{ "bcoid": "GLY_000293", "title": "Glycan Taxonomy", "description": "The dataset provides NCBI TaxID for the associated glycan (GlyTouCan Accession). The listed GlyTouCan ...", "filename": "glycan_taxonomy.csv", "filetype": "csv", "categories": { "molecule": "Glycan", "tags": "NCBI TaxID", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00016MO...", "183218..." ], [ "G00016MO...", "47083..." ] ], "headers": [ "glytoucan_ac...", "tax_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "tax_id" }, { "type": "string", "label": "source" }, { "type": "string", "label": "source_id" } ], [ "G00016MO", "183218", "GlyTouCan", "G00016MO" ], [ "G00016MO", "47083", "GlyTouCan", "G00016MO" ], [ "G00016MO", "727", "GlyTouCan", "G00016MO" ], [ "G00017MO", "9606", "GlyTouCan", "G00017MO" ], [ "G00018MO", "10114", "GlyTouCan", "G00018MO" ], [ "G00018MO", "107258", "GlyTouCan", "G00018MO" ], [ "G00018MO", "7778", "GlyTouCan", "G00018MO" ], [ "G00024MO", "3193", "GlyTouCan", "G00024MO" ], [ "G00024MO", "4932", "GlyTouCan", "G00024MO" ], [ "G00024MO", "5664", "GlyTouCan", "G00024MO" ], [ "G00025AJ", "9606", "GlyTouCan", "G00025AJ" ], [ "G00025MO", "4530", "GlyTouCan", "G00025MO" ], [ "G00025MO", "4565", "GlyTouCan", "G00025MO" ], [ "G00026MO", "3885", "GlyTouCan", "G00026MO" ], [ "G00026MO", "6846", "GlyTouCan", "G00026MO" ], [ "G00027MO", "10114", "GlyTouCan", "G00027MO" ], [ "G00027MO", "10116", "GlyTouCan", "G00027MO" ], [ "G00028MO", "3885", "GlyTouCan", "G00028MO" ], [ "G00028MO", "3988", "GlyTouCan", "G00028MO" ], [ "G00028MO", "4530", "GlyTouCan", "G00028MO" ], [ "G00028MO", "7458", "GlyTouCan", "G00028MO" ], [ "G00031MO", "10029", "GlyTouCan", "G00031MO" ], [ "G00031MO", "10090", "GlyTouCan", "G00031MO" ], [ "G00031MO", "10114", "GlyTouCan", "G00031MO" ], [ "G00031MO", "10116", "GlyTouCan", "G00031MO" ], [ "G00031MO", "185739", "GlyTouCan", "G00031MO" ], [ "G00031MO", "245411", "UniCarbKB", "4" ], [ "G00031MO", "48550", "GlyTouCan", "G00031MO" ], [ "G00031MO", "622", "GlyTouCan", "G00031MO" ], [ "G00031MO", "7227", "GlyTouCan", "G00031MO" ], [ "G00031MO", "8048", "GlyTouCan", "G00031MO" ], [ "G00031MO", "9544", "GlyTouCan", "G00031MO" ], [ "G00031MO", "9606", "GlyTouCan", "G00031MO" ], [ "G00031MO", "9606", "UniCarbKB", "4" ], [ "G00031MO", "9615", "GlyTouCan", "G00031MO" ], [ "G00031MO", "9825", "GlyTouCan", "G00031MO" ], [ "G00031MO", "9913", "GlyTouCan", "G00031MO" ], [ "G00031MO", "9986", "GlyTouCan", "G00031MO" ], [ "G00032MO", "195", "GlyTouCan", "G00032MO" ], [ "G00032MO", "622", "GlyTouCan", "G00032MO" ], [ "G00032MO", "9031", "GlyTouCan", "G00032MO" ], [ "G00033MO", "9606", "GlyTouCan", "G00033MO" ], [ "G00034MO", "10029", "GlyTouCan", "G00034MO" ], [ "G00034MO", "10114", "GlyTouCan", "G00034MO" ], [ "G00034MO", "9606", "GlyTouCan", "G00034MO" ], [ "G00034MO", "9940", "GlyTouCan", "G00034MO" ], [ "G00035MO", "9606", "GlyTouCan", "G00035MO" ], [ "G00036MO", "9606", "GlyTouCan", "G00036MO" ], [ "G00037MO", "9606", "GlyTouCan", "G00037MO" ], [ "G00038MO", "9606", "GlyTouCan", "G00038MO" ], [ "G00039MO", "9606", "GlyTouCan", "G00039MO" ], [ "G00040MO", "9031", "GlyTouCan", "G00040MO" ], [ "G00040MO", "9606", "GlyTouCan", "G00040MO" ], [ "G00042MO", "9606", "GlyTouCan", "G00042MO" ], [ "G00043MO", "9913", "GlyTouCan", "G00043MO" ], [ "G00044MO", "9606", "GlyTouCan", "G00044MO" ], [ "G00045MO", "5690", "GlyTouCan", "G00045MO" ], [ "G00046MO", "5664", "GlyTouCan", "G00046MO" ], [ "G00046MO", "5693", "GlyTouCan", "G00046MO" ], [ "G00046MO", "9615", "GlyTouCan", "G00046MO" ], [ "G00046MO", "9823", "GlyTouCan", "G00046MO" ], [ "G00047MO", "12721", "GlyTouCan", "G00047MO" ], [ "G00047MO", "9606", "GlyTouCan", "G00047MO" ], [ "G00048MO", "10090", "GlyTouCan", "G00048MO" ], [ "G00048MO", "210", "GlyTouCan", "G00048MO" ], [ "G00048MO", "9534", "GlyTouCan", "G00048MO" ], [ "G00048MO", "9606", "GlyTouCan", "G00048MO" ], [ "G00048MO", "9986", "GlyTouCan", "G00048MO" ], [ "G00049MO", "9606", "GlyTouCan", "G00049MO" ], [ "G00049MO", "9823", "GlyTouCan", "G00049MO" ], [ "G00049MO", "9940", "GlyTouCan", "G00049MO" ], [ "G00049MO", "9986", "GlyTouCan", "G00049MO" ], [ "G00050MO", "10090", "GlyTouCan", "G00050MO" ], [ "G00050MO", "10114", "GlyTouCan", "G00050MO" ], [ "G00050MO", "9606", "GlyTouCan", "G00050MO" ], [ "G00050MO", "9823", "GlyTouCan", "G00050MO" ], [ "G00051MO", "10090", "GlyTouCan", "G00051MO" ], [ "G00051MO", "210", "GlyTouCan", "G00051MO" ], [ "G00051MO", "85962", "GlyTouCan", "G00051MO" ], [ "G00051MO", "8638", "GlyTouCan", "G00051MO" ], [ "G00051MO", "9606", "GlyTouCan", "G00051MO" ], [ "G00052MO", "10036", "GlyTouCan", "G00052MO" ], [ "G00052MO", "10090", "GlyTouCan", "G00052MO" ], [ "G00052MO", "10114", "GlyTouCan", "G00052MO" ] ] }, "readme": "Name\n - Glycan Taxonomy\n\nVersion\n - 1.5.11\n\nCreated on\n - 2019-11-13T16:48:02.390870\n\nModified on\n - 2019-11-13T16:50:50.658337\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides NCBI TaxID for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the GlyTouCan accession master list (https://data.glygen.org/GLYDS000281). Source database: https://glytoucan.org/; https://www.ncbi.nlm.nih.gov/taxonomy\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - NCBI TaxID\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: taxa.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/taxa.tsv\n Output Subdomain\n Name: glycan_taxonomy.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_taxonomy.csv\n Name: glycan_taxonomy.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/glycan_taxonomy.stat.csv\n\nFields\n Name: \"source_id\"\n Description: \"\"\n Unique Values: \"6860\"\n Name: \"source\"\n Description: \"The source database for the data\"\n Unique Values: \"2\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"6682\"\n Name: \"tax_id\"\n Description: \"NCBI Taxonomy database Identifier\"\n Unique Values: \"681\"", "downloadurl": "/ln2data/releases/data/v-1.5.11/reviewed/glycan_taxonomy.csv" }