{ "bcoid": "GLY_000270", "title": "Rat UniProtKB Xref BRENDA", "description": "The Rat UniprotKB Xref BRENDA contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...", "filename": "rat_protein_xref_brenda.csv", "filetype": "csv", "categories": { "species": "Rattus Norvegicus", "molecule": "Protein", "tags": "Brenda cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30349-1...", "3.3.2.6..." ], [ "Q9WUD9-1...", "2.7.10.2..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "P30349-1", "3.3.2.6", "5301" ], [ "Q9WUD9-1", "2.7.10.2", "5301" ], [ "P56574-1", "1.1.1.42", "5301" ], [ "Q14U74-1", "2.4.1.109", "5301" ], [ "Q63009-1", "2.1.1.125", "5301" ], [ "Q02765-1", "3.4.22.27", "5301" ], [ "P83645-1", "1.11.1.9", "5301" ], [ "Q62711-1", "3.1.4.11", "5301" ], [ "P55146-1", "2.7.10.1", "5301" ], [ "Q6XQN1-1", "6.3.4.21", "5301" ], [ "Q9R063-1", "1.11.1.15", "5301" ], [ "Q06606-1", "3.4.21.B3", "5301" ], [ "Q03238-1", "3.4.21.B2", "5301" ], [ "P07872-1", "1.3.3.6", "5301" ], [ "Q63639-1", "1.2.1.36", "5301" ], [ "Q91Z63-1", "6.3.2.19", "5301" ], [ "Q9JJ46-1", "5.3.3.5", "5301" ], [ "Q00972-1", "2.7.11.4", "5301" ], [ "P49621-1", "2.7.1.107", "5301" ], [ "P49897-1", "1.97.1.11", "5301" ], [ "P17105-1", "2.7.1.127", "5301" ], [ "P39951-1", "2.7.11.22", "5301" ], [ "O35790-1", "3.5.1.89", "5301" ], [ "O35795-1", "3.6.1.5", "5301" ], [ "O35826-1", "5.1.3.14", "5301" ], [ "P43527-1", "3.4.22.36", "5301" ], [ "Q3L7M0-1", "2.4.1.88", "5301" ], [ "P56558-1", "2.4.1.255", "5301" ], [ "Q9ERD9-1", "1.13.11.52", "5301" ], [ "P46462-1", "3.6.4.6", "5301" ], [ "Q9QY78-1", "2.7.11.10", "5301" ], [ "Q9WTY9-1", "2.7.11.24", "5301" ], [ "Q63285-1", "2.7.11.1", "5301" ], [ "P40146-1", "4.6.1.1", "5301" ], [ "Q9R012-1", "2.7.11.21", "5301" ], [ "Q64559-2", "3.1.2.2", "5301" ], [ "Q64559-2", "3.1.2.20", "5301" ], [ "Q99P84-1", "3.1.4.11", "5301" ], [ "Q8CGU9-1", "1.14.16.4", "5301" ], [ "Q4QQV7-1", "1.14.99.38", "5301" ], [ "P04176-1", "1.14.16.1", "5301" ], [ "P04177-1", "1.14.16.2", "5301" ], [ "P22789-1", "2.8.2.2", "5301" ], [ "Q8K4Y7-1", "3.6.1.6", "5301" ], [ "P80203-1", "2.7.10.2", "5301" ], [ "Q9WUW9-1", "2.8.2.1", "5301" ], [ "Q63342-1", "1.5.8.4", "5301" ], [ "Q99PR0-1", "2.4.1.109", "5301" ], [ "Q62833-1", "2.7.11.16", "5301" ], [ "P38062-1", "3.4.11.18", "5301" ], [ "P09215-1", "2.7.11.13", "5301" ], [ "P00507-1", "2.6.1.1", "5301" ], [ "Q63704-1", "2.3.1.21", "5301" ], [ "O88496-1", "4.1.1.90", "5301" ], [ "P35355-1", "1.14.99.1", "5301" ], [ "Q672K1-1", "1.6.3.1", "5301" ], [ "Q91ZW6-1", "1.14.11.8", "5301" ], [ "Q8CJB9-1", "2.3.2.B10", "5301" ], [ "Q8CJB9-1", "6.3.2.19", "5301" ], [ "Q64573-1", "3.1.1.1", "5301" ], [ "P07338-1", "3.4.21.1", "5301" ], [ "Q02293-1", "2.5.1.58", "5301" ], [ "P04799-1", "1.14.14.1", "5301" ], [ "Q00495-1", "2.7.10.1", "5301" ], [ "Q1HAQ0-1", "2.3.1.23", "5301" ], [ "Q6J1Y9-1", "3.4.19.12", "5301" ], [ "O08875-1", "2.7.11.1", "5301" ], [ "Q62696-1", "2.7.4.8", "5301" ], [ "Q6P7B9-1", "1.14.19.1", "5301" ], [ "P0C644-1", "2.7.4.24", "5301" ], [ "Q499N4-1", "2.5.1.39", "5301" ], [ "Q62956-1", "2.7.10.1", "5301" ], [ "Q03351-1", "2.7.10.1", "5301" ], [ "P70473-1", "5.1.99.4", "5301" ], [ "P53767-1", "2.7.10.1", "5301" ], [ "Q62915-1", "2.7.11.1", "5301" ], [ "P97612-1", "3.5.1.4", "5301" ], [ "P97612-1", "3.5.1.99", "5301" ], [ "O08680-1", "2.7.10.1", "5301" ], [ "Q99P39-1", "2.8.1.7", "5301" ], [ "Q62799-1", "2.7.10.1", "5301" ], [ "P36506-1", "2.7.12.2", "5301" ], [ "P07314-1", "2.3.2.2", "5301" ], [ "Q811A3-1", "1.14.11.4", "5301" ] ] }, "readme": "Name\n - Rat UniProtKB Xref BRENDA\n\nVersion\n - 1.5.12\n\nCreated on\n - 2019-09-06T14:06:38.996476\n\nModified on\n - 2019-11-28T10:44:51.631234\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat UniprotKB Xref BRENDA contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to BRENDA database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - BRENDA is an information system representing one of the most comprehensive enzyme repositories. It is an electronic resource that comprises molecular and biochemical information on enzymes that have been classified by the IUBMB.\n\nDescription Domain\n Keywords\n - enzyme\n - ec number\n - BRENDA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to BRENDA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-rattus-norvegicus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-rattus-norvegicus.nt\n Name: rat_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_masterlist.csv\n Output Subdomain\n Name: rat_protein_xref_brenda.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_brenda.csv\n Name: rat_protein_xref_brenda.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_brenda.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"615\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"392\"", "downloadurl": "/ln2data/releases/data/v-1.5.12/reviewed/rat_protein_xref_brenda.csv" }