{ "bcoid": "GLY_000124", "title": "Mouse UniProtKB Xref PRO", "description": "The Mouse UniprotKB Xref PRO contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_pro.csv", "filetype": "csv", "categories": { "species": "Mus Musculus", "molecule": "Protein", "tags": "Pro cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "PR_Q8BH24..." ], [ "Q8BH27-1...", "PR_Q8BH27..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8BH24-1", "PR_Q8BH24", "" ], [ "Q8BH27-1", "PR_Q8BH27", "" ], [ "Q8BH26-1", "PR_Q8BH26", "" ], [ "Q9JHR7-1", "PR_Q9JHR7", "" ], [ "Q8VF66-1", "PR_Q8VF66", "" ], [ "Q8VF65-1", "PR_Q8VF65", "" ], [ "B2RXV4-1", "PR_B2RXV4", "" ], [ "Q9CXG9-1", "PR_Q9CXG9", "" ], [ "Q07968-1", "PR_Q07968", "" ], [ "Q9CXG3-1", "PR_Q9CXG3", "" ], [ "A0A1B0GST9-1", "PR_A0A1B0GST9", "" ], [ "P01942-1", "PR_P01942", "" ], [ "P03899-1", "PR_P03899", "" ], [ "O35153-1", "PR_O35153", "" ], [ "P03893-1", "PR_P03893", "" ], [ "Q9QYH9-1", "PR_Q9QYH9", "" ], [ "P52479-1", "PR_P52479", "" ], [ "P02762-1", "PR_P02762", "" ], [ "Q9QYH6-1", "PR_Q9QYH6", "" ], [ "O08537-1", "PR_O08537", "" ], [ "Q08AU9-1", "PR_Q08AU9", "" ], [ "Q08AU7-1", "PR_Q08AU7", "" ], [ "Q5EBH1-1", "PR_Q5EBH1", "" ], [ "Q61409-1", "PR_Q61409", "" ], [ "Q80YU0-1", "PR_Q80YU0", "" ], [ "Q61400-1", "PR_Q61400", "" ], [ "Q5SRT8-1", "PR_Q5SRT8", "" ], [ "P70414-1", "PR_P70414", "" ], [ "P70412-1", "PR_P70412", "" ], [ "A0A140LIA7-1", "PR_A0A140LIA7", "" ], [ "P70419-1", "PR_P70419", "" ], [ "Q9EP78-1", "PR_Q9EP78", "" ], [ "Q9EP79-1", "PR_Q9EP79", "" ], [ "Q3URK3-1", "PR_Q3URK3", "" ], [ "Q9EP72-1", "PR_Q9EP72", "" ], [ "Q9EP73-1", "PR_Q9EP73", "" ], [ "Q9EP71-1", "PR_Q9EP71", "" ], [ "Q9EP75-1", "PR_Q9EP75", "" ], [ "Q3URK1-1", "PR_Q3URK1", "" ], [ "P53702-1", "PR_P53702", "" ], [ "Q8R349-1", "PR_Q8R349", "" ], [ "Q8R344-1", "PR_Q8R344", "" ], [ "O08911-1", "PR_O08911", "" ], [ "Q80WC9-1", "PR_Q80WC9", "" ], [ "O08912-1", "PR_O08912", "" ], [ "O08915-1", "PR_O08915", "" ], [ "O08914-1", "PR_O08914", "" ], [ "O08917-1", "PR_O08917", "" ], [ "Q80WC3-1", "PR_Q80WC3", "" ], [ "O08918-1", "PR_O08918", "" ], [ "Q80WC1-1", "PR_Q80WC1", "" ], [ "Q80WC7-1", "PR_Q80WC7", "" ], [ "Q9JHY4-1", "PR_Q9JHY4", "" ], [ "Q91ZK4-1", "PR_Q91ZK4", "" ], [ "Q91ZK0-1", "PR_Q91ZK0", "" ], [ "P19070-1", "PR_P19070", "" ], [ "Q8BZM0-1", "PR_Q8BZM0", "" ], [ "Q8BZM1-1", "PR_Q8BZM1", "" ], [ "Q4VC33-1", "PR_Q4VC33", "" ], [ "Q66GT5-1", "PR_Q66GT5", "" ], [ "P50429-1", "PR_P50429", "" ], [ "Q8BTJ4-1", "PR_Q8BTJ4", "" ], [ "Q99LV7-1", "PR_Q99LV7", "" ], [ "Q4G5Y1-1", "PR_Q4G5Y1", "" ], [ "P50427-1", "PR_P50427", "" ], [ "P59708-1", "PR_P59708", "" ], [ "Q9R1N9-1", "PR_Q9R1N9", "" ], [ "Q3V3Q4-1", "PR_Q3V3Q4", "" ], [ "Q7M729-1", "PR_Q7M729", "" ], [ "Q3V3Q7-1", "PR_Q3V3Q7", "" ], [ "Q7M724-1", "PR_Q7M724", "" ], [ "Q7M725-1", "PR_Q7M725", "" ], [ "Q7M720-1", "PR_Q7M720", "" ], [ "Q7M721-1", "PR_Q7M721", "" ], [ "Q7M722-1", "PR_Q7M722", "" ], [ "Q7M723-1", "PR_Q7M723", "" ], [ "P10649-1", "PR_P10649", "" ], [ "P10648-1", "PR_P10648", "" ], [ "Q3UHF7-1", "PR_Q3UHF7", "" ], [ "Q3UHF3-1", "PR_Q3UHF3", "" ], [ "Q6T3U4-1", "PR_Q6T3U4", "" ], [ "Q9D516-1", "PR_Q9D516", "" ], [ "Q9D517-1", "PR_Q9D517", "" ], [ "Q9D513-1", "PR_Q9D513", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref PRO\n\nVersion\n - 1.5.11\n\nCreated on\n - 2019-03-15T16:10:07.474480\n\nModified on\n - 2019-11-27T14:57:45.322841\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniprotKB Xref PRO contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to PRO database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n - PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them.\n\nDescription Domain\n Keywords\n - protein ontology\n - PRO\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PRO database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-mus-musculus.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-mus-musculus.nt\n Name: mouse_protein_masterlist.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_masterlist.csv\n Output Subdomain\n Name: mouse_protein_xref_pro.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_pro.csv\n Name: mouse_protein_xref_pro.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_pro.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"16692\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"16692\"", "downloadurl": "/ln2data/releases/data/v-1.5.11/reviewed/mouse_protein_xref_pro.csv" }