) is a bridging protein in the nucleophosmin-p19 Arf network.", "Oncogene", "2013 Jul 11", "Castelli M, Pieroni S, Brunacci C, Piobbico D, Bartoli D, Bellet MM, Colombo E, Pelicci PG, Della Fazia MA, Servillo G" ], [ "Q9JMG3-1", "20582322", "Transmembrane and ubiquitin-like domain containing 1 (Tmub1) regulates locomotor activity and wakefulness in mice and interacts with CAMLG.", "PloS one", "2010 Jun 22", "Zhang W, Savelieva KV, Suwanichkul A, Small DL, Kirkpatrick LL, Xu N, Lanthorn TH, Ye GL" ], [ "Q9JMG3-1", "18665261", "Transmembrane and ubiquitin-like domain-containing protein 1 (Tmub1/HOPS) facilitates surface expression of GluR2-containing AMPA receptors.", "PloS one", "2008 Jul 30", "Yang H, Takagi H, Konishi Y, Ageta H, Ikegami K, Yao I, Sato S, Hatanaka K, Inokuchi K, Seog DH, Setou M" ], [ "Q9JMG3-1", "18418082", "HOPS is an essential constituent of centrosome assembly.", "Cell cycle (Georgetown, Tex.)", "2008 May 15", "Pieroni S, Della Fazia MA, Castelli M, Piobbico D, Bartoli D, Brunacci C, Bellet MM, Viola-Magni M, Servillo G" ], [ "Q9DCN2-1", "20927338", "Crystal structure of a complex between amino and carboxy terminal fragments of mDia1: insights into autoinhibition of diaphanous-related formins.", "PloS one", "2010 Sep 30", "Nezami A, Poy F, Toms A, Zheng W, Eck MJ" ], [ "Q9DCN2-1", "20566685", "Adenomatous polyposis coli protein nucleates actin assembly and synergizes with the formin mDia1.", "The Journal of cell biology", "2010 Jun 28", "Okada K, Bartolini F, Deaconescu AM, Moseley JB, Dogic Z, Grigorieff N, Gundersen GG, Goode BL" ], [ "Q60972-1", "30026490", "Armadillo repeat containing 12 promotes neuroblastoma progression through interaction with retinoblastoma binding protein 4.", "Nature communications", "2018 Jul 19", "Li D, Song H, Mei H, Fang E, Wang X, Yang F, Li H, Chen Y, Huang K, Zheng L, Tong Q" ], [ "Q9JHF7-1", "30161143", "Augmented Pla2g4c/Ptgs2/Hpgds axis in bronchial smooth muscle tissues of experimental asthma.", "PloS one", "2018", "Chiba Y, Suto W, Sakai H" ], [ "Q08652-1", "27537484", "How to Make an Active Zone: Unexpected Universal Functional Redundancy between RIMs and RIM-BPs.", "Neuron", "2016 Aug 17", "Acuna C, Liu X, Sudhof TC" ], [ "O88845-1", "17485678", "Gene-trapped mouse embryonic stem cell-derived cardiac myocytes and human genetics implicate AKAP10 in heart rhythm regulation.", "Proceedings of the National Academy of Sciences of the United States of America", "2007 May 15", "Tingley WG, Pawlikowska L, Zaroff JG, Kim T, Nguyen T, Young SG, Vranizan K, Kwok PY, Whooley MA, Conklin BR" ], [ "O88845-1", "14531807", "PDZK1: II. an anchoring site for the PKA-binding protein D-AKAP2 in renal proximal tubular cells.", "Kidney international", "2003 Nov", "Gisler SM, Madjdpour C, Bacic D, Pribanic S, Taylor SS, Biber J, Murer H" ], [ "O88845-1", "12206784", "Domain organization of D-AKAP2 revealed by enhanced deuterium exchange-mass spectrometry (DXMS).", "Journal of molecular biology", "2002 Aug 23", "Hamuro Y, Burns L, Canaves J, Hoffman R, Taylor S, Woods V" ], [ "Q8BXR6-1", "26310831", "Pellino-3 promotes endotoxin tolerance and acts as a negative regulator of TLR2 and TLR4 signaling.", "Journal of leukocyte biology", "2015 Dec", "Murphy MB, Xiong Y, Pattabiraman G, Manavalan TT, Qiu F, Medvedev AE" ], [ "Q8BXR6-1", "23892723", "Pellino3 ubiquitinates RIP2 and mediates Nod2-induced signaling and protective effects in colitis.", "Nature immunology", "2013 Sep", "Yang S, Wang B, Humphries F, Jackson R, Healy ME, Bergin R, Aviello G, Hall B, McNamara D, Darby T, Quinlan A, Shanahan F, Melgar S, Fallon PG, Moynagh PN" ], [ "Q8BSN9-1", "20869947", "Fast kinase domain-containing protein 3 is a mitochondrial protein essential for cellular respiration.", "Biochemical and biophysical research communications", "2010 Oct 22", "Simarro M, Gimenez-Cassina A, Kedersha N, Lazaro JB, Adelmant GO, Marto JA, Rhee K, Tisdale S, Danial N, Benarafa C, Orduna A, Anderson P" ], [ "Q3UFT3-1", "24003223", "A brain-specific Grb2-associated regulator of extracellular signal-regulated kinase (Erk)/mitogen-activated protein kinase (MAPK) (GAREM) subtype, GAREM2, contributes to neurite outgrowth of neuroblastoma cells by regulating Erk signaling.", "The Journal of biological chemistry", "2013 Oct 11", "Taniguchi T, Tanaka S, Ishii A, Watanabe M, Fujitani N, Sugeo A, Gotoh S, Ohta T, Hiyoshi M, Matsuzaki H, Sakai N, Konishi H" ], [ "Q8CIT9-1", "25283635", "Suprabasin as a novel tumor endothelial cell marker.", "Cancer science", "2014 Dec", "Alam MT, Nagao-Kitamoto H, Ohga N, Akiyama K, Maishi N, Kawamoto T, Shinohara N, Taketomi A, Shindoh M, Hida Y, Hida K" ], [ "Q8CIT9-1", "17330888", "Transcriptional profiling of developing mouse epidermis reveals novel patterns of coordinated gene expression.", "Developmental dynamics : an official publication of the American Association of Anatomists", "2007 Apr", "Bazzi H, Fantauzzo KA, Richardson GD, Jahoda CA, Christiano AM" ], [ "Q571F8-1", "22679499", "Mammalian glutaminase Gls2 gene encodes two functional alternative transcripts by a surrogate promoter usage mechanism.", "PloS one", "2012", "Martin-Rufian M, Tosina M, Campos-Sandoval JA, Manzanares E, Lobo C, Segura JA, Alonso FJ, Mates JM, Marquez J" ], [ "Q571F8-1", "20351271", "Phosphate-activated glutaminase (GLS2), a p53-inducible regulator of glutamine metabolism and reactive oxygen species.", "Proceedings of the National Academy of Sciences of the United States of America", "2010 Apr 20", "Suzuki S, Tanaka T, Poyurovsky MV, Nagano H, Mayama T, Ohkubo S, Lokshin M, Hosokawa H, Nakayama T, Suzuki Y, Sugano S, Sato E, Nagao T, Yokote K, Tatsuno I, Prives C" ], [ "P40237-1", "29760437", "CD82 hypomethylation is essential for tuberculosis pathogenesis via regulation of RUNX1-Rab5/22.", "Experimental & molecular medicine", "2018 May 14", "Koh HJ, Kim YR, Kim JS, Yun JS, Kim S, Kim SY, Jang K, Yang CS" ], [ "Q149C2-1", "19253336", "Characterization of mouse IFT complex B.", "Cell motility and the cytoskeleton", "2009 Aug", "Follit JA, Xu F, Keady BT, Pazour GJ" ], [ "Q9QZR5-1", "29277937", "Effects of Y361-auto-phosphorylation on structural plasticity of the HIPK2 kinase domain.", "Protein science : a publication of the Protein Society", "2018 Mar", "Scaglione A, Monteonofrio L, Parisi G, Cecchetti C, Siepi F, Rinaldo C, Giorgi A, Verzili D, Zamparelli C, Savino C, Soddu S, Vallone B, Montemiglio LC" ], [ "Q9QZR5-1", "28786753", "Circular RNA HIPK2 regulates astrocyte activation via cooperation of autophagy and ER stress by targeting MIR124-2HG.", "Autophagy", "2017 Oct 3", "Huang R, Zhang Y, Han B, Bai Y, Zhou R, Gan G, Chao J, Hu G, Yao H" ], [ "J3QNX5-1", "26623514", "Auxiliary subunits of the CKAMP family differentially modulate AMPA receptor properties.", "eLife", "2015 Dec 1", "Farrow P, Khodosevich K, Sapir Y, Schulmann A, Aslam M, Stern-Bach Y, Monyer H, von Engelhardt J" ], [ "Q6PAV2-1", "26825710", "The ubiquitin ligase HERC4 mediates c-Maf ubiquitination and delays the growth of multiple myeloma xenografts in nude mice.", "Blood", "2016 Mar 31", "Zhang Z, Tong J, Tang X, Juan J, Cao B, Hurren R, Chen G, Taylor P, Xu X, Shi CX, Du J, Hou J, Wang G, Wu D, Stewart AK, Schimmer AD, Moran MF, Mao X" ], [ "Q6PAV2-1", "17967448", "Disruption of the ubiquitin ligase HERC4 causes defects in spermatozoon maturation and impaired fertility.", "Developmental biology", "2007 Dec 15", "Rodriguez CI, Stewart CL" ], [ "Q61789-1", "27729280", "Targeted Disruption of the Lama3 Gene in Adult Mice Is Sufficient to Induce Skin Inflammation and Fibrosis.", "The Journal of investigative dermatology", "2017 Feb", "Pesch M, Konig S, Aumailley M" ], [ "Q80WP8-1", "26327310", "Mammalian CSAD and GADL1 have distinct biochemical properties and patterns of brain expression.", "Neurochemistry international", "2015 Nov", "Winge I, Teigen K, Fossbakk A, Mahootchi E, Kleppe R, Skoldberg F, Kampe O, Haavik J" ], [ "Q80WP8-1", "23038267", "Role of glutamate decarboxylase-like protein 1 (GADL1) in taurine biosynthesis.", "The Journal of biological chemistry", "2012 Nov 30", "Liu P, Ge X, Ding H, Jiang H, Christensen BM, Li J" ], [ "Q32M07-1", "24740601", "Adenine nucleotide metabolism and a role for AMP in modulating flagellar waveforms in mouse sperm.", "Biology of reproduction", "2014 Jun", "Vadnais ML, Cao W, Aghajanian HK, Haig-Ladewig L, Lin AM, Al-Alao O, Gerton GL" ], [ "Q32M07-1", "21746835", "Congenital hydrocephalus in genetically engineered mice.", "Veterinary pathology", "2012 Jan", "Vogel P, Read RW, Hansen GM, Payne BJ, Small D, Sands AT, Zambrowicz BP" ], [ "Q8K3W0-2", "28436570", "Bre Enhances Osteoblastic Differentiation by Promoting the Mdm2-Mediated Degradation of p53.", "Stem cells (Dayton, Ohio)", "2017 Jul", "Jin F, Wang Y, Wang X, Wu Y, Wang X, Liu Q, Zhu Y, Liu E, Fan J, Wang Y" ], [ "Q8K3W0-2", "27001068", "BRE plays an essential role in preventing replicative and DNA damage-induced premature senescence.", "Scientific reports", "2016 Mar 22", "Shi W, Tang MK, Yao Y, Tang C, Chui YL, Lee KKH" ], [ "Q8K3W0-2", "24395041", "Anti-apoptotic protein BRE/BRCC45 attenuates apoptosis through maintaining the expression of caspase inhibitor XIAP in mouse Lewis lung carcinoma D122 cells.", "Apoptosis : an international journal on programmed cell death", "2014 May", "Chui YL, Ma CH, Li W, Xu Z, Yao Y, Lin FK, Chan JY, Lee KK" ], [ "Q8K3W0-2", "14565866", "Expression of a conserved mouse stress-modulating gene, Bre: comparison with the human ortholog.", "DNA and cell biology", "2003 Aug", "Ching AK, Li Q, Lim PL, Chan JY, Chui YL" ], [ "Q9DB75-1", "24139803", "CDIP1-BAP31 complex transduces apoptotic signals from endoplasmic reticulum to mitochondria under endoplasmic reticulum stress.", "Cell reports", "2013 Oct 31", "Namba T, Tian F, Chu K, Hwang SY, Yoon KW, Byun S, Hiraki M, Mandinova A, Lee SW" ], [ "Q91V88-1", "28842827", "Nephronectin is Decreased in Metastatic Breast Carcinoma and Related to Metastatic Organs.", "Pathology oncology research : POR", "2018 Jul", "Dilmac S, Erin N, Demir N, Tanriover G" ], [ "Q91V88-1", "28345658", "Nephronectin plays critical roles in Sox2 expression and proliferation in dental epithelial stem cells via EGF-like repeat domains.", "Scientific reports", "2017 Mar 27", "Arai C, Yoshizaki K, Miyazaki K, Saito K, Yamada A, Han X, Funada K, Fukumoto E, Haruyama N, Iwamoto T, Takahashi I, Fukumoto S" ], [ "Q91V88-1", "17537792", "The ECM protein nephronectin promotes kidney development via integrin alpha8beta1-mediated stimulation of Gdnf expression.", "Development (Cambridge, England)", "2007 Jul", "Linton JM, Martin GR, Reichardt LF" ], [ "Q9Z1Z2-1", "30138317", "Strap associates with Csde1 and affects expression of select Csde1-bound transcripts.", "PloS one", "2018", "Moore KS, Yagci N, van Alphen F, Meijer AB, 't Hoen PAC, von Lindern M" ], [ "Q8K1E6-1", "26930515", "Roles of Aag, Alkbh2, and Alkbh3 in the Repair of Carboxymethylated and Ethylated Thymidine Lesions.", "ACS chemical biology", "2016 May 20", "You C, Wang P, Nay SL, Wang J, Dai X, O'Connor TR, Wang Y" ], [ "Q9JM52-1", "28400474", "Suppression of Th17 cell differentiation by misshapen/NIK-related kinase MINK1.", "The Journal of experimental medicine", "2017 May 1", "Fu G, Xu Q, Qiu Y, Jin X, Xu T, Dong S, Wang J, Ke Y, Hu H, Cao X, Wang D, Cantor H, Gao X, Lu L" ], [ "Q9JM52-1", "27631493", "Loss of the Greatwall Kinase Weakens the Spindle Assembly Checkpoint.", "PLoS genetics", "2016 Sep", "Diril MK, Bisteau X, Kitagawa M, Caldez MJ, Wee S, Gunaratne J, Lee SH, Kaldis P" ], [ "Q9JM52-1", "26598717", "Misshapen/NIK-related kinase (MINK1) is involved in platelet function, hemostasis, and thrombus formation.", "Blood", "2016 Feb 18", "Yue M, Luo D, Yu S, Liu P, Zhou Q, Hu M, Liu Y, Wang S, Huang Q, Niu Y, Lu L, Hu H" ], [ "P05208-1", "20179351", "Elastase 2 is expressed in human and mouse epidermis and impairs skin barrier function in Netherton syndrome through filaggrin and lipid misprocessing.", "The Journal of clinical investigation", "2010 Mar", "Bonnart C, Deraison C, Lacroix M, Uchida Y, Besson C, Robin A, Briot A, Gonthier M, Lamant L, Dubus P, Monsarrat B, Hovnanian A" ], [ "Q9DCL2-1", "22683786", "The mammalian DUF59 protein Fam96a forms two distinct types of domain-swapped dimer.", "Acta crystallographica. Section D, Biological crystallography", "2012 Jun", "Chen KE, Richards AA, Ariffin JK, Ross IL, Sweet MJ, Kellie S, Kobe B, Martin JL" ], [ "Q8BGC0-1", "24352707", "Effects of chronic HIV-1 Tat exposure in the CNS: heightened vulnerability of males versus females to changes in cell numbers, synaptic integrity, and behavior.", "Brain structure & function", "2015 Mar", "Hahn YK, Podhaizer EM, Farris SP, Miles MF, Hauser KF, Knapp PE" ], [ "Q8BGC0-1", "15485897", "FF domains of CA150 bind transcription and splicing factors through multiple weak interactions.", "Molecular and cellular biology", "2004 Nov", "Smith MJ, Kulkarni S, Pawson T" ], [ "Q61097-1", "28003362", "Phosphorylation of Rap1 by cAMP-dependent Protein Kinase (PKA) Creates a Binding Site for KSR to Sustain ERK Activation by cAMP.", "The Journal of biological chemistry", "2017 Jan 27", "Takahashi M, Li Y, Dillon TJ, Stork PJ" ], [ "Q8CEC0-1", "18621024", "Tumor marker nucleoporin 88 kDa regulates nucleocytoplasmic transport of NF-kappaB.", "Biochemical and biophysical research communications", "2008 Sep 26", "Takahashi N, van Kilsdonk JW, Ostendorf B, Smeets R, Bruggeman SW, Alonso A, van de Loo F, Schneider M, van den Berg WB, Swart GW" ], [ "Q8CEC0-1", "18606815", "Nucleoporin 88 (Nup88) is regulated by hypertonic stress in kidney cells to retain the transcription factor tonicity enhancer-binding protein (TonEBP) in the nucleus.", "The Journal of biological chemistry", "2008 Sep 5", "Andres-Hernando A, Lanaspa MA, Rivard CJ, Berl T" ], [ "Q9QYS9-1", "30628007", "Identification of Novel Binding Partners for Transcription Factor Emx2.", "The protein journal", "2019 Feb", "Groves JA, Gillman C, DeLay CN, Kroll TT" ], [ "Q9QYS9-1", "29021242", "Autogenous cross-regulation of Quaking mRNA processing and translation balances Quaking functions in splicing and translation.", "Genes & development", "2017 Sep 15", "Fagg WS, Liu N, Fair JH, Shiue L, Katzman S, Donohue JP, Ares M Jr" ], [ "Q9QYS9-1", "29021239", "An RNA-binding protein, Qki5, regulates embryonic neural stem cells through pre-mRNA processing in cell adhesion signaling.", "Genes & development", "2017 Sep 15", "Hayakawa-Yano Y, Suyama S, Nogami M, Yugami M, Koya I, Furukawa T, Zhou L, Abe M, Sakimura K, Takebayashi H, Nakanishi A, Okano H, Yano M" ], [ "P27090-1", "30598510", "TGF-beta2 uses the concave surface of its extended finger region to bind betaglycan's ZP domain via three residues specific to TGF-beta and inhibin-alpha.", "The Journal of biological chemistry", "2019 Mar 1", "Henen MA, Mahlawat P, Zwieb C, Kodali RB, Hinck CS, Hanna RD, Krzysiak TC, Ilangovan U, Cano KE, Hinck G, Vonberg M, McCabe M, Hinck AP" ], [ "Q8BN59-1", "21387291", "The novel lupus antigen related protein acheron enhances the development of human breast cancer.", "International journal of cancer", "2012 Feb 1", "Shao R, Scully SJ Jr, Yan W, Bentley B, Mueller J, Brown C, Bigelow C, Schwartz LM" ], [ "Q8BN59-1", "17383118", "Acheron, a novel member of the Lupus Antigen family, is induced during the programmed cell death of skeletal muscles in the moth Manduca sexta.", "Gene", "2007 May 15", "Valavanis C, Wang Z, Sun D, Vaine M, Schwartz LM" ], [ "Q0KK59-1", "21040849", "Extracellular calcium controls background current and neuronal excitability via an UNC79-UNC80-NALCN cation channel complex.", "Neuron", "2010 Nov 4", "Lu B, Zhang Q, Wang H, Wang Y, Nakayama M, Ren D" ], [ "Q924X1-1", "15611079", "Epigen, the last ligand of ErbB receptors, reveals intricate relationships between affinity and mitogenicity.", "The Journal of biological chemistry", "2005 Mar 4", "Kochupurakkal BS, Harari D, Di-Segni A, Maik-Rachline G, Lyass L, Gur G, Kerber G, Citri A, Lavi S, Eilam R, Chalifa-Caspi V, Eshhar Z, Pikarsky E, Pinkas-Kramarski R, Bacus SS, Yarden Y" ], [ "Q3UHN9-1", "29688404", "Heparan Sulfate Proteoglycan Sulfation Regulates Uterine Differentiation and Signaling During Embryo Implantation.", "Endocrinology", "2018 Jun 1", "Yin Y, Wang A, Feng L, Wang Y, Zhang H, Zhang I, Bany BM, Ma L" ], [ "Q3UHN9-1", "29330473", "Endothelial heparan sulfate deficiency reduces inflammation and fibrosis in murine diabetic nephropathy.", "Laboratory investigation; a journal of technical methods and pathology", "2018 Apr", "Talsma DT, Katta K, Ettema MAB, Kel B, Kusche-Gullberg M, Daha MR, Stegeman CA, van den Born J, Wang L" ], [ "Q80X50-1", "25185265", "UBAP2L is a novel BMI1-interacting protein essential for hematopoietic stem cell activity.", "Blood", "2014 Oct 9", "Bordeleau ME, Aucagne R, Chagraoui J, Girard S, Mayotte N, Bonneil E, Thibault P, Pabst C, Bergeron A, Barabe F, Hebert J, Sauvageau M, Boutonnet C, Meloche S, Sauvageau G" ], [ "Q3TEW6-1", "24531688", "Loss of Mpzl3 function causes various skin abnormalities and greatly reduced adipose depots.", "The Journal of investigative dermatology", "2014 Jul", "Leiva AG, Chen AL, Devarajan P, Chen Z, Damanpour S, Hall JA, Bianco AC, Li J, Badiavas EV, Zaias J, Miteva M, Romanelli P, Nouri K, Cao Wikramanayake T" ], [ "Q3TEW6-1", "18378677", "Noonan syndrome-associated SHP-2/Ptpn11 mutants enhance SIRPalpha and PZR tyrosyl phosphorylation and promote adhesion-mediated ERK activation.", "The Journal of biological chemistry", "2008 May 30", "Eminaga S, Bennett AM" ], [ "Q3TEW6-1", "18568953", "Phosphorylation and localization of protein-zero related (PZR) in cultured endothelial cells.", "Endothelium : journal of endothelial cell research", "2008 May-Jun", "Kusano K, Thomas TN, Fujiwara K" ], [ "Q3TEW6-1", "17440960", "The murine ortholog of the SHP-2 binding molecule, PZR accelerates cell migration on fibronectin and is expressed in early embryo formation.", "Journal of cellular biochemistry", "2007 Nov 1", "Roubelakis MG, Martin-Rendon E, Tsaknakis G, Stavropoulos A, Watt SM" ], [ "Q04592-1", "29126984", "Osteopontin as a novel substrate for the proprotein convertase 5/6 (PCSK5) in bone.", "Bone", "2018 Feb", "Hoac B, Susan-Resiga D, Essalmani R, Marcinkiweicz E, Seidah NG, McKee MD" ], [ "Q04592-1", "28468828", "Thrombin activation of protein C requires prior processing by a liver proprotein convertase.", "The Journal of biological chemistry", "2017 Jun 23", "Essalmani R, Susan-Resiga D, Guillemot J, Kim W, Sachan V, Awan Z, Chamberland A, Asselin MC, Ly K, Desjardins R, Day R, Prat A, Seidah NG" ], [ "Q04592-1", "28446132", "Pcsk5 is required in the early cranio-cardiac mesoderm for heart development.", "BMC developmental biology", "2017 Apr 26", "Szumska D, Cioroch M, Keeling A, Prat A, Seidah NG, Bhattacharya S" ], [ "Q8BGE5-1", "29895858", "A homozygous FANCM frameshift pathogenic variant causes male infertility.", "Genetics in medicine : official journal of the American College of Medical Genetics", "2019 Jan", "Yin H, Ma H, Hussain S, Zhang H, Xie X, Jiang L, Jiang X, Iqbal F, Bukhari I, Jiang H, Ali A, Zhong L, Li T, Fan S, Zhang B, Gao J, Li Y, Nazish J, Khan T, Khan M, Zubair M, Hao Q, Fang H, Huang J, Huleihel M, Sha J, Pandita TK, Zhang Y, Shi Q" ], [ "Q8BGE5-1", "30022024", "The concerted roles of FANCM and Rad52 in the protection of common fragile sites.", "Nature communications", "2018 Jul 18", "Wang H, Li S, Oaks J, Ren J, Li L, Wu X" ], [ "Q8BGE5-1", "19561169", "Fancm-deficient mice reveal unique features of Fanconi anemia complementation group M.", "Human molecular genetics", "2009 Sep 15", "Bakker ST, van de Vrugt HJ, Rooimans MA, Oostra AB, Steltenpool J, Delzenne-Goette E, van der Wal A, van der Valk M, Joenje H, te Riele H, de Winter JP" ], [ "Q3UHD9-1", "28404596", "Tumor Necrosis Factor-alpha Promotes Phosphoinositide 3-Kinase Enhancer A and AMP-Activated Protein Kinase Interaction to Suppress Lipid Oxidation in Skeletal Muscle.", "Diabetes", "2017 Jul", "Tse MCL, Herlea-Pana O, Brobst D, Yang X, Wood J, Hu X, Liu Z, Lee CW, Zaw AM, Chow BKC, Ye K, Chan CB" ], [ "Q3UHD9-1", "28096359", "alpha-Synuclein binds and sequesters PIKE-L into Lewy bodies, triggering dopaminergic cell death via AMPK hyperactivation.", "Proceedings of the National Academy of Sciences of the United States of America", "2017 Jan 31", "Kang SS, Zhang Z, Liu X, Manfredsson FP, He L, Iuvone PM, Cao X, Sun YE, Jin L, Ye K" ], [ "Q3UHD9-1", "24449917", "PIKE is essential for oligodendroglia development and CNS myelination.", "Proceedings of the National Academy of Sciences of the United States of America", "2014 Feb 4", "Chan CB, Liu X, Zhao L, Liu G, Lee CW, Feng Y, Ye K" ], [ "Q3UHD9-1", "20068140", "Deficiency of phosphoinositide 3-kinase enhancer protects mice from diet-induced obesity and insulin resistance.", "Diabetes", "2010 Apr", "Chan CB, Liu X, Jung DY, Jun JY, Luo HR, Kim JK, Ye K" ], [ "Q3UHD9-1", "18469807", "Netrin-1 mediates neuronal survival through PIKE-L interaction with the dependence receptor UNC5B.", "Nature cell biology", "2008 Jun", "Tang X, Jang SW, Okada M, Chan CB, Feng Y, Liu Y, Luo SW, Hong Y, Rama N, Xiong WC, Mehlen P, Ye K" ], [ "P56812-1", "29588416", "Programmed cell death 5 suppresses AKT-mediated cytoprotection of endothelium.", "Proceedings of the National Academy of Sciences of the United States of America", "2018 May 1", "Lee SH, Seo J, Park SY, Jeong MH, Choi HK, Lee CJ, Kim MJ, Guk G, Lee S, Park H, Jeong JW, Ha CH, Park S, Yoon HG" ], [ "O70546-1", "30006524", "UTX is an escape from X-inactivation tumor-suppressor in B cell lymphoma.", "Nature communications", "2018 Jul 13", "Li X, Zhang Y, Zheng L, Liu M, Chen CD, Jiang H" ], [ "Q9D6Y7-1", "29649787", "Defective protein repair under methionine sulfoxide A deletion drives autophagy and ARE-dependent gene transcription.", "Redox biology", "2018 Jun", "Pennington SM, Klutho PR, Xie L, Broadhurst K, Koval OM, McCormick ML, Spitz DR, Grumbach IM" ], [ "Q9D6Y7-1", "29929200", "Methionine Sulfoxide Reductase A Knockout Mice Show Progressive Hearing Loss and Sensitivity to Acoustic Trauma.", "Audiology & neuro-otology", "2018", "Alqudah S, Chertoff M, Durham D, Moskovitz J, Staecker H, Peppi M" ] ] }, "readme": "Name\n - Mouse Protein Citations (RefSeq)\n\nVersion\n - 1.5.13\n\nCreated on\n - 2019-09-06T14:06:38.962804\n\nModified on\n - 2019-12-01T15:07:18.213629\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Citations (RefSeq) datasets contains mouse [taxid:10090] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10090.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.13/source/refseq_protein_all_10090.gpff\n Name: mouse_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.13/reviewed/mouse_protein_xref_refseq.csv\n Output Subdomain\n Name: mouse_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.13/reviewed/mouse_protein_citations_refseq.csv\n Name: mouse_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.13/reviewed/mouse_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"4590\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"7962\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"740\"\n Name: \"authors\"\n Description: \"\"\n Unique Values: \"7947\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"2606\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"7962\"", "downloadurl": "/ln2data/releases/data/v-1.5.13/reviewed/mouse_protein_citations_refseq.csv" }