{ "bcoid": "GLY_000283", "title": "Glycan Motif", "description": "The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). ...", "filename": "glycan_motif.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "Motif", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00009BX...", "G00055MO..." ], [ "G00009BX...", "G00068MO..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_ac_motif" }, { "type": "string", "label": "motif_name" }, { "type": "string", "label": "is_reducing_end" } ], [ "G00009BX", "G00055MO", "Lactosamine motif", "false" ], [ "G00009BX", "G00068MO", "Blood group H", "false" ], [ "G00012MO", "G00012MO", "Glycosphingolipid Isoglobo series", "true" ], [ "G00012MO", "G00046MO", "Galalpha1-3Gal epitope", "false" ], [ "G00012RZ", "G00026MO", "N-Glycan core basic", "true" ], [ "G00012RZ", "G00030MO", "N-Glycan complex", "true" ], [ "G00012RZ", "G00051MO", "Lewis X", "false" ], [ "G00012RZ", "G00054MO", "Sialyl Lewis X", "false" ], [ "G00012RZ", "G00055MO", "Lactosamine motif", "false" ], [ "G00012RZ", "G00065MO", "VIM", "false" ], [ "G00013MO", "G00013MO", "Glycosphingolipid Muco series", "true" ], [ "G00014MO", "G00014MO", "Glycosphingolipid Arthro series", "true" ], [ "G00014MO", "G00057MO", "LacDiNAc", "false" ], [ "G00015MO", "G00015MO", "Glycosphingolipid Mollu series", "true" ], [ "G00016MO", "G00016MO", "Glycosphingolipid Gala series", "true" ], [ "G00017MO", "G00017MO", "Hyluronan", "false" ], [ "G00018MO", "G00018MO", "Chondroitin 4S", "false" ], [ "G00019MO", "G00019MO", "Dermatansulfate", "false" ], [ "G00020MO", "G00020MO", "Keratansulfate", "false" ], [ "G00021MO", "G00021MO", "Heparin", "false" ], [ "G00021MO", "G54161DR", "Heparin", "false" ], [ "G00022MO", "G00022MO", "LPS core", "false" ], [ "G00023MO", "G00023MO", "Peptidoglycan", "false" ], [ "G00024MO", "G00024MO", "Beta-glucan", "false" ], [ "G00025MO", "G00025MO", "Cellulose like Glc(1-4)n", "true" ], [ "G00025YC", "G00026MO", "N-Glycan core basic", "true" ], [ "G00025YC", "G00030MO", "N-Glycan complex", "true" ], [ "G00025YC", "G00055MO", "Lactosamine motif", "false" ], [ "G00026MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00027JG", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00027JG", "G00034MO", "O-Glycan core 2 fuzzy", "true" ], [ "G00027JG", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00027JG", "G00055MO", "Lactosamine motif", "false" ], [ "G00027JG", "G00068MO", "Blood group H", "false" ], [ "G00027MO", "G00027MO", "N-Glycan truncated motif. First GlcpNAC cut off", "true" ], [ "G00028MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00028MO", "G00028MO", "N-Glycan high mannose", "true" ], [ "G00029MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00029MO", "G00029MO", "N-Glycan hybrid", "true" ], [ "G00030MO", "G00026MO", "N-Glycan core basic", "true" ], [ "G00030MO", "G00030MO", "N-Glycan complex", "true" ], [ "G00031MO", "G00031MO", "O-Glycan core 1", "true" ], [ "G00031MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00032MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00033MO", "G00031MO", "O-Glycan core 1", "true" ], [ "G00033MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00033MO", "G00033MO", "O-Glycan core 2", "true" ], [ "G00033MO", "G00034MO", "O-Glycan core 2 fuzzy", "true" ], [ "G00033MO", "G00041MO", "O-Glycan core 6", "true" ], [ "G00033MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00034MO", "G00032MO", "O-Glycan core 1 fuzzy", "true" ], [ "G00034MO", "G00034MO", "O-Glycan core 2 fuzzy", "true" ], [ "G00034MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00035MO", "G00035MO", "O-Glycan core 3", "true" ], [ "G00035MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00036MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00037MO", "G00035MO", "O-Glycan core 3", "true" ], [ "G00037MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00037MO", "G00037MO", "O-Glycan core 4", "true" ], [ "G00037MO", "G00038MO", "O-Glycan core 4 fuzzy", "true" ], [ "G00037MO", "G00041MO", "O-Glycan core 6", "true" ], [ "G00037MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00038MO", "G00036MO", "O-Glycan core 3 fuzzy", "true" ], [ "G00038MO", "G00038MO", "O-Glycan core 4 fuzzy", "true" ], [ "G00038MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00039MO", "G00039MO", "O-Glycan core 5", "true" ], [ "G00039MO", "G00040MO", "O-Glycan core 5 fuzzy", "true" ], [ "G00040MO", "G00040MO", "O-Glycan core 5 fuzzy", "true" ], [ "G00041MO", "G00041MO", "O-Glycan core 6", "true" ], [ "G00041MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00042MO", "G00042MO", "O-Glycan core 6 Fuzzy", "true" ], [ "G00043MO", "G00043MO", "O-Glycan core 7", "true" ], [ "G00043MO", "G00044MO", "O-Glycan core 7 fuzzy", "true" ], [ "G00044MO", "G00044MO", "O-Glycan core 7 fuzzy", "true" ], [ "G00045MO", "G00045MO", "GPI anchor core", "false" ], [ "G00046MO", "G00046MO", "Galalpha1-3Gal epitope", "false" ], [ "G00047MO", "G00047MO", "Lewis A", "false" ], [ "G00048MO", "G00047MO", "Lewis A", "false" ], [ "G00048MO", "G00048MO", "Lewis B", "false" ], [ "G00048MO", "G00056MO", "Neo Lactosamine", "false" ], [ "G00048MO", "G00068MO", "Blood group H", "false" ], [ "G00049MO", "G00049MO", "Lewis C", "false" ], [ "G00049MO", "G00056MO", "Neo Lactosamine", "false" ], [ "G00049MO", "G00069MO", "Glycosphingolipid Lacto series", "true" ] ] }, "readme": "Name\n - Glycan Motif\n\nVersion\n - 1.5.12\n\nCreated on\n - 2019-11-13T13:05:37.256972\n\nModified on\n - 2019-11-13T13:17:54.733495\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Motif\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: allmotif.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.12/source/allmotif.tsv\n Output Subdomain\n Name: glycan_motif.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.12/reviewed/glycan_motif.csv\n Name: glycan_motif.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.12/reviewed/glycan_motif.stat.csv\n\nFields\n Name: \"is_reducing_end\"\n Description: \"\"\n Unique Values: \"2\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"13517\"\n Name: \"glytoucan_ac_motif\"\n Description: \"\"\n Unique Values: \"62\"\n Name: \"motif_name\"\n Description: \"Name of the motif associated with the glycan\"\n Unique Values: \"61\"", "downloadurl": "/ln2data/releases/data/v-1.5.12/reviewed/glycan_motif.csv" }