{ "bcoid": "GLY_000032", "title": "Mouse Protein Alternative Name (UniProtKB)", "description": "The Mouse Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for mouse ...", "filename": "mouse_protein_altnames.csv", "filetype": "csv", "categories": { "species": "Mus Musculus", "molecule": "Protein", "tags": "Protein Alternative Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH27-1...", "Epidermal gr..." ], [ "Q9JHR7-1...", "Insulin prot..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" } ], [ "Q8BH27-1", "Epidermal growth factor-like protein 5", "EGF-like protein 5" ], [ "Q9JHR7-1", "Insulin protease", "Insulinase" ], [ "Q9JHR7-1", "Insulysin", "" ], [ "Q8VF66-1", "Olfactory receptor 204-21", "" ], [ "Q8VF65-1", "Olfactory receptor 204-22", "" ], [ "B2RXV4-1", "Major facilitator superfamily domain containing 7B", "Mfsd7b" ], [ "Q9CXG9-1", "Polycomb-like protein 3", "" ], [ "Q07968-1", "Transglutaminase B chain", "" ], [ "Q07968-1", "Protein-glutamine gamma-glutamyltransferase B chain", "" ], [ "Q9CXG3-1", "Cyclophilin-like protein PPIL4", "" ], [ "Q9CXG3-1", "Rotamase PPIL4", "" ], [ "P01942-1", "Alpha-globin", "" ], [ "P01942-1", "Hemoglobin alpha chain", "" ], [ "P03899-1", "NADH dehydrogenase subunit 3", "" ], [ "O35153-1", "Vesicle transport protein GOS15", "" ], [ "O35153-1", "Golgi SNARE with a size of 15 kDa", "GS15" ], [ "P03893-1", "NADH dehydrogenase subunit 2", "" ], [ "P52479-1", "Ubiquitin-specific-processing protease 10", "" ], [ "P52479-1", "Ubiquitin thioesterase 10", "" ], [ "P52479-1", "Deubiquitinating enzyme 10", "" ], [ "P02762-1", "Group 1, BS6", "" ], [ "P02762-1", "Alpha-2U-globulin", "" ], [ "Q9QYH6-1", "Neurotrophin receptor-interacting MAGE homolog", "" ], [ "Q9QYH6-1", "MAGE-D1 antigen", "" ], [ "Q9QYH6-1", "Dlxin-1", "" ], [ "O08537-1", "Nuclear receptor subfamily 3 group A member 2", "" ], [ "Q5EBH1-1", "Regulator for cell adhesion and polarization enriched in lymphoid tissues", "RAPL" ], [ "Q5EBH1-1", "New ras effector 1", "" ], [ "Q61409-1", "CGIPDE1", "" ], [ "Q61409-1", "Cyclic GMP-inhibited phosphodiesterase B", "CGI-PDE B" ], [ "Q80YU0-1", "Alpha/beta hydrolase domain-containing protein 16B", "Abhydrolase domain-containing protein 16B" ], [ "P70414-1", "Na(+)/Ca(2+)-exchange protein 1", "" ], [ "P70414-1", "Solute carrier family 8 member 1", "" ], [ "P70412-1", "Integral membrane-associated protein 1", "" ], [ "P70419-1", "Protein-UDP acetylgalactosaminyltransferase 3", "" ], [ "P70419-1", "Polypeptide GalNAc transferase 3", "pp-GaNTase 3" ], [ "P70419-1", "UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 3", "" ], [ "Q9EP78-1", "N-acetylglucosamine 6-O-sulfotransferase 4", "Gn6st-4" ], [ "Q9EP78-1", "Chondroitin 6-sulfotransferase 2", "mC6ST-2" ], [ "Q9EP78-1", "Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 5", "GST-5" ], [ "Q9EP79-1", "Vomeronasal receptor 3", "" ], [ "Q9EP79-1", "Pheromone receptor VN3", "" ], [ "Q9EP79-1", "Vomeronasal type-1 receptor A7", "" ], [ "Q3URK3-1", "CXXC-type zinc finger protein 6", "" ], [ "Q3URK3-1", "Ten-eleven translocation 1 gene protein homolog", "" ], [ "Q9EP73-1", "B7 homolog 1", "B7-H1" ], [ "Q9EP71-1", "Novel retinal pigment epithelial cell protein", "" ], [ "Q9EP71-1", "p125", "" ], [ "Q9EP71-1", "Retinoic acid-induced protein 14", "" ], [ "Q9EP71-1", "Ankyrin repeat and coiled-coil structure-containing protein", "" ], [ "Q9EP75-1", "Leukotriene-B4 20-monooxygenase 3", "" ], [ "Q9EP75-1", "Cytochrome P450 4F14", "" ], [ "Q9EP75-1", "Cytochrome P450-LTB-omega", "" ], [ "Q9EP75-1", "Cyp4f-14", "" ], [ "P53702-1", "Holocytochrome c-type synthase", "" ], [ "Q8R349-1", "Anaphase-promoting complex subunit 6", "APC6" ], [ "Q8R349-1", "Cyclosome subunit 6", "" ], [ "O08911-1", "Mitogen-activated protein kinase p38 gamma", "MAP kinase p38 gamma" ], [ "O08911-1", "Extracellular signal-regulated kinase 6", "ERK-6" ], [ "O08911-1", "Stress-activated protein kinase 3", "" ], [ "Q80WC9-1", "Acyl-CoA synthetase family member 4", "" ], [ "Q80WC9-1", "Protein LYS2 homolog", "" ], [ "O08912-1", "UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 1", "" ], [ "O08912-1", "Protein-UDP acetylgalactosaminyltransferase 1", "" ], [ "O08912-1", "Polypeptide GalNAc transferase 1", "pp-GaNTase 1" ], [ "O08915-1", "Aryl-hydrocarbon receptor-interacting protein", "" ], [ "O08914-1", "Oleamide hydrolase 1", "" ], [ "O08914-1", "Anandamide amidohydrolase 1", "" ], [ "Q80WC3-1", "Zinc finger protein 469", "" ], [ "Q80WC7-1", "Rev/Rex activation domain-binding protein related", "RAB-R" ], [ "Q80WC7-1", "HIV-1 Rev-binding protein-like protein", "" ], [ "Q9JHY4-1", "Elafin-like protein I", "" ], [ "Q9JHY4-1", "Single WAP motif protein 1", "" ], [ "Q91ZK4-1", "Diencephalon/mesencephalon-expressed brain homeobox gene 1 protein", "" ], [ "Q91ZK4-1", "Paired-type homeobox Atx", "" ], [ "Q91ZK4-1", "Orthodenticle homolog 3", "" ], [ "Q91ZK4-1", "Paired-like homeobox protein DMBX1", "" ], [ "Q91ZK0-1", "Activating enhancer-binding protein 2-delta", "" ], [ "P19070-1", "Complement C3d receptor", "" ], [ "Q8BZM0-1", "CUL3-interacting protein 1", "" ], [ "Q8BZM1-1", "FK506-binding protein-associated protein", "FAP" ], [ "Q8BZM1-1", "FKBP-associated protein", "" ], [ "Q4VC33-1", "Erythroblast macrophage protein", "" ], [ "Q4VC33-1", "Macrophage erythroblast attacher", "" ] ] }, "readme": "Name\n - Mouse Protein Alternative Name (UniProtKB)\n\nVersion\n - 1.5.12\n\nCreated on\n - 2019-01-23T17:21:05.899575\n\nModified on\n - 2019-11-25T17:30:29.090948\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for mouse [taxid:10090] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.12/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.5.12/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_altnames.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.12/reviewed/mouse_protein_altnames.csv\n Name: mouse_protein_altnames.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.5.12/reviewed/mouse_protein_altnames.stat.csv\n\nFields\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"5501\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"11494\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"21666\"", "downloadurl": "/ln2data/releases/data/v-1.5.12/reviewed/mouse_protein_altnames.csv" }