{ "bcoid": "GLY_000264", "title": "Rat Protein Citations (RefSeq)", "description": "The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to ...", "filename": "rat_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus Norvegicus", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q63366-1...", "12141453..." ], [ "Q62921-1...", "15833741..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "Q63366-1", "12141453", "Expression of neurexin ligands, the neuroligins and the neurexophilins, in the developing and adult rodent olfactory bulb.", "The International journal of developmental biology", "2002", "Clarris HJ, McKeown S, Key B" ], [ "Q62921-1", "15833741", "Nuclear-cytoplasmic shuttling of a RING-IBR protein RBCK1 and its functional interaction with nuclear body proteins.", "The Journal of biological chemistry", "2005 Jun 17", "Tatematsu K, Yoshimoto N, Koyanagi T, Tokunaga C, Tachibana T, Yoneda Y, Yoshida M, Okajima T, Tanizawa K, Kuroda S" ], [ "Q62868-1", "29791873", "RhoA/ROCK signaling regulates smooth muscle phenotypic modulation and vascular remodeling via the JNK pathway and vimentin cytoskeleton.", "Pharmacological research", "2018 Jul", "Tang L, Dai F, Liu Y, Yu X, Huang C, Wang Y, Yao W" ], [ "Q62868-1", "29219181", "Exercise increases Rho-kinase activity and insulin signaling in skeletal muscle.", "Journal of cellular physiology", "2018 Jun", "Munoz VR, Gaspar RC, Kuga GK, da Rocha AL, Crisol BM, Botezelli JD, Baptista IL, Mekary RA, da Silva ASR, Cintra DE, de Moura LP, Ropelle ER, Pauli JR" ], [ "Q8VID6-1", "19445908", "PDE9A, PDE10A, and PDE11A expression in rat trigeminovascular pain signalling system.", "Brain research", "2009 Jul 24", "Kruse LS, Moller M, Tibaek M, Gammeltoft S, Olesen J, Kruuse C" ], [ "Q8VID6-1", "17696499", "N-Terminal domain of phosphodiesterase-11A4 (PDE11A4) decreases affinity of the catalytic site for substrates and tadalafil, and is involved in oligomerization.", "Biochemistry", "2007 Sep 11", "Weeks JL 2nd, Zoraghi R, Francis SH, Corbin JD" ], [ "P01257-1", "29846865", "CGRP gene-modified rBMSCs show better osteogenic differentiation capacity in vitro.", "Journal of molecular histology", "2018 Aug", "Yu X, Liu S, Chen H, Zhao X, Chen X, Du Y, Li S" ], [ "P01257-1", "29730242", "Potentiation of capsaicin-induced neurogenic inflammation by 5-HT7 receptors in the rat hind paw: Involvement of calcitonin gen-related peptide.", "Peptides", "2018 Jul", "Arreola-Peralta LD, Altamirano-Reyna F, Galindo-Gonzalez DM, Solis-Anguiano JG, Lacivita E, Leopoldo M, Terron JA" ], [ "P01257-1", "28599085", "Exploring the putative role of TRPV1 -dependent CGRP release in remote hind preconditioning-induced cardioprotection.", "Cardiovascular therapeutics", "2017 Oct", "Randhawa PK, Jaggi AS" ], [ "P01257-1", "28560441", "CGRP attenuates hyperoxia-induced oxidative stress-related injury to alveolar epithelial type II cells via the activation of the Sonic hedgehog pathway.", "International journal of molecular medicine", "2017 Jul", "Dang HX, Li J, Liu C, Fu Y, Zhou F, Tang L, Li L, Xu F" ], [ "Q91XV6-1", "17676640", "Dynamic expression of FXYD6 in the inner ear suggests a role of the protein in endolymph homeostasis and neuronal activity.", "Developmental dynamics : an official publication of the American Association of Anatomists", "2007 Sep", "Delprat B, Puel JL, Geering K" ], [ "Q91XV6-1", "15193427", "Phosphohippolin expression in the rat central nervous system.", "Brain research. Molecular brain research", "2004 Jun 18", "Kadowaki K, Sugimoto K, Yamaguchi F, Song T, Watanabe Y, Singh K, Tokuda M" ], [ "Q7TT49-1", "18854160", "A tripartite complex containing MRCK modulates lamellar actomyosin retrograde flow.", "Cell", "2008 Oct 3", "Tan I, Yong J, Dong JM, Lim L, Leung T" ], [ "D3ZCS4-1", "17244649", "IQGAP3, a novel effector of Rac1 and Cdc42, regulates neurite outgrowth.", "Journal of cell science", "2007 Feb 15", "Wang S, Watanabe T, Noritake J, Fukata M, Yoshimura T, Itoh N, Harada T, Nakagawa M, Matsuura Y, Arimura N, Kaibuchi K" ], [ "Q62747-1", "28111077", "Synaptotagmin-1- and Synaptotagmin-7-Dependent Fusion Mechanisms Target Synaptic Vesicles to Kinetically Distinct Endocytic Pathways.", "Neuron", "2017 Feb 8", "Li YC, Chanaday NL, Xu W, Kavalali ET" ], [ "Q62747-1", "27771350", "Synaptotagmin 7 and SYNCRIP proteins are ubiquitously expressed in the rat brain and co-localize in Purkinje neurons.", "Journal of chemical neuroanatomy", "2017 Jan", "Tratnjek L, Zivin M, Glavan G" ], [ "P35439-1", "29779156", "Adolescent isolation rearing produces a prepulse inhibition deficit correlated with expression of the NMDA GluN1 subunit in the nucleus accumbens.", "Brain structure & function", "2018 Sep", "Fitzgerald ML, Pickel VM" ], [ "P35439-1", "29390057", "Enhanced Hypothalamic NMDA Receptor Activity Contributes to Hyperactivity of HPA Axis in Chronic Stress in Male Rats.", "Endocrinology", "2018 Mar 1", "Zhou JJ, Gao Y, Zhang X, Kosten TA, Li DP" ], [ "P35439-1", "28958939", "Effect of the changes of NMDA receptor in hypothalamic paraventricular nucleus on cardiac function and sympathetic nervous activity in rats with heart failure.", "Biochemical and biophysical research communications", "2017 Nov 25", "Sun Y, Sun B, He R" ], [ "P35439-1", "28384476", "Allosteric Interactions between NMDA Receptor Subunits Shape the Developmental Shift in Channel Properties.", "Neuron", "2017 Apr 5", "Sun W, Hansen KB, Jahr CE" ], [ "Q5XIF5-1", "21914808", "Dihydroceramide-based response to hypoxia.", "The Journal of biological chemistry", "2011 Nov 4", "Devlin CM, Lahm T, Hubbard WC, Van Demark M, Wang KC, Wu X, Bielawska A, Obeid LM, Ivan M, Petrache I" ], [ "Q80ZD7-1", "22056818", "AMIGO is an auxiliary subunit of the Kv2.1 potassium channel.", "EMBO reports", "2011 Dec 1", "Peltola MA, Kuja-Panula J, Lauri SE, Taira T, Rauvala H" ], [ "Q63673-1", "28560441", "CGRP attenuates hyperoxia-induced oxidative stress-related injury to alveolar epithelial type II cells via the activation of the Sonic hedgehog pathway.", "International journal of molecular medicine", "2017 Jul", "Dang HX, Li J, Liu C, Fu Y, Zhou F, Tang L, Li L, Xu F" ], [ "G3V783-1", "26138652", "Nod2-Rip2 Signaling Contributes to Intestinal Injury Induced by Muramyl Dipeptide Via Oligopeptide Transporter in Rats.", "Digestive diseases and sciences", "2015 Nov", "Ma G, Shi B, Liu J, Zhang H, YinTao Z, Lou X, Liang D, Hou Y, Wan S, Yang W" ], [ "Q00969-1", "29921170", "ATF2, but not ATF3, participates in the maintenance of nerve injury-induced tactile allodynia and thermal hyperalgesia.", "Molecular pain", "2018 Jan-Dec", "Salinas-Abarca AB, Velazquez-Lagunas I, Franco-Enzastiga U, Torres-Lopez JE, Rocha-Gonzalez HI, Granados-Soto V" ], [ "Q00969-1", "26781764", "A Low-Protein, High-Carbohydrate Diet Stimulates Thermogenesis in the Brown Adipose Tissue of Rats via ATF-2.", "Lipids", "2016 Mar", "de Franca SA, dos Santos MP, Przygodda F, Garofalo MA, Kettelhut IC, Magalhaes DA, Bezerra KS, Colodel EM, Flouris AD, Andrade CM, Kawashita NH" ], [ "Q00969-1", "26601778", "Counter-regulation of the AP-1 monomers pATF2 and Fos: Molecular readjustment of brainstem neurons in hearing and deaf adult rats after electrical intracochlear stimulation.", "Neuroscience", "2016 Jan 28", "Rauch AK, Rosskothen-Kuhl N, Illing RB" ], [ "P14844-1", "29637744", "The group VIA calcium-independent phospholipase A2 and NFATc4 pathway mediates IL-1beta-induced expression of chemokines CCL2 and CXCL10 in rat fibroblasts.", "The FEBS journal", "2018 Jun", "Kuwata H, Yuzurihara C, Kinoshita N, Taki Y, Ikegami Y, Washio S, Hirakawa Y, Yoda E, Aiuchi T, Itabe H, Nakatani Y, Hara S" ], [ "P26342-1", "30598510", "TGF-beta2 uses the concave surface of its extended finger region to bind betaglycan's ZP domain via three residues specific to TGF-beta and inhibin-alpha.", "The Journal of biological chemistry", "2019 Mar 1", "Henen MA, Mahlawat P, Zwieb C, Kodali RB, Hinck CS, Hanna RD, Krzysiak TC, Ilangovan U, Cano KE, Hinck G, Vonberg M, McCabe M, Hinck AP" ], [ "Q4KM34-1", "18508765", "Characterization of a novel cardiac isoform of the cell cycle-related kinase that is regulated during heart failure.", "The Journal of biological chemistry", "2008 Aug 8", "Qiu H, Dai H, Jain K, Shah R, Hong C, Pain J, Tian B, Vatner DE, Vatner SF, Depre C" ], [ "Q68FT9-1", "20164179", "Reaction mechanism and molecular basis for selenium/sulfur discrimination of selenocysteine lyase.", "The Journal of biological chemistry", "2010 Apr 16", "Omi R, Kurokawa S, Mihara H, Hayashi H, Goto M, Miyahara I, Kurihara T, Hirotsu K, Esaki N" ], [ "Q8R5H8-1", "28383554", "SRT1720 promotes survival of aged human mesenchymal stem cells via FAIM: a pharmacological strategy to improve stem cell-based therapy for rat myocardial infarction.", "Cell death & disease", "2017 Apr 6", "Liu X, Hu D, Zeng Z, Zhu W, Zhang N, Yu H, Chen H, Wang K, Wang Y, Wang L, Zhao J, Zhang L, Wu R, Hu X, Wang J" ], [ "Q6RFY2-1", "21487013", "Scapinin-induced inhibition of axon elongation is attenuated by phosphorylation and translocation to the cytoplasm.", "The Journal of biological chemistry", "2011 Jun 3", "Farghaian H, Chen Y, Fu AW, Fu AK, Ip JP, Ip NY, Turnley AM, Cole AR" ], [ "Q920B6-1", "29980241", "Characterization of temperature-sensitive leak K(+) currents and expression of TRAAK, TREK-1, and TREK2 channels in dorsal root ganglion neurons of rats.", "Molecular brain", "2018 Jul 6", "Viatchenko-Karpinski V, Ling J, Gu JG" ], [ "Q920B6-1", "29736614", "MiR-183-5p Alleviates Chronic Constriction Injury-Induced Neuropathic Pain Through Inhibition of TREK-1.", "Neurochemical research", "2018 Jun", "Shi DN, Yuan YT, Ye D, Kang LM, Wen J, Chen HP" ], [ "Q920B6-1", "29462125", "Increased Expression of TREK-1 K+ Channel in the Dorsal Root Ganglion of Rats with Detrusor Overactivity After Partial Bladder Outlet Obstruction.", "Medical science monitor : international medical journal of experimental and clinical research", "2018 Feb 20", "Zhang J, Cao M, Chen Y, Wan Z, Wang H, Lin H, Liang W, Liang Y" ], [ "Q920B6-1", "25675906", "The Role of the Two-Pore Domain Potassium Channel TREK-1 in the Therapeutic Effects of Escitalopram in a Rat Model of Poststroke Depression.", "CNS neuroscience & therapeutics", "2015 Jun", "Lin DH, Zhang XR, Ye DQ, Xi GJ, Hui JJ, Liu SS, Li LJ, Zhang ZJ" ], [ "Q920B6-1", "25778785", "Trek1 contributes to maintaining nasal epithelial barrier integrity.", "Scientific reports", "2015 Mar 17", "Jiang J, Liu JQ, Li J, Li M, Chen HB, Yan H, Mo LH, Qiu SQ, Liu ZG, Yang PC" ], [ "Q673L6-1", "29436610", "Decreased expression of TERT correlated with postnatal cochlear development and proliferation reduction of cochlear progenitor cells.", "Molecular medicine reports", "2018 Apr", "Song YL, Tian KY, Mi WJ, Ding ZJ, Qiu Y, Chen FQ, Zha DJ, Qiu JH" ], [ "Q673L6-1", "29017189", "Curcumin Affects Adipose Tissue-Derived Mesenchymal Stem Cell Aging Through TERT Gene Expression.", "Drug research", "2018 Apr", "Pirmoradi S, Fathi E, Farahzadi R, Pilehvar-Soltanahmadi Y, Zarghami N" ], [ "O35820-1", "20962348", "Probing the active site of the deoxynucleotide N-hydrolase Rcl encoded by the rat gene c6orf108.", "The Journal of biological chemistry", "2010 Dec 31", "Dupouy C, Zhang C, Padilla A, Pochet S, Kaminski PA" ], [ "O35820-1", "17234634", "The c-Myc target gene Rcl (C6orf108) encodes a novel enzyme, deoxynucleoside 5'-monophosphate N-glycosidase.", "The Journal of biological chemistry", "2007 Mar 16", "Ghiorghi YK, Zeller KI, Dang CV, Kaminski PA" ], [ "Q9QXY2-1", "30315850", "MiR-150 promotes angiogensis and proliferation of endothelial progenitor cells in deep venous thrombosis by targeting SRCIN1.", "Microvascular research", "2019 May", "Wang W, Zhu X, Du X, Xu A, Yuan X, Zhan Y, Liu M, Wang S" ], [ "Q9QXY2-1", "28641114", "A Critical Role of Presynaptic Cadherin/Catenin/p140Cap Complexes in Stabilizing Spines and Functional Synapses in the Neocortex.", "Neuron", "2017 Jun 21", "Li MY, Miao WY, Wu QZ, He SJ, Yan G, Yang Y, Liu JJ, Taketo MM, Yu X" ], [ "Q9QXY2-1", "24453341", "p140Cap regulates memory and synaptic plasticity through Src-mediated and citron-N-mediated actin reorganization.", "The Journal of neuroscience : the official journal of the Society for Neuroscience", "2014 Jan 22", "Repetto D, Camera P, Melani R, Morello N, Russo I, Calcagno E, Tomasoni R, Bianchi F, Berto G, Giustetto M, Berardi N, Pizzorusso T, Matteoli M, Di Stefano P, Missler M, Turco E, Di Cunto F, Defilippi P" ], [ "Q9QXY2-1", "23325552", "Localization of multidomain adaptor proteins, p140Cap and vinexin, in the pancreatic islet of a spontaneous diabetes mellitus model, Otsuka Long-Evans Tokushima Fatty rats.", "Medical molecular morphology", "2013 Mar", "Yamauchi M, Sudo K, Ito H, Iwamoto I, Morishita R, Murai T, Kajita K, Ishizuka T, Nagata K" ], [ "Q9QXY2-1", "21725361", "p140Cap suppresses the invasive properties of highly metastatic MTLn3-EGFR cells via impaired cortactin phosphorylation.", "Oncogene", "2012 Feb 2", "Damiano L, Le Devedec SE, Di Stefano P, Repetto D, Lalai R, Truong H, Xiong JL, Danen EH, Yan K, Verbeek FJ, De Luca E, Attanasio F, Buccione R, Turco E, van de Water B, Defilippi P" ], [ "Q63767-1", "20623582", "p130Cas, Crk-associated substrate plays essential roles in liver development by regulating sinusoidal endothelial cell fenestration.", "Hepatology (Baltimore, Md.)", "2010 Sep", "Tazaki T, Sasaki T, Uto K, Yamasaki N, Tashiro S, Sakai R, Tanaka M, Oda H, Honda Z, Honda H" ], [ "Q63767-1", "17617061", "Basic helix-loop-helix protein E47-mediated p21Waf1/Cip1 gene expression regulates apoptosis of intestinal epithelial cells.", "The Biochemical journal", "2007 Oct 15", "Bhattacharya S, Guo H, Ray RM, Johnson LR" ], [ "Q63767-1", "17615370", "Abl silencing inhibits CAS-mediated process and constriction in resistance arteries.", "Circulation research", "2007 Aug 17", "Anfinogenova Y, Wang R, Li QF, Spinelli AM, Tang DD" ], [ "B5DEZ6-1", "21779089", "Expression of new loci associated with obesity in diet-induced obese rats: from genetics to physiology.", "Obesity (Silver Spring, Md.)", "2012 Feb", "Gutierrez-Aguilar R, Kim DH, Woods SC, Seeley RJ" ], [ "Q6X936-1", "12865409", "Neph1 and nephrin interaction in the slit diaphragm is an important determinant of glomerular permeability.", "The Journal of clinical investigation", "2003 Jul", "Liu G, Kaw B, Kurfis J, Rahmanuddin S, Kanwar YS, Chugh SS" ], [ "Q3SWS9-1", "14718537", "Marlin-1, a novel RNA-binding protein associates with GABA receptors.", "The Journal of biological chemistry", "2004 Apr 2", "Couve A, Restituito S, Brandon JM, Charles KJ, Bawagan H, Freeman KB, Pangalos MN, Calver AR, Moss SJ" ], [ "P63057-1", "16115881", "The Optimedin gene is a downstream target of Pax6.", "The Journal of biological chemistry", "2005 Oct 21", "Grinchuk O, Kozmik Z, Wu X, Tomarev S" ], [ "P30937-1", "25926390", "Somatostatin receptor 1-5; expression profiles during rat development.", "Upsala journal of medical sciences", "2015", "Ludvigsen E, Carlsson C, Tiensuu Janson E, Sandler S, Stridsberg M" ], [ "P68101-1", "29289717", "Exploring the Interaction Between eIF2alpha Dysregulation, Acute Endoplasmic Reticulum Stress and DYT1 Dystonia in the Mammalian Brain.", "Neuroscience", "2018 Feb 10", "Beauvais G, Rodriguez-Losada N, Ying L, Zakirova Z, Watson JL, Readhead B, Gadue P, French DL, Ehrlich ME, Gonzalez-Alegre P" ], [ "P12371-1", "29029788", "Differential Ca(2+) mobilization and mast cell degranulation by FcepsilonRI- and GPCR-mediated signaling.", "Cell calcium", "2017 Nov", "Chen YC, Chang YC, Chang HA, Lin YS, Tsao CW, Shen MR, Chiu WT" ], [ "P12371-1", "25289695", "Regulation of the tyrosine phosphorylation of Phospholipid Scramblase 1 in mast cells that are stimulated through the high-affinity IgE receptor.", "PloS one", "2014", "Kassas A, Moura IC, Yamashita Y, Scheffel J, Guerin-Marchand C, Blank U, Sims PJ, Wiedmer T, Monteiro RC, Rivera J, Charles N, Benhamou M" ], [ "P12371-1", "24791697", "Protein tyrosine phosphatase-PEST (PTP-PEST) regulates mast cell-activating signals in PTP activity-dependent and -independent manners.", "Cellular immunology", "2014 May-Jun", "Motohashi S, Koizumi K, Honda R, Maruyama A, Palmer HE, Mashima K" ], [ "P12371-1", "24497038", "Dual regulation of mast cell degranulation through IgE receptor-mediated modulation of M(2)-type pyruvate kinase.", "Archives of pharmacal research", "2014", "Zheng M, Cho DI, Le HT, Cheon SH, Kim KM" ], [ "P12371-1", "22820943", "An involvement of neurokinin-1 receptor in FcepsilonRIota-mediated RBL-2H3 mast cell activation.", "Inflammation research : official journal of the European Histamine Research Society ... [et al.]", "2012 Nov", "Fang X, Hu H, Xie J, Zhu H, Zhang D, Mo W, Zhang R, Yu M" ], [ "Q03061-7", "28439100", "Ventral striatal regulation of CREM mediates impulsive action and drug addiction vulnerability.", "Molecular psychiatry", "2018 May", "Miller ML, Ren Y, Szutorisz H, Warren NA, Tessereau C, Egervari G, Mlodnicka A, Kapoor M, Chaarani B, Morris CV, Schumann G, Garavan H, Goate AM, Bannon MJ, Halperin JM, Hurd YL" ], [ "Q03061-7", "27234251", "Effects of Fluoride on Expression of P450, CREM and ACT Proteins in Rat Testes.", "Biological trace element research", "2017 Jan", "Zhang J, Zhu Y, Liang C, Qie M, Niu R, Sun Z, Wang J, Wang J" ], [ "Q03061-7", "25381014", "Upregulation of CREM/ICER suppresses wound endothelial CRE-HIF-1alpha-VEGF-dependent signaling and impairs angiogenesis in type 2 diabetes.", "Disease models & mechanisms", "2015 Jan", "Bitar MS, Al-Mulla F" ], [ "Q03061-7", "25517116", "The switching role of beta-adrenergic receptor signalling in cell survival or death decision of cardiomyocytes.", "Nature communications", "2014 Dec 17", "Shin SY, Kim T, Lee HS, Kang JH, Lee JY, Cho KH, Kim DH" ], [ "Q03061-7", "23613279", "Hyperglycemia downregulates Connexin36 in pancreatic islets via the upregulation of ICER-1/ICER-1gamma.", "Journal of molecular endocrinology", "2013", "Haefliger JA, Rohner-Jeanrenaud F, Caille D, Charollais A, Meda P, Allagnat F" ], [ "P62501-1", "21791611", "TSC-22 promotes transforming growth factor beta-mediated cardiac myofibroblast differentiation by antagonizing Smad7 activity.", "Molecular and cellular biology", "2011 Sep", "Yan X, Zhang J, Pan L, Wang P, Xue H, Zhang L, Gao X, Zhao X, Ning Y, Chen YG" ], [ "Q78EH2-1", "21080038", "The precursor to the germ cell-specific PCSK4 proteinase is inefficiently activated in transfected somatic cells: evidence of interaction with the BiP chaperone.", "Molecular and cellular biochemistry", "2011 Feb", "Gyamera-Acheampong C, Sirois F, Denis NJ, Mishra P, Figeys D, Basak A, Mbikay M" ], [ "Q9Z2J4-1", "25062485", "Hepatocyte growth factor upregulates nexilin gene expression in cardiomyocytes via JNK pathway.", "Genetics and molecular research : GMR", "2014 Jul 4", "Wang C, You X, Jiang C, Jin C, Meng X, Ding D" ], [ "Q9Z2J4-1", "23383252", "Nexilin, a cardiomyopathy-associated F-actin binding protein, binds and regulates IRS1 signaling in skeletal muscle cells.", "PloS one", "2013", "Lee A, Hakuno F, Northcott P, Pessin JE, Rozakis Adcock M" ], [ "Q5XII0-1", "16954209", "Demonstration of lysosomal localization for the mammalian ependymin-related protein using classical approaches combined with a novel density shift method.", "The Journal of biological chemistry", "2006 Nov 17", "Della Valle MC, Sleat DE, Sohar I, Wen T, Pintar JE, Jadot M, Lobel P" ], [ "D4A6X3-1", "25961457", "KANK deficiency leads to podocyte dysfunction and nephrotic syndrome.", "The Journal of clinical investigation", "2015 Jun", "Gee HY, Zhang F, Ashraf S, Kohl S, Sadowski CE, Vega-Warner V, Zhou W, Lovric S, Fang H, Nettleton M, Zhu JY, Hoefele J, Weber LT, Podracka L, Boor A, Fehrenbach H, Innis JW, Washburn J, Levy S, Lifton RP, Otto EA, Han Z, Hildebrandt F" ], [ "Q6J1Y9-1", "25568336", "USP19 deubiquitinating enzyme inhibits muscle cell differentiation by suppressing unfolded-protein response signaling.", "Molecular biology of the cell", "2015 Mar 1", "Wiles B, Miao M, Coyne E, Larose L, Cybulsky AV, Wing SS" ], [ "Q6J1Y9-1", "19015242", "USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1.", "Molecular and cellular biology", "2009 Jan", "Lu Y, Adegoke OA, Nepveu A, Nakayama KI, Bedard N, Cheng D, Peng J, Wing SS" ], [ "Q812E9-1", "27793698", "Evidence for a role of glycoprotein M6a in dendritic spine formation and synaptogenesis.", "Molecular and cellular neurosciences", "2016 Dec", "Formoso K, Garcia MD, Frasch AC, Scorticati C" ], [ "Q812E9-1", "26809475", "Neuronal filopodium formation induced by the membrane glycoprotein M6a (Gpm6a) is facilitated by coronin-1a, Rac1, and p21-activated kinase 1 (Pak1).", "Journal of neurochemistry", "2016 Apr", "Alvarez Julia A, Frasch AC, Fuchsova B" ], [ "Q812E9-1", "25940868", "Filopodia formation driven by membrane glycoprotein M6a depends on the interaction of its transmembrane domains.", "Journal of neurochemistry", "2015 Aug", "Formoso K, Garcia MD, Frasch AC, Scorticati C" ], [ "Q812E9-1", "23959066", "Prenatal stress changes the glycoprotein GPM6A gene expression and induces epigenetic changes in rat offspring brain.", "Epigenetics", "2014 Jan", "Monteleone MC, Adrover E, Pallares ME, Antonelli MC, Frasch AC, Brocco MA" ], [ "Q812E9-1", "18241840", "Glycoprotein M6a is present in glutamatergic axons in adult rat forebrain and cerebellum.", "Brain research", "2008 Mar 4", "Cooper B, Werner HB, Flugge G" ], [ "Q812E9-1", "16286650", "The stress-regulated protein M6a is a key modulator for neurite outgrowth and filopodium/spine formation.", "Proceedings of the National Academy of Sciences of the United States of America", "2005 Nov 22", "Alfonso J, Fernandez ME, Cooper B, Flugge G, Frasch AC" ], [ "Q812E9-1", "12359212", "M6a acts as a nerve growth factor-gated Ca(2+) channel in neuronal differentiation.", "Biochemical and biophysical research communications", "2002 Oct 4", "Mukobata S, Hibino T, Sugiyama A, Urano Y, Inatomi A, Kanai Y, Endo H, Tashiro F" ], [ "Q9P290-1", "30404645", "Tonicity inversely modulates lipocalin-2 (Lcn2/24p3/NGAL) receptor (SLC22A17) and Lcn2 expression via Wnt/beta-catenin signaling in renal inner medullary collecting duct cells: implications for cell fate and bacterial infection.", "Cell communication and signaling : CCS", "2018 Nov 7", "Betten R, Scharner B, Probst S, Edemir B, Wolff NA, Langelueddecke C, Lee WK, Thevenod F" ], [ "Q9P290-1", "22084236", "Lipocalin-2 (24p3/neutrophil gelatinase-associated lipocalin (NGAL)) receptor is expressed in distal nephron and mediates protein endocytosis.", "The Journal of biological chemistry", "2012 Jan 2", "Langelueddecke C, Roussa E, Fenton RA, Wolff NA, Lee WK, Thevenod F" ], [ "B5MEV3-1", "18632736", "Identification and functional characterization of a novel human and rat riboflavin transporter, RFT1.", "American journal of physiology. Cell physiology", "2008 Sep", "Yonezawa A, Masuda S, Katsura T, Inui K" ] ] }, "readme": "Name\n - Rat Protein Citations (RefSeq)\n\nVersion\n - 1.5.12\n\nCreated on\n - 2019-09-06T14:06:38.990766\n\nModified on\n - 2019-12-01T15:07:50.725476\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Citations (RefSeq) datasets contains rat [taxid:10116] UniProtKB accessions mapped to publication information (pmid, title, journal name, publication, date, authors of corresponding RefSeq accessions. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10116.gpff\n URI: https://data.glygen.org/ln2wwwdata/source/refseq_protein_all_10116.gpff\n Name: rat_protein_xref_refseq.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_citations_refseq.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_citations_refseq.csv\n Name: rat_protein_citations_refseq.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"1078\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"1626\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"420\"\n Name: \"authors\"\n Description: \"\"\n Unique Values: \"1622\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"945\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"1626\"", "downloadurl": "/ln2data/releases/data/v-1.5.12/reviewed/rat_protein_citations_refseq.csv" }