{ "G95617FJ": { "glytoucan_ac": "G95617FJ", "mass": 2135.79, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-3-1-5-4-5/a4-b1_a6-l1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_i3-j1_i4-k1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"https://glyconnect.expasy.org/browser/proteins/2553", "id": "2553", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12239", "id": "12239", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24012", "id": "24012", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11915", "id": "G11915", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91849043", "id": "CID91849043", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252280633", "id": "SID252280633", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/7384", "id": "7384", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2640.35, "inchi_key": "DMXISQWFKKQPHD-DHVQSYECSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O[C@H]8[C@H]([C@@H]([C@@H]([C@@H](O8)C)O)O)O)NC(=O)C)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24556", "id": "24556", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=6292", "id": "6292", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=8937", "id": "8937", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851770", "id": "CID91851770", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283863", "id": "SID252283863", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1602.76, "inchi_key": "RPAXUAJPDIENRH-IRTFGHRUSA-N", "publication": [], "smiles_isomeric": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=5073", "id": "5073", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3999.01, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3/6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3/6DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3/6DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10s:n-acetyl\\n11b:a-dman-HEX-1:5\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15s:n-acetyl\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9d(2+1)10n\\n10:5o(6+1)11d\\n11:11o(2+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14d(2+1)15n\\n15:1o(6+1)16d\\nUND\\nUND1:100.0:100.0\\nParentIDs:9|14\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G52776UT", "id": "G52776UT", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21439_P", "id": "carbNlink_21439_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28986", "id": "28986", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2664.36, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": "" }, "G09276TA": { "glytoucan_ac": "G09276TA", "mass": 2296.82, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-6-2-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1", "glycoct": 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{ "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11540", "id": "11540", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10184", "id": "10184", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16239", "id": "16239", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2700.37, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], 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"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": 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"database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=17024", "id": "17024", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23496", "id": "23496", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11037", "id": "G11037", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91850008", "id": "CID91850008", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252281769", "id": "SID252281769", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1753", "id": "1753", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 5013.51, "inchi_key": "RNJJQQSSILOTSG-LREVJEOCSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1753", "id": "1753", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1753", "id": "1753", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1753", "id": "1753", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1753", "id": "1753", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1753", "id": "1753", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n\\n17:12o(4+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:1o(6+1)23d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14604", "id": "14604", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26134", "id": "26134", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854523", "id": "CID91854523", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287154", "id": "SID252287154", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3753.88, "inchi_key": "NRQMKCKAUIKBBM-UXWXGXNFSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N46", "parentid": "N32", "name": "N-glycan_a-D-Neup5Ac_46" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 1, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:b-dglc-HEX-1:5\\n17s:n-acetyl\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(3|6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:5o(4+1)16d\\n16:16d(2+1)17n\\n17:1o(6+1)18d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G71145QW", "id": "G71145QW", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1989", "id": "1989", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=36554", "id": "36554", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16179", "id": "16179", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2843.47, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G70520DS": { "glytoucan_ac": "G70520DS", "mass": 2369.86, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-4-5-4/a4-b1_a6-m1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_g6-h2_i2-j1_j3-k1_j4-l1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\n10b:b-dgal-HEX-1:5\\n11b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:a-lgal-HEX-1:5|6:d\\n17b:b-dgal-HEX-1:5\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:7o(4+1)10d\\n10:10o(6+2)11d\\n11:11d(5+1)12n\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(3+1)16d\\n16:14o(4+1)17d\\n17:1o(6+1)18d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G10835DD", "id": "G10835DD", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+31014", "id": "31014", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8850", "id": "8850", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=13767", "id": "13767", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 4605.31, "inchi_key": "", "publication": [], "smiles_isomeric": 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10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": 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"https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4788", "id": "4788", "database": "UniCarbKB" } ], "authors": 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"", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G32371XG": { "glytoucan_ac": "G32371XG", "mass": 1991.75, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,11,10/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-4-2-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:1o(6+1)16d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G32371XG", "id": "G32371XG", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7092", "id": "7092", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7094", "id": "7094", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7156", "id": "7156", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14033", "id": "14033", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25274", "id": "25274", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858713", "id": "CID91858713", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292173", "id": "SID252292173", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2482.29, "inchi_key": "IRFSNLHCXWOZBY-DUVAYPAPSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O)NC(=O)C)O)O[C@@H]6[C@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@H]([C@H](O8)CO)O)O)O)O)NC(=O)C)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C76H129N5O55/c1-18-39(97)50(108)54(112)71(119-18)117-16-25(96)59(40(98)24(7-82)77-19(2)91)129-68-36(79-21(4)93)47(105)62(32(14-89)124-68)133-74-58(116)64(45(103)34(128-74)17-118-75-65(53(111)44(102)29(11-86)123-75)135-67-35(78-20(3)92)46(104)41(99)26(8-83)120-67)134-76-66(136-70-38(81-23(6)95)49(107)61(31(13-88)126-70)132-73-56(114)52(110)43(101)28(10-85)122-73)57(115)63(33(15-90)127-76)130-69-37(80-22(5)94)48(106)60(30(12-87)125-69)131-72-55(113)51(109)42(100)27(9-84)121-72/h18,24-76,82-90,96-116H,7-17H2,1-6H3,(H,77,91)(H,78,92)(H,79,93)(H,80,94)(H,81,95)/t18-,24-,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42-,43-,44+,45+,46+,47+,48+,49+,50+,51-,52-,53-,54-,55+,56+,57-,58-,59+,60+,61+,62+,63+,64-,65-,66-,67-,68-,69-,70-,71+,72-,73-,74-,75-,76+/m0/s1" }, "G28562FF": { "glytoucan_ac": "G28562FF", "mass": 3683.31, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,18,17/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m6-n2_o4-p1_p6-q2", "glycoct": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G28562FF", "id": "G28562FF", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", 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"protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { 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"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=9791", "id": "9791", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15697", "id": "15697", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851173", "id": "CID91851173", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283153", "id": "SID252283153", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4580.31, "inchi_key": "CYPRRDBGFZMUJN-FUINTKCTSA-N", "publication": [], "smiles_isomeric": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [ { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "InChI=1S/C18H33NO14/c1-4-8(22)11(25)13(27)17(29-4)33-15-12(26)9(23)5(2-20)31-18(15)32-14-7(19)16(28)30-6(3-21)10(14)24/h4-18,20-28H,2-3,19H2,1H3/t4-,5+,6+,7+,8+,9-,10+,11+,12-,13-,14+,15+,16+,17-,18-/m0/s1" }, "G52064IJ": { "glytoucan_ac": "G52064IJ", "mass": 1478.54, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->?)[beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-3-1/a4-b1_b4-c1_d2-e1_e4-f1_g2-h1_c?-d1_c?-g1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2091", "id": "2091", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/3281", "id": "3281", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 1842.95, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G79202GR": { "glytoucan_ac": "G79202GR", "mass": 2881.03, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_l4-m1_m3-n2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G79202GR", "id": "G79202GR", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8035", "id": "8035", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9816", "id": "9816", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15722", "id": "15722", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91862377", "id": "CID91862377", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296575", "id": "SID252296575", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3595.82, "inchi_key": "FQYYCSYFCKSEEL-SCPXKHMXSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@H]([C@@H]([C@@H]([C@H](O4)O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@H]([C@@H](CO)O)[C@@H]([C@H](CO)NC(=O)C)O)CO)CO[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)CO)CO)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE87", "parentid": "N1", "name": "N-glycan_b-D-GlcNAcp_E87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE93", "parentid": "NE87", "name": "N-glycan_b-D-Galp_E93" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE100", "parentid": "NE93", "name": "N-glycan_a-D-Neu5Acp_E100" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C109H180N8O80/c1-27(131)110-35(12-118)60(146)80(42(145)16-122)184-95-57(115-32(6)136)71(157)82(48(22-128)179-95)185-98-76(162)88(69(155)52(182-98)26-173-102-92(74(160)64(150)43(17-123)177-102)190-96-58(116-33(7)137)72(158)83(49(23-129)180-96)187-100-78(164)90(67(153)45(19-125)175-100)196-108(105(168)169)10-37(140)54(112-29(3)133)86(193-108)62(148)40(143)14-120)189-103-93(191-97-59(117-34(8)138)73(159)84(50(24-130)181-97)188-101-79(165)91(68(154)46(20-126)176-101)197-109(106(170)171)11-38(141)55(113-30(4)134)87(194-109)63(149)41(144)15-121)75(161)65(151)51(183-103)25-172-94-56(114-31(5)135)70(156)81(47(21-127)178-94)186-99-77(163)89(66(152)44(18-124)174-99)195-107(104(166)167)9-36(139)53(111-28(2)132)85(192-107)61(147)39(142)13-119/h35-103,118-130,139-165H,9-26H2,1-8H3,(H,110,131)(H,111,132)(H,112,133)(H,113,134)(H,114,135)(H,115,136)(H,116,137)(H,117,138)(H,166,167)(H,168,169)(H,170,171)/t35-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66-,67-,68-,69+,70+,71+,72+,73+,74-,75-,76-,77+,78+,79+,80+,81+,82+,83+,84+,85+,86+,87+,88-,89-,90-,91-,92-,93-,94+,95-,96-,97-,98-,99-,100-,101-,102-,103+,107-,108-,109-/m0/s1" 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"CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+29244", "id": "29244", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+38489", "id": "38489", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1963", "id": "1963", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2553", "id": "2553", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1526.78, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic 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"RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:17o(4+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G48330KH", "id": "G48330KH", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional 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"detachedby": "", "id": "NE95", "parentid": "NE93", "name": "N-glycan_a-D-Neu5Acp_E95" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N46", "parentid": "N32", "name": "N-glycan_a-D-Neup5Ac_46" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", 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"B4galnt4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/3447", "id": "3447", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/1731", "id": "1731", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01229-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01229/annotated", "id": "P01229", "database": "UniCarbKB" } ], "protein_name": "Lutropin subunit beta", "gene_name": "LHB", "position": 50 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 102 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 } ], "mass_pme": 3055.55, "inchi_key": "", "publication": [ { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1731", "id": "1731", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1731", "id": "1731", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1731", "id": "1731", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1731", "id": "1731", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N69", "parentid": "N29", "name": "N-glycan_a-D-Neup5Ac_69" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"database": "UniCarbKB" } ], "protein_name": "Protein delta homolog 1", "gene_name": "Dlk1", "position": 174 } ], "mass_pme": 2582.31, "inchi_key": "", "publication": [ { "title": "Glycosylation analysis and protein structure determination of murine fetal antigen 1 (mFA1)--the circulating gene product of the delta-like protein (dlk), preadipocyte factor 1 (Pref-1) and stromal-cell-derived protein 1 (SCP-1) cDNAs.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9118998", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5606", "id": "5606", "database": "UniCarbKB" } ], "authors": "Krogh TN, Bachmann E, Teisner B, Skjodt K, Hojrup P", "date": "1997", "pmid": "9118998" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G46767VX": { "glytoucan_ac": "G46767VX", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": 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"https://pubchem.ncbi.nlm.nih.gov/substance/SID252283893", "id": "SID252283893", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1555", "id": "1555", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 5544.79, "inchi_key": "XSXDBWPRLLNHDJ-UIUOJQTJSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1555", "id": "1555", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1555", "id": "1555", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": 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"database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4792", "id": "4792", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4792", "id": "4792", "database": "UniCarbKB" } ], "authors": 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"P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 165 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 } ], "mass_pme": 2752.41, "inchi_key": "GXYBGFHDBMBHDQ-TWCUBMIGSA-N", "publication": [ { "title": "Structural elucidation of a variety of GalNAc-containing N-linked oligosaccharides from human urinary kallidinogenase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8416919", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1163", "id": "1163", "database": "UniCarbKB" } ], "authors": "Tomiya N, Awaya J, Kurono M, Hanzawa H, Shimada I, Arata Y, Yoshida T, Takahashi N", "date": "1993", "pmid": "8416919" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)NC(=O)C)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" 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"name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "InChI=1S/C80H134N4O59/c1-17-37(97)49(109)55(115)73(123-17)121-16-32-63(45(105)33(69(120)125-32)81-19(3)93)135-70-34(82-20(4)94)46(106)61(29(13-91)131-70)137-77-59(119)64(139-79-67(54(114)42(102)26(10-88)129-79)142-72-35(83-21(5)95)47(107)60(28(12-90)132-72)136-75-57(117)51(111)39(99)23(7-85)126-75)44(104)31(134-77)15-122-78-66(53(113)41(101)25(9-87)128-78)141-71-36(84-22(6)96)48(108)62(30(14-92)133-71)138-80-68(143-74-56(116)50(110)38(98)18(2)124-74)65(43(103)27(11-89)130-80)140-76-58(118)52(112)40(100)24(8-86)127-76/h17-18,23-80,85-92,97-120H,7-16H2,1-6H3,(H,81,93)(H,82,94)(H,83,95)(H,84,96)/t17-,18-,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39-,40-,41+,42+,43-,44+,45+,46+,47+,48+,49+,50+,51-,52-,53-,54-,55-,56-,57+,58+,59-,60+,61+,62+,63+,64-,65-,66-,67-,68+,69+,70-,71-,72-,73+,74-,75-,76+,77-,78-,79+,80-/m0/s1" }, 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], "inchi": "" }, "G48109OV": { "glytoucan_ac": "G48109OV", "mass": 4776.69, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,24,23/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-1-4-5-3-1-4-1-4-5-1-4-1-4-5-6/a4-b1_a6-x1_b4-c1_c3-d1_c6-m1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j1_j4-k1_k3-l2_m2-n1_m6-s1_n4-o1_o3-p1_p4-q1_q3-r2_s4-t1_t3-u1_u4-v1_v3-w2", "glycoct": 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"gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG559", "id": "GOG559", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14546", "id": "14546", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2002", "id": "2002", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26072", "id": "26072", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91849581", "id": "CID91849581", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252281274", "id": "SID252281274", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 5911.96, "inchi_key": "YEFRWYXLAAKUKP-MOOAQYNDSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1759", "id": "1759", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G53993HS", "id": "G53993HS", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11921", "id": "11921", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+45819", "id": "45819", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+46615", "id": "46615", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5097", "id": "5097", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7804", "id": "7804", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7805", "id": "7805", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7807", "id": "7807", "database": "CarbBank" }, { "url": "xxx/yyy/GOG47", "id": "GOG47", "database": "Glyco" }, { 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"uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", 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"N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", 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"count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpNAcb1-4DGalpb1-4DGlcpb1-", "number_monosaccharides": 3, "motifs": [], "inchi": "InChI=1S/C20H35NO16/c1-5(25)21-9-11(27)10(26)6(2-22)34-19(9)36-17-8(4-24)35-20(15(31)13(17)29)37-16-7(3-23)33-18(32)14(30)12(16)28/h6-20,22-24,26-32H,2-4H2,1H3,(H,21,25)/t6-,7-,8-,9-,10+,11-,12-,13-,14-,15-,16-,17+,18-,19+,20+/m1/s1" }, "G93816OI": { "glytoucan_ac": "G93816OI", "mass": 3027.08, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": 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"DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09327-1", "gene": "MGAT3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", 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"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+29109", "id": "29109", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+30808", "id": "30808", "database": "CarbBank" }, { "url": "xxx/yyy/GOG225", "id": "GOG225", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8759", "id": "8759", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1287", "id": "1287", "database": "GlyConnect" }, { "url": 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}, { "uniprot_canonical_ac": "Q9JJW1-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q9JJW1/annotated", "id": "Q9JJW1", "database": "UniCarbKB" } ], "protein_name": "Tetraspanin-2", "gene_name": "", "position": 139 } ], "mass_pme": 2088.07, "inchi_key": "NJMHOTZUOLYJOC-ZZBLBEGESA-N", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2663", "id": "2663", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" } ], "smiles_isomeric": 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"N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", 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{ "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 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"N28", "name": "N-glycan_a-D-Neup5Ac_33" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE10", "parentid": "N7", "name": "N-glycan_a-D-Neu5Acp_E10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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"attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE37", "parentid": "N32", "name": "N-glycan_b-D-Galp_E37" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C88H149N5O65/c1-20-43(111)55(123)60(128)81(137-20)135-18-27(110)67(44(112)26(7-94)89-21(2)105)149-77-39(90-22(3)106)51(119)71(35(15-102)143-77)154-86-66(134)74(156-88-75(59(127)48(116)31(11-98)142-88)157-79-41(92-24(5)108)53(121)68(33(13-100)145-79)151-82-61(129)56(124)45(113)28(8-95)138-82)50(118)38(148-86)19-136-87-76(158-80-42(93-25(6)109)54(122)69(34(14-101)146-80)152-83-62(130)57(125)46(114)29(9-96)139-83)64(132)72(37(17-104)147-87)150-78-40(91-23(4)107)52(120)70(36(16-103)144-78)153-85-65(133)73(49(117)32(12-99)141-85)155-84-63(131)58(126)47(115)30(10-97)140-84/h20,26-88,94-104,110-134H,7-19H2,1-6H3,(H,89,105)(H,90,106)(H,91,107)(H,92,108)(H,93,109)/t20-,26-,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45-,46-,47-,48+,49-,50+,51+,52+,53+,54+,55+,56-,57-,58-,59-,60-,61+,62+,63+,64-,65+,66-,67+,68+,69+,70+,71+,72+,73-,74-,75-,76-,77-,78-,79-,80-,81+,82-,83-,84-,85-,86-,87-,88+/m0/s1" }, "G00800WJ": { "glytoucan_ac": "G00800WJ", "mass": 2733.97, "iupac": "alpha-D-NeupAc-(2->3),alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->?)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->?)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-3-1-4-6-5/a4-b1_a6-m1_b4-c1_e4-f1_f3-g2_h4-i1_j2-k1_k4-l1_n2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3}_c?-d1_c?-j1_d?-e1_d?-h1", "glycoct": 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"name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2590", "id": "2590", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/7151", "id": "7151", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P40225-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P40225/annotated", "id": "P40225", "database": "UniCarbKB" } ], "protein_name": "Thrombopoietin", "gene_name": "THPO", "position": 197 } ], "mass_pme": 3392.71, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/3483", "id": "3483", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 5101.56, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2007", "id": "2007", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 8, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 21, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G16986CA": { "glytoucan_ac": "G16986CA", "mass": 2881.03, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_l4-m1_m6-n2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G16986CA", "id": "G16986CA", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91851179", "id": "CID91851179", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283161", "id": "SID252283161", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "YEYCBKHEBDJPNM-HKIMPYLRSA-N", "publication": [], "smiles_isomeric": 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"name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"846", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=7867", "id": "7867", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12385", "id": "12385", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846375", "id": "CID91846375", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277437", "id": "SID252277437", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1321.7, "inchi_key": "WOMNPHQKTVQVAF-RCLCYYLISA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@H]([C@@H]([C@@H]([C@H](CO)NC(=O)C)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)O)NC(=O)C)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic 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[ { "url": "https://glytoucan.org/Structures/Glycans/G56861GL", "id": "G56861GL", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10730", "id": "10730", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=7733", "id": "7733", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12211", "id": "12211", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2524.27, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+18742", "id": "18742", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2959", "id": "2959", "database": "CarbBank" }, { "url": "xxx/yyy/GOG54", "id": "GOG54", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=3115", "id": "3115", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/244", "id": "244", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16601", "id": "16601", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23636", "id": "23636", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4176", "id": "4176", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10747", "id": "G10747", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861171", "id": "CID91861171", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295120", "id": "SID252295120", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1265", "id": "1265", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01011-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01011/annotated", "id": "P01011", "database": "UniCarbKB" } ], "protein_name": "Alpha-1-antichymotrypsin", "gene_name": "SERPINA3", "position": 93 }, { "uniprot_canonical_ac": "P01011-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01011/annotated", "id": "P01011", "database": "UniCarbKB" } ], "protein_name": "Alpha-1-antichymotrypsin", "gene_name": "SERPINA3", "position": 127 } ], "mass_pme": 3218.62, "inchi_key": "QEKBMUHRNRESAN-NUBBTIDJSA-N", "publication": [ { "title": "Structure determination of the glycans of human-serum alpha 1-antichymotrypsin using 1H-NMR spectroscopy and deglycosylation by N-glycanase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2015821", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1265", "id": "1265", "database": "UniCarbKB" } ], "authors": "Laine A, Hachulla E, Strecker G, Michalski JC, Wieruszeski JM", "date": "1991", "pmid": "2015821" } ], "smiles_isomeric": 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"id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1238", "id": "1238", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 3364.71, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4806", "id": "4806", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, 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"http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3408.54, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5164", "id": "5164", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5164", "id": "5164", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-4[DGalp[3S]b1-4DGlcpNAcb1-2]DManpa1-3[DGalp[3S]b1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G58350LJ": { "glytoucan_ac": "G58350LJ", "mass": 2007.74, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,11,10/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-5-4-2-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_j4-k1", "glycoct": 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"UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { 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"N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-4DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1113", "id": "1113", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1113", "id": "1113", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by 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"iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,17,16/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:17o(6+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G09020HN", "id": "G09020HN", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44251_D000", "id": "carbNlink_44251_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44835_D000", "id": "carbNlink_44835_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=19640", "id": "19640", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G03720", "id": "G03720", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861603", "id": "CID91861603", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295635", "id": "SID252295635", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "AXBFKUMGJMMYGI-RQAJSJKSSA-N", "publication": [], "smiles_isomeric": 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"Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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}, "G22732RT": { "glytoucan_ac": "G22732RT", "mass": 2166.78, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->3)[alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/5,12,11/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-5-2-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g3-h1_g4-i1_i3-j1_j3-k1_k2-l1", "glycoct": 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}, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9997", "id": "9997", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15948", "id": "15948", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2685.36, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00053MO", "name": "Sialyl Lewis A" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00068MO", "name": "Blood group H" }, { "id": "G00069MO", "name": "Glycosphingolipid Lacto series" } ], "inchi": "" }, "G27170NH": { "glytoucan_ac": "G27170NH", "mass": 1771.65, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,9,8/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G27170NH", "id": "G27170NH", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\n20b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:16o(3+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d\\n19:1o(6+1)20d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": "B3GNT8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG502", "id": "GOG502", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14189", "id": "14189", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25609", "id": "25609", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91847117", "id": "CID91847117", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252278334", "id": "SID252278334", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3119.59, "inchi_key": "LAPUCFKAOYHMGA-HRKVOHKCSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N62", "parentid": "N3", "name": "N-glycan_b-D-GlcpNAc_62" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N63", "parentid": "N62", "name": "N-glycan_b-D-Galp_63" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "InChI=1S/C96H160N6O70/c1-21-47(120)61(134)66(139)89(148-21)146-20-40-77(55(128)41(83(145)149-40)97-22(2)114)162-84-42(98-23(3)115)56(129)76(36(16-111)156-84)167-94-71(144)80(170-96-82(65(138)51(124)31(11-106)155-96)172-88-46(102-27(7)119)60(133)75(38(18-113)160-88)166-93-70(143)79(53(126)33(13-108)153-93)169-86-44(100-25(5)117)58(131)73(35(15-110)158-86)164-91-68(141)63(136)49(122)29(9-104)151-91)54(127)39(161-94)19-147-95-81(64(137)50(123)30(10-105)154-95)171-87-45(101-26(6)118)59(132)74(37(17-112)159-87)165-92-69(142)78(52(125)32(12-107)152-92)168-85-43(99-24(4)116)57(130)72(34(14-109)157-85)163-90-67(140)62(135)48(121)28(8-103)150-90/h21,28-96,103-113,120-145H,8-20H2,1-7H3,(H,97,114)(H,98,115)(H,99,116)(H,100,117)(H,101,118)(H,102,119)/t21-,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48-,49-,50+,51+,52-,53-,54+,55+,56+,57+,58+,59+,60+,61+,62-,63-,64-,65-,66-,67+,68+,69+,70+,71-,72+,73+,74+,75+,76+,77+,78-,79-,80-,81-,82-,83+,84-,85-,86-,87-,88-,89+,90-,91-,92-,93-,94-,95-,96+/m0/s1" }, "G60542VK": { "glytoucan_ac": "G60542VK", "mass": 2953.05, "iupac": "alpha-D-NeupAc-(2->3),alpha-D-NeupAc-(2->3),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-4-3-1-4-1-4-5-5/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1_n2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3}_o2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:13o(6+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|14|16|17|19\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n20b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n21s:n-acetyl\\nLIN\\n19:20d(5+1)21n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|14|16|17|19\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n22b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n23s:n-acetyl\\nLIN\\n20:22d(5+1)23n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2683", "id": "2683", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1320", "id": "1320", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2683", "id": "2683", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P14210-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P14210/annotated", "id": "P14210", "database": "UniCarbKB" } ], "protein_name": "Hepatocyte growth factor", "gene_name": "HGF", "position": 294 } ], "mass_pme": 3667.85, "inchi_key": "", "publication": [ { "title": "Structural study of the N-linked oligosaccharides of hepatocyte growth factor by two-dimensional sugar mapping.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8407880", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2683", "id": "2683", "database": "UniCarbKB" } ], "authors": "Hara H, Nakae Y, Sogabe T, Ihara I, Ueno S, Sakai H, Inoue H, Shimizu S, Nakamura T, Shimizu N", "date": "1993", "pmid": "8407880" }, { "title": "Hepatocyte growth factor is linked by O-glycosylated oligosaccharide on the alpha chain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1482348", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2683", "id": "2683", "database": "UniCarbKB" } ], "authors": "Shimizu N, Hara H, Sogabe T, Sakai H, Ihara I, Inoue H, Nakamura T, Shimizu S", "date": "1992", "pmid": "1482348" } ], "smiles_isomeric": "", 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"P01229", "database": "UniCarbKB" } ], "protein_name": "Lutropin subunit beta", "gene_name": "LHB", "position": 50 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 } ], "mass_pme": 2689.28, "inchi_key": "ZVFLWPQOJGDREB-FANADEPSSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1543", "id": "1543", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1543", "id": "1543", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1543", "id": "1543", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)OS(=O)(=O)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": 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glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7782", "id": "7782", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7782", "id": "7782", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7782", "id": "7782", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G47870LR": { "glytoucan_ac": "G47870LR", "mass": 2093.74, "iupac": 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"Knirel YA, Kocharova NA, Hynes SO, Widmalm G, Andersen LP, Jansson PE, Moran AP", "date": "1999", "pmid": "10542057" }, { "title": "N-glycan structures of matrix metalloproteinase-1 derived from human fibroblasts and from HT-1080 fibrosarcoma cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10092871", "journal": "European journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Saarinen J, Welgus HG, Flizar CA, Kalkkinen N, Helin J", "date": "1999", "pmid": "10092871" }, { "title": "Molecular genetic basis for the variable expression of Lewis Y antigen in Helicobacter pylori: analysis of the alpha (1,2) fucosyltransferase gene.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10096092", "journal": "Molecular microbiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Wang G, Rasko DA, Sherburne R, Taylor DE", "date": "1999", "pmid": "10096092" }, { "title": "Simultaneous expression of type 1 and type 2 Lewis blood group antigens by Helicobacter pylori lipopolysaccharides. Molecular mimicry between h. pylori lipopolysaccharides and human gastric epithelial cell surface glycoforms.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9565568", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Monteiro MA, Chan KH, Rasko DA, Taylor DE, Zheng PY, Appelmelk BJ, Wirth HP, Yang M, Blaser MJ, Hynes SO, Moran AP, Perry MB", "date": "1998", "pmid": "9565568" }, { "title": "Lewis X biosynthesis in Helicobacter pylori. Molecular cloning of an alpha(1,3)-fucosyltransferase gene.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9261148", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Martin SL, Edbrooke MR, Hodgman TC, van den Eijnden DH, Bird MI", "date": "1997", "pmid": "9261148" }, { "title": "Expression of leukocyte fucosyltransferases regulates binding to E-selectin: relationship to previously implicated carbohydrate epitopes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9257857", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Wagers AJ, Stoolman LM, Kannagi R, Craig R, Kansas GS", "date": "1997", "pmid": "9257857" }, { "title": "A carbohydrate structure associated with CD15 (Lewis x) on myeloid cells is a novel ligand for human CD2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8609406", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Warren HS, Altin JG, Waldron JC, Kinnear BF, Parish CR", "date": "1996", "pmid": "8609406" }, { "title": "Origin of primordial germ cells in the prestreak chick embryo.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9023982", "journal": "Developmental genetics", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Karagenc L, Cinnamon Y, Ginsburg M, Petitte JN", "date": "1996", "pmid": "9023982" }, { "title": "Detection in human blood platelets of sialyl Lewis X gangliosides, potential ligands for CD62 and other selectins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8563144", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Cooling LL, Zhang DS, Walker KE, Koerner TA", "date": "1995", "pmid": "8563144" }, { "title": "The biosynthesis of Lewis X in Helicobacter pylori.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8608270", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Chan NW, Stangier K, Sherburne R, Taylor DE, Zhang Y, Dovichi NJ, Palcic MM", "date": "1995", "pmid": "8608270" }, { "title": "Reactivity profiles of leukemic myeloblasts with monoclonal antibodies directed to sialosyl-Le(x) and other lacto-series type 2 chain antigens:absence of reactivity with normal hematopoietic progenitor cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1370643", "journal": "Blood", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Muroi K, Suda T, Nojiri H, Ema H, Amemiya Y, Miura Y, Nakauchi H, Singhal A, Hakomori S", "date": "1992", "pmid": "1370643" }, { "title": "Immunohistochemical demonstration of glycoconjugates bearing the type 2 chain-backbone structure in human fetal, normal and neoplastic gastrointestinal tract.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1618643", "journal": "Histochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Nakayama J, Ota H, Katsuyama T, Kanai M, Taki T, Hirabayashi Y, Suzuki Y", "date": "1992", "pmid": "1618643" }, { "title": "Characterization of a novel Le(x)-active ganglioside from chick intestinal tissues recognized by murine monoclonal antibody 188C1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1674743", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Hirabayashi Y, Fujita SC, Kon K, Ando S", "date": "1991", "pmid": "1674743" }, { "title": "Extended type 1 chain glycosphingolipids: dimeric Lea (III4V4Fuc2Lc6) as human tumor-associated antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2022659", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Stroud MR, Levery SB, Nudelman ED, Salyan ME, Towell JA, Roberts CE, Watanabe M, Hakomori S", "date": "1991", "pmid": "2022659" }, { "title": "Qualitative difference of subcellular localization of tumor-associated carbohydrate (Le(x)) antigens in renal cell carcinoma and normal kidney.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1672317", "journal": "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Ohtani H, Fukushi Y, Orikasa S, Nagura H", "date": "1991", "pmid": "1672317" }, { "title": "Expression of CD15 as predictor of relapse in children with acute lymphoblastic leukemia of the pre-B type.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1674292", "journal": "Leukemia research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Lenkei R, Bjork O, Ost A, Biberfeld P", "date": "1991", "pmid": "1674292" }, { "title": "Immunohistochemical localization of the carbohydrate antigen 4C9 in the mouse embryo: a reliable marker of mouse primordial germ cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1773918", "journal": "Differentiation; research in biological diversity", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Yoshinaga K, Muramatsu H, Muramatsu T", "date": "1991", "pmid": "1773918" }, { "title": "Profiles of Lewisx-containing glycoproteins and glycolipids in sera of patients with adenocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2302702", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Singhal AK, Orntoft TF, Nudelman E, Nance S, Schibig L, Stroud MR, Clausen H, Hakomori S", "date": "1990", "pmid": "2302702" }, { "title": "Specific interaction between Lex and Lex determinants. A possible basis for cell recognition in preimplantation embryos and in embryonal carcinoma cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2470757", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Eggens I, Fenderson B, Toyokuni T, Dean B, Stroud M, Hakomori S", "date": "1989", "pmid": "2470757" }, { "title": "Aberrant glycosylation in tumors and tumor-associated carbohydrate antigens.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2662714", "journal": "Advances in cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Hakomori S", "date": "1989", "pmid": "2662714" }, { "title": "Monoclonal antibodies that bind to galactosylgloboside (SSEA-3 antigen).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3364985", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Marcus DM, Gilbert S, Sekine M, Suzuki A", "date": "1988", "pmid": "3364985" }, { "title": "Oncofetal expression of Lex carbohydrate antigens in human colonic adenocarcinomas. Regulation through type 2 core chain synthesis rather than fucosylation.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3112156", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Holmes EH, Ostrander GK, Clausen H, Graem N", "date": "1987", "pmid": "3112156" }, { "title": "Synthesis of type 1 and 2 lacto series glycolipid antigens in human colonic adenocarcinoma and derived cell lines is due to activation of a normally unexpressed beta 1----3N-acetylglucosaminyltransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2960671", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Holmes EH, Hakomori S, Ostrander GK", "date": "1987", "pmid": "2960671" }, { "title": "Human hepatocellular carcinoma-associated changes of glycosphingolipids detected by two monoclonal antibodies FH2 and IB9.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2424969", "journal": "Journal of hepatology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Okada Y, Arima T, Nagashima H, Fukushi Y, Kannagi R, Kaizu T", "date": "1986", "pmid": "2424969" }, { "title": "An anti-carbohydrate monoclonal antibody inhibits cell-substratum adhesion of F9 embryonal carcinoma cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3754220", "journal": "Experimental cell research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Nomoto S, Muramatsu H, Ozawa M, Suganuma T, Tashiro M, Muramatsu T", "date": "1986", "pmid": "3754220" }, { "title": "Differences in the fine specificities of monoclonal (Class A) antibodies to human myeloid cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2408796", "journal": "Clinical and experimental immunology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Gooi HC, Hounsell EF, Edwards A, Majdic O, Knapp W, Feizi T", "date": "1985", "pmid": "2408796" }, { "title": "Lea-active heptaglycosylceramide, a hybrid of type 1 and type 2 chain, and the pattern of glycolipids with Lea, Leb, X (Lex), and Y (Ley) determinants in human blood cell membranes (ghosts). Evidence that type 2 chain can elongate repetitively but type 1 chain cannot.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3997830", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Kannagi R, Levery SB, Hakomori S", "date": "1985", "pmid": "3997830" }, { "title": "Novel fucolipids accumulating in human adenocarcinoma. II. Selective isolation of hybridoma antibodies that differentially recognize mono-, di-, and trifucosylated type 2 chain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6200484", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Fukushi Y, Hakomori S, Nudelman E, Cochran N", "date": "1984", "pmid": "6200484" }, { "title": "A granulocyte reactive monoclonal antibody, 1G10, identifies the Gal beta 1-4 (Fuc alpha 1-3)GlcNAc (X determinant) expressed in HL-60 cells on both glycolipid and glycoprotein molecules.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6194834", "journal": "Blood", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Urdal DL, Brentnall TA, Bernstein ID, Hakomori SI", "date": "1983", "pmid": "6194834" }, { "title": "Many monoclonal antibodies with an apparent specificity for certain lung cancers are directed against a sugar sequence found in lacto-N-fucopentaose III.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6830241", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Huang LC, Brockhaus M, Magnani JL, Cuttitta F, Rosen S, Minna JD, Ginsburg V", "date": "1983", "pmid": "6830241" }, { "title": "Glycosphingolipids as tumor-associated and differentiation markers.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6576183", "journal": "Journal of the National Cancer Institute", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Hakomori S, Kannagi R", "date": "1983", "pmid": "6576183" }, { "title": "My-1, the human myeloid-specific antigen detected by mouse monoclonal antibodies, is a sugar sequence found in lacto-N-fucopentaose III.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6187397", "journal": "Blood", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Huang LC, Civin CI, Magnani JL, Shaper JH, Ginsburg V", "date": "1983", "pmid": "6187397" }, { "title": "Monoclonal antibodies that demonstrate specificity for several types of human lung cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6270685", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00051MO", "id": "G00051MO", "database": "GlyTouCan" } ], "authors": "Cuttitta F, Rosen S, Gazdar AF, Minna JD", "date": "1981", "pmid": "6270685" }, { "title": "The hapten structure of a developmentally regulated glycolipid antigen (SSEA-1) isolated from human erythrocytes and adenocarcinoma: a preliminary note.", "url": 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"Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG491", "id": "GOG491", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14089", "id": "14089", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25473", "id": "25473", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853110", "id": "CID91853110", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285458", "id": "SID252285458", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "HQCFOHAMCINFRO-YHXDWAKOSA-N", "publication": [], "smiles_isomeric": 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"no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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{ "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1693", "id": "1693", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 699.37, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G56749GV": { "glytoucan_ac": "G56749GV", "mass": 2368.84, "iupac": 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"Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14610", "id": "14610", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26140", "id": "26140", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854977", "id": "CID91854977", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287703", "id": "SID252287703", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3753.88, "inchi_key": "IMOJDIYZZIGSON-IIHQQDPUSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE6", "parentid": "N32", "name": "N-glycan_a-D-Neu5Acp_E6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C115H188N8O84/c1-27-61(148)75(162)79(166)103(183-27)179-24-52-90(70(157)56(98(172)184-52)119-31(5)137)196-100-58(121-33(7)139)72(159)87(46(20-131)188-100)199-106-83(170)94(201-109-96(78(165)65(152)42(16-127)186-109)202-101-59(122-34(8)140)73(160)86(45(19-130)189-101)198-105-81(168)77(164)67(154)51(194-105)26-182-114(111(175)176)11-37(143)54(117-29(3)135)92(205-114)63(150)40(146)14-125)69(156)49(192-106)23-180-108-97(203-102-60(123-35(9)141)74(161)88(47(21-132)190-102)200-107-84(171)95(68(155)43(17-128)185-107)207-115(112(177)178)12-38(144)55(118-30(4)136)93(206-115)64(151)41(147)15-126)82(169)89(48(22-133)191-108)195-99-57(120-32(6)138)71(158)85(44(18-129)187-99)197-104-80(167)76(163)66(153)50(193-104)25-181-113(110(173)174)10-36(142)53(116-28(2)134)91(204-113)62(149)39(145)13-124/h27,36-109,124-133,142-172H,10-26H2,1-9H3,(H,116,134)(H,117,135)(H,118,136)(H,119,137)(H,120,138)(H,121,139)(H,122,140)(H,123,141)(H,173,174)(H,175,176)(H,177,178)/t27-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66-,67-,68-,69+,70+,71+,72+,73+,74+,75+,76-,77-,78-,79-,80+,81+,82-,83-,84+,85+,86+,87+,88+,89+,90+,91+,92+,93+,94-,95-,96-,97-,98+,99-,100-,101-,102-,103+,104-,105-,106-,107-,108-,109+,113+,114+,115-/m0/s1" }, "G02456AL": { "glytoucan_ac": "G02456AL", "mass": 2077.75, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->?)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1_i?-j2", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n15s:n-acetyl\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(2+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:13o(-1+2)14d\\n14:14d(5+1)15n\\n15:1o(6+1)16d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G02456AL", "id": "G02456AL", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+40548", "id": "40548", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=16721", "id": "16721", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2582.31, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core 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"Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P21217-1", "gene": "FUT3", "gene_link": "", "protein_name": "Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { 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"gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13315", "id": "13315", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2083", "id": "2083", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2986", "id": "2986", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2989", "id": "2989", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7992", "id": "7992", "database": "CarbBank" }, { "url": "xxx/yyy/GOG13", "id": "GOG13", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=222", "id": "222", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2606", "id": "2606", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22988", "id": "22988", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=275", "id": "275", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11135", "id": "G11135", "database": "KEGG Glycan" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G12106", "id": "G12106", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91857043", "id": "CID91857043", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252290173", "id": "SID252290173", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/7711", "id": "7711", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3119.59, "inchi_key": "AAHYMNJLDQLIQL-AZNHFQONSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)CO)O[C@@H]4[C@H](O[C@@H]([C@H]([C@H]4O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)NC(=O)C)O[C@H]7[C@@H]([C@H](O[C@H]([C@H]7O)O[C@@H]8[C@H](O[C@H]([C@@H]([C@H]8O)NC(=O)C)O[C@@H]9[C@H](O[C@H]([C@@H]([C@H]9O)NC(=O)C)O)CO)CO)CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)CO)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N18", "parentid": "N7", "name": "N-glycan_a-L-Fucp_18" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": 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"InChI=1S/C96H160N6O70/c1-21-47(120)59(132)65(138)89(148-21)169-79-46(102-27(7)119)88(158-38(18-113)78(79)168-93-69(142)63(136)51(124)31(11-106)153-93)163-77-37(17-112)159-96(82(70(77)143)172-87-45(101-26(6)118)58(131)75(35(15-110)157-87)166-92-68(141)62(135)50(123)30(10-105)152-92)170-80-53(126)40(160-94(71(80)144)167-76-36(16-111)155-85(43(56(76)129)99-24(4)116)162-72-32(12-107)149-83(145)41(54(72)127)97-22(2)114)20-147-95-81(171-86-44(100-25(5)117)57(130)74(34(14-109)156-86)165-91-67(140)61(134)49(122)29(9-104)151-91)64(137)52(125)39(161-95)19-146-84-42(98-23(3)115)55(128)73(33(13-108)154-84)164-90-66(139)60(133)48(121)28(8-103)150-90/h21,28-96,103-113,120-145H,8-20H2,1-7H3,(H,97,114)(H,98,115)(H,99,116)(H,100,117)(H,101,118)(H,102,119)/t21-,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48-,49-,50-,51-,52+,53+,54+,55+,56+,57+,58+,59+,60-,61-,62-,63-,64-,65-,66+,67+,68+,69+,70-,71-,72+,73+,74+,75+,76+,77+,78+,79+,80-,81-,82-,83+,84+,85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,96+/m0/s1" }, "G58995TS": { "glytoucan_ac": "G58995TS", "mass": 1398.5, "iupac": "alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/4,8,7/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-4-4-4-4/a4-b1_b4-c1_c3-d1_c6-e1_e3-f1_e6-g1_g2-h1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:a-dman-HEX-1:5\\n9b:a-dman-HEX-1:5\\n10b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(6+1)7d\\n7:7o(3+1)8d\\n8:7o(6+1)9d\\n9:9o(2+1)10d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G58995TS", "id": "G58995TS", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9BV10-1", "gene": "ALG12", "gene_link": "", "protein_name": "Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q92685-1", "gene": "ALG3", "gene_link": "", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2024", "id": "2024", "database": "CarbBank" }, { "url": "xxx/yyy/GOG77", "id": "GOG77", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5661", "id": "5661", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/185", "id": "185", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23910", "id": "23910", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=8069", "id": "8069", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10721", "id": "G10721", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91850519", "id": "CID91850519", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252282376", "id": "SID252282376", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1261", "id": "1261", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3218.62, "inchi_key": "PVQZZQWXHPOYSI-JGHNGCCPSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1261", "id": "1261", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1261", "id": "1261", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"G43242DB", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", 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"detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { 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"name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G40064GR": { "glytoucan_ac": "G40064GR", "mass": 2513.88, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)[alpha-D-NeupAc-(2->6)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": 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"N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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Histochemical journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G99315PE", "id": "G99315PE", "database": "GlyTouCan" } ], "authors": "Kurimoto S, Moriyama N, Takata K, Nozawa S, Aso Y, Hirano H", "date": "1995", "pmid": "7797428" }, { "title": "Human cervical epidermal carcinoma-associated intracellular localization of glycosphingolipid with blood group A type 3 chain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8340255", "journal": "Japanese journal of cancer research : Gann", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G99315PE", "id": "G99315PE", "database": "GlyTouCan" } ], "authors": "Cui Y, Noguchi H, Kiguchi K, Aoki D, Susumu N, Nozawa S, Kawakami H, Hirano H, Iwamori M", "date": "1993", "pmid": "8340255" }, { "title": "Structural variations of blood group A antigens in human normal colon and carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2446741", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G99315PE", "id": "G99315PE", "database": "GlyTouCan" } ], "authors": "Dabelsteen E, Graem N, Clausen H, Hakomori S", "date": "1988", "pmid": "2446741" }, { "title": "Islet beta-cytotoxic monoclonal antibody against glycolipids in experimental diabetes induced by low dose streptozotocin and Freund's adjuvant.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2967328", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G99315PE", "id": "G99315PE", "database": "GlyTouCan" } ], "authors": "Ziegler M, Teneberg S, Witt S, Ziegler B, Hehmke B, Kohnert KD, Egeberg J, Karlsson KA, Lernmark A", "date": "1988", "pmid": "2967328" }, { "title": "Further characterization of type 2 and type 3 chain blood group A glycosphingolipids from human erythrocyte membranes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3801409", "journal": "Biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G99315PE", "id": "G99315PE", "database": "GlyTouCan" } ], "authors": "Clausen H, Levery SB, Nudelman E, Baldwin M, Hakomori S", "date": "1986", "pmid": "3801409" }, { "title": "Repetitive A epitope (type 3 chain A) defined by blood group A1-specific monoclonal antibody TH-1: chemical basis of qualitative A1 and A2 distinction.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2579390", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G99315PE", "id": "G99315PE", "database": "GlyTouCan" } ], "authors": "Clausen H, Levery SB, Nudelman E, Tsuchiya S, Hakomori S", "date": "1985", "pmid": "2579390" }, { "title": "Analysis of the specificity of five murine anti-blood group A monoclonal antibodies, including one that identifies type 3 and type 4 A determinants.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2418872", "journal": "Biochemistry", 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91854647", "id": "CID91854647", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287301", "id": "SID252287301", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1725", "id": "1725", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01229-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01229/annotated", "id": "P01229", "database": "UniCarbKB" } ], "protein_name": "Lutropin subunit beta", "gene_name": "LHB", "position": 50 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 102 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 } ], "mass_pme": 2810.42, "inchi_key": "IZEIPNDGOAPKJT-UHXKUAGDSA-N", "publication": [ { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1725", "id": "1725", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1725", "id": "1725", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1725", "id": "1725", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1180", "id": "1180", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/7692", "id": "7692", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P04070-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04070/annotated", "id": "P04070", "database": "UniCarbKB" } ], "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "position": 355 }, { "uniprot_canonical_ac": "P04070-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04070/annotated", "id": "P04070", "database": "UniCarbKB" } ], "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "position": 371 }, { "uniprot_canonical_ac": "P04070-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04070/annotated", "id": "P04070", "database": "UniCarbKB" } ], "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "position": 139 }, { "uniprot_canonical_ac": "P04070-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04070/annotated", "id": "P04070", "database": "UniCarbKB" } ], "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "position": 290 } ], "mass_pme": 2810.42, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7692", "id": "7692", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7692", "id": "7692", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7692", "id": "7692", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G61088TM": { "glytoucan_ac": "G61088TM", "mass": 2192.81, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-3-1-1-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-k1", "glycoct": 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"InChI=1S/C84H140N6O60/c1-19-43(105)56(118)60(122)79(131-19)129-18-36-69(52(114)37(73(127)132-36)85-20(2)99)144-77-41(89-24(6)103)54(116)67(32(14-97)138-77)147-82-64(126)70(49(111)35(141-82)17-130-83-71(149-75-39(87-22(4)101)51(113)45(107)27(9-92)134-75)59(121)48(110)34(142-83)16-128-74-38(86-21(3)100)50(112)44(106)26(8-91)133-74)148-84-72(150-78-42(90-25(7)104)55(117)66(31(13-96)139-78)146-81-62(124)58(120)47(109)29(11-94)136-81)63(125)68(33(15-98)140-84)143-76-40(88-23(5)102)53(115)65(30(12-95)137-76)145-80-61(123)57(119)46(108)28(10-93)135-80/h19,26-84,91-98,105-127H,8-18H2,1-7H3,(H,85,99)(H,86,100)(H,87,101)(H,88,102)(H,89,103)(H,90,104)/t19-,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48+,49+,50+,51+,52+,53+,54+,55+,56+,57-,58-,59-,60-,61+,62+,63-,64-,65+,66+,67+,68+,69+,70-,71-,72-,73+,74+,75-,76-,77-,78-,79+,80-,81-,82-,83-,84+/m0/s1" }, "G19615BB": { "glytoucan_ac": "G19615BB", "mass": 2240.82, "iupac": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16641", "id": "16641", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1856.96, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00053MO", "name": "Sialyl Lewis A" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G36066DO": { "glytoucan_ac": "G36066DO", "mass": 2442.88, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-3-1-4-6-7/a4-b1_a6-m1_b4-c1_c3-d1_c6-i1_d2-e1_d4-h1_e4-f1_f6-g2_i2-j1_j4-k1_k3-l1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\n18b:a-dgal-HEX-1:5\\n19b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:5o(6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(4+1)17d\\n17:17o(3+1)18d\\n18:1o(6+1)19d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "P38649-1", "gene": "Abo", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { 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"attachedby": "rxn.P16442-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N50", "parentid": "N6", "name": "N-glycan_a-D-Galp_50" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpa1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"gene_name": "TIMP1", "position": 101 } ], "mass_pme": 1812.94, "inchi_key": "", "publication": [ { "title": "Site-specific characterization of glycoprotein carbohydrates by exoglycosidase digestion and laser desorption mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8053566", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3461", "id": "3461", "database": "UniCarbKB" } ], "authors": "Sutton CW, O'Neill JA, Cottrell JS", "date": "1994", "pmid": "8053566" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" } ], "inchi": "" }, "G60439QY": { "glytoucan_ac": "G60439QY", "mass": 3535.24, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,17,16/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-1-4-5-3-1-4-5-1-4-5/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": 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"uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", 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2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 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"GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2298", "id": "2298", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23819", "id": "23819", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854754", "id": "CID91854754", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287433", "id": "SID252287433", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1535", "id": "1535", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { 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1----4GlcNAc beta 1----3Gal beta 1----R) which is highly expressed in colonic and hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2551493", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00058MO", "id": "G00058MO", "database": "GlyTouCan" } ], "authors": "Miyake M, Kohno N, Nudelman ED, Hakomori S", "date": "1989", "pmid": "2551493" }, { "title": "A human monoclonal antibody directed to blood group i antigen: heterohybridoma between human lymphocytes from regional lymph nodes of a lung cancer patient and mouse myeloma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2422274", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00058MO", "id": "G00058MO", "database": "GlyTouCan" } ], "authors": "Hirohashi S, Clausen H, Nudelman E, Inoue H, Shimosato Y, Hakomori S", "date": "1986", "pmid": "2422274" }, { "title": "A monoclonal antibody defining a binary N-acetyllactosaminyl structure in lactoisooctaosylceramide (IV6Gal beta 1----4GlcNAcnLc6): a useful probe for determining differential glycosylation patterns between normal and transformed human fibroblasts.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3796623", "journal": "Molecular immunology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00058MO", "id": "G00058MO", "database": "GlyTouCan" } ], "authors": "Fenderson BA, Nichols EJ, Clausen H, Hakomori SI", "date": "1986", "pmid": "3796623" }, { "title": "Further studies of the specificities of monoclonal anti-i and anti-I antibodies using chemically synthesized, linear oligosaccharides of the poly-N-acetyllactosamine series.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6083447", "journal": "Molecular immunology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00058MO", "id": "G00058MO", "database": "GlyTouCan" } ], "authors": "Gooi HC, Veyrieres A, Alais J, Scudder P, Hounsell EF, 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cells express fetal type (i) antigen on different glycoproteins from circulating erythrocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6770273", "journal": "Nature", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00058MO", "id": "G00058MO", "database": "GlyTouCan" } ], "authors": "Fukuda M", "date": "1980", "pmid": "6770273" }, { "title": "I and i antigens of human peripheral blood lymphocytes cocap with receptors for concanavalin A.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6987651", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00058MO", "id": "G00058MO", "database": "GlyTouCan" } ], "authors": "Feizi T, Kapadia A, Yount WJ", "date": "1980", "pmid": "6987651" }, { "title": "Developmental change and genetic defect in the carbohydrate structure of band 3 glycoprotein of human erythrocyte membrane.", "url": 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], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 241 } ], "mass_pme": 3579.79, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7867", "id": "7867", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7867", "id": "7867", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": 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"uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10697", "id": "10697", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11719", "id": "11719", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12773", "id": "12773", "database": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+7698", "id": "7698", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7772", "id": "7772", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9352", "id": "9352", "database": "CarbBank" }, { "url": "xxx/yyy/GOG4", "id": "GOG4", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=190", "id": "190", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1480", "id": "1480", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=14188", "id": "14188", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22957", "id": "22957", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=243", "id": "243", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2932", "id": "2932", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3425", "id": "3425", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3470", "id": "3470", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3874", "id": "3874", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7726", "id": "7726", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10684", "id": "G10684", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851047", "id": "CID91851047", "database": "PubChem" }, { "url": 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"G00032MO", "name": "O-Glycan core 1 fuzzy" }, { "id": "G00034MO", "name": "O-Glycan core 2 fuzzy" }, { "id": "G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G92617LF": { "glytoucan_ac": "G92617LF", "mass": 1827.68, "iupac": "beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-1-3-1-4-5/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_d6-f1_g2-h1_h4-i1", "glycoct": 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"name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, 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"classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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}, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { 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"id": "SID252287309", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3595.82, "inchi_key": "GNUISBQLNMVQPK-MQBXMYRZSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@H]([C@@H](CO)O)[C@@H]([C@H](CO)NC(=O)C)O)CO)O)O[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": 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"number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+2777", "id": "2777", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=7898", "id": "7898", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12419", "id": "12419", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845829", "id": "CID91845829", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276788", "id": "SID252276788", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1583.84, "inchi_key": "CGWQXUMQPWSMMJ-RLJPRPIZSA-N", "publication": [], "smiles_isomeric": 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"gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG419", "id": "GOG419", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13870", "id": "13870", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2093", "id": "2093", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24816", "id": "24816", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848436", "id": "CID91848436", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279929", "id": "SID252279929", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4652.33, "inchi_key": "UAGNVLUWCAEINT-RCKRTYIXSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1993", "id": "1993", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2716", "id": "2716", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/7082", "id": "7082", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2496.27, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": 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"database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13846", "id": "13846", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1020", "id": "1020", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24788", "id": "24788", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861487", "id": "CID91861487", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295502", "id": "SID252295502", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1559", "id": "1559", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3463.75, "inchi_key": "HSRSYBCXPBQJMT-NCQDDLKQSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1559", "id": "1559", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin 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"P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG412", "id": "GOG412", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13861", "id": "13861", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1439", "id": "1439", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24805", "id": "24805", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845352", "id": "CID91845352", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276229", "id": "SID252276229", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 3841.93, "inchi_key": "MZJXBBXURKECMH-HGQOWBQTSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1985", "id": "1985", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"uniprot_canonical_ac": "P31422-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P31422/annotated", "id": "P31422", "database": "UniCarbKB" } ], "protein_name": "Metabotropic glutamate receptor 3", "gene_name": "", "position": 414 }, { "uniprot_canonical_ac": "P97546-2", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P97546/annotated", "id": "P97546", "database": "UniCarbKB" } ], "protein_name": "Neuroplastin", "gene_name": "", "position": 196 }, { "uniprot_canonical_ac": "O70352-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/O70352/annotated", "id": "O70352", "database": "UniCarbKB" } ], "protein_name": "CD82 antigen", "gene_name": "", "position": 157 }, { "uniprot_canonical_ac": "Q62867-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q62867/annotated", "id": "Q62867", "database": "UniCarbKB" } ], "protein_name": "Gamma-glutamyl hydrolase", "gene_name": "", "position": 100 }, { "uniprot_canonical_ac": "Q63198-1", "evidence": 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"Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7666", "id": "7666", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" }, { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7666", "id": "7666", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7666", "id": "7666", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "O-linked glycosylation of rat renal gamma-glutamyltranspeptidase adjacent to its membrane anchor domain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2573604", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7666", "id": "7666", "database": "UniCarbKB" } ], "authors": "Blochberger TC, Sabatine JM, Lee YC, Hughey RP", "date": "1989", "pmid": "2573604" } ], "smiles_isomeric": 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human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7688", "id": "7688", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7688", "id": "7688", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7688", "id": "7688", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G61169KO": { "glytoucan_ac": "G61169KO", "mass": 2313.84, "iupac": 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"Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", 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"attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } 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"UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1999", "id": "1999", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25359", "id": "25359", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845770", "id": "CID91845770", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276722", "id": "SID252276722", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3769.91, "inchi_key": "DOQQDGCJJCOORV-INWKHUJSSA-N", "publication": [], "smiles_isomeric": 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{ "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" 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Isolation and characterization of trifucosyl-Leb antigen (III4V4VI2Fuc3Lc6).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1735443", "journal": "European journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G74578MX", "id": "G74578MX", "database": "GlyTouCan" } ], "authors": "Stroud MR, Levery SB, Salyan ME, Roberts CE, Hakomori S", "date": "1992", "pmid": "1735443" }, { "title": "Specificity and immunobiological properties of monoclonal antibody IMH2, established after immunization with Le(b)/Le(a) glycosphingolipid, a novel extended type 1 chain antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1377598", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G74578MX", "id": "G74578MX", "database": "GlyTouCan" } ], "authors": "Ito H, Tashiro K, Stroud MR, Orntoft TF, Meldgaard P, Singhal AK, Hakomori S", "date": "1992", "pmid": "1377598" } ], "smiles_isomeric": 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"name": "Blood group H" } ], "inchi": "" }, "G35708JV": { "glytoucan_ac": "G35708JV", "mass": 2881.03, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i6-j2_k2-l1_l4-m1_m3-n2", "glycoct": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbSynthe_0805_D000", "id": "carbSynthe_0805_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbSynthe_0844_D000", "id": "carbSynthe_0844_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbSynthe_0845_D000", "id": "carbSynthe_0845_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=32749", "id": "32749", "database": "GlycomeDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID70678913", "id": "CID70678913", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276706", "id": "SID252276706", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1292.67, "inchi_key": "", "publication": [ { "title": "Human tumor-associated Le(a)-Le(x) hybrid carbohydrate antigen IV3(Gal beta 1-->3[Fuc alpha 1-->4]GlcNAc)III3FucnLc4 defined by monoclonal antibody 43-9F: enzymatic synthesis, structural characterization, and comparative reactivity with various antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7521211", "journal": "Biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G07357YR", "id": "G07357YR", "database": "GlyTouCan" } ], "authors": "Stroud MR, Levery SB, Martensson S, Salyan ME, Clausen H, Hakomori S", "date": "1994", "pmid": "7521211" }, { "title": "Extended type 1 chain glycosphingolipids: dimeric Lea (III4V4Fuc2Lc6) as human tumor-associated antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2022659", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G07357YR", "id": "G07357YR", "database": "GlyTouCan" } ], "authors": "Stroud MR, Levery SB, Nudelman ED, Salyan ME, Towell JA, Roberts CE, Watanabe M, Hakomori S", "date": "1991", "pmid": "2022659" }, { "title": "In vitro and in vivo antitumor effects of murine monoclonal antibody NCC-ST-421 reacting with dimeric Le(a) (Le(a)/Le(a)) epitope.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1706961", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G07357YR", "id": "G07357YR", "database": "GlyTouCan" } ], "authors": "Watanabe M, Ohishi T, Kuzuoka M, Nudelman ED, Stroud MR, Kubota T, Kodairo S, Abe O, Hirohashi S, Shimosato Y, et al.", "date": "1991", "pmid": "1706961" }, { "title": "A carbohydrate epitope associated with human squamous lung cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2450645", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G07357YR", "id": "G07357YR", "database": "GlyTouCan" } ], "authors": "Martensson S, Due C, Pahlsson P, Nilsson B, Eriksson H, Zopf D, Olsson L, Lundblad A", "date": "1988", "pmid": "2450645" }, { "title": "Tumorigenic human squamous lung cancer cells have defined cell surface carbohydrates that are absent from nontumorigenic cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3422461", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G07357YR", "id": "G07357YR", "database": "GlyTouCan" } ], "authors": "Pettijohn DE, Pfenninger O, Brown J, Duke R, Olsson L", "date": "1988", "pmid": "3422461" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H](O[C@H]([C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)NC(=O)C)O[C@H]4[C@H]([C@H](O[C@H]([C@@H]4O)O[C@@H]5[C@H](O[C@H]([C@@H]([C@H]5O[C@H]6[C@H]([C@@H]([C@@H]([C@@H](O6)C)O)O)O)NC(=O)C)O)CO)CO)O)CO)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-3[LFucpa1-4]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G94019IV": { "glytoucan_ac": "G94019IV", "mass": 2659.94, "iupac": "alpha-D-NeupAc-(2->3)[alpha-D-NeupAc-(2->6)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": 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], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structural characterisation of N-linked and O-linked oligosaccharides derived from interferon-alpha2b and interferon-alpha14c produced by Sendai-virus-induced human peripheral blood leukocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9654101", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Nyman TA, Kalkkinen N, Tolo H, Helin J", "date": "1998", "pmid": "9654101" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "An improved approach to the analysis of the structure of small oligosaccharides of glycoproteins: application to the O-linked oligosaccharides from human glycophorin A.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8384526", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Krotkiewski H, Lisowska E, Nilsson G, Gronberg G, Nilsson B", "date": "1993", "pmid": "8384526" }, { "title": "Altered O-glycan synthesis in lymphocytes from patients with Wiskott-Aldrich syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2033371", "journal": "The Journal of experimental medicine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Piller F, Le Deist F, Weinberg KI, Parkman R, Fukuda M", "date": "1991", "pmid": "2033371" }, { "title": "Natural human interferon-alpha 2 is O-glycosylated.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2049076", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Adolf GR, Kalsner I, Ahorn H, Maurer-Fogy I, Cantell K", "date": "1991", "pmid": "2049076" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": 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"1988", "pmid": "2971663" }, { "title": "Membrane glycophorins in Sta blood group erythrocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3514617", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Blumenfeld OO, Adamany AM, Kikuchi M, Sabo B, McCreary J", "date": "1986", "pmid": "3514617" }, { "title": "Structural variations of O-linked oligosaccharides present in leukosialin isolated from erythroid, myeloid, and T-lymphoid cell lines.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2943741", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Carlsson SR, Sasaki H, Fukuda M", "date": "1986", "pmid": "2943741" }, { "title": "Comparative study of glycophorin A derived O-glycans from human Cad, Sd(a+) and Sd(a-) erythrocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/4091823", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Blanchard D, Capon C, Leroy Y, Cartron JP, Fournet B", "date": "1985", "pmid": "4091823" }, { "title": "The structure of the carbohydrate units of human plasma galactoglycoprotein determined by 500-megahertz 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6725284", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/8", "id": "8", "database": "UniCarbKB" } ], "authors": "Akiyama K, Simons ER, Bernasconi P, Schmid K, van Halbeek H, Vliegenthart JF, Haupt H, Schwick HG", "date": "1984", "pmid": "6725284" }, { "title": "Study of the carbohydrate moiety of human serum sex hormone-binding globulin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6684483", "journal": "Biochimica et biophysica acta", "evidence": [ { "url": 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glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1066", "id": "1066", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1066", "id": "1066", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Carbohydrate structures of a 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"https://www.genome.jp/dbget-bin/www_bget?gl:G10919", "id": "G10919", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845857", "id": "CID91845857", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276821", "id": "SID252276821", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1987.02, "inchi_key": "HYJQZQXGTWVANM-JZSUNJDOSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O[C@H]3[C@H]([C@@H]([C@@H]([C@@H](O3)C)O)O)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O[C@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@@H]6[C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" 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"name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": 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"Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P38649-1", "gene": "Abo", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": 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{ "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846190", "id": "CID91846190", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277212", "id": "SID252277212", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2237.17, "inchi_key": "PJFWNDDDMRCJDR-COMOUKMBSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O[C@@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N50", "parentid": "N6", "name": "N-glycan_a-D-Galp_50" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,15,14/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-o1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1_m3-n2", "glycoct": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": 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"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O54905-1", 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}, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859006", "id": "CID91859006", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292527", "id": "SID252292527", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1275", "id": "1275", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3940.97, "inchi_key": "CGOLBYJQBXMXHI-NHXCNIETSA-N", "publication": [], "smiles_isomeric": 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"DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-4[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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"http://www.unicarbkb.org/structure/4791", "id": "4791", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G05850WN": { "glytoucan_ac": "G05850WN", "mass": 2280.82, "iupac": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+42785", "id": "42785", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4991", "id": "4991", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5374", "id": "5374", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7694", "id": "7694", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2741.4, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=14038", "id": "14038", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3191", "id": "3191", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25405", "id": "25405", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851854", "id": "CID91851854", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283964", "id": "SID252283964", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/7000", "id": "7000", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 1964.99, "inchi_key": "UGVKLQAJZWYIBL-XJSVOYEISA-N", "publication": [], "smiles_isomeric": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15739", "id": "15739", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853663", "id": "CID91853663", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286110", "id": "SID252286110", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3769.91, "inchi_key": "CTVYZMSYNZZLMU-YIXNCKLBSA-N", "publication": [], "smiles_isomeric": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": 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"protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 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biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3133", "id": "3133", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3133", "id": "3133", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" } ], "smiles_isomeric": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": 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"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG576", "id": "GOG576", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14713", "id": "14713", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/996", "id": "996", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26252", "id": "26252", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848786", "id": "CID91848786", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252280348", "id": "SID252280348", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/5344", "id": "5344", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 156 } ], "mass_pme": 2844.45, "inchi_key": "WNIDSGFUIPCYHH-PEFSDKBCSA-N", "publication": [ { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5344", "id": "5344", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "Structural determination of two N-linked glycans isolated from recombinant human lactoferrin expressed in BHK cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7774715", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5344", "id": "5344", "database": "UniCarbKB" } ], "authors": "Legrand D, Salmon V, Coddeville B, Benaissa M, Plancke Y, Spik G", "date": "1995", "pmid": "7774715" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. Absence of fucose residues questions the proposed mechanism of hyposideraemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2390069", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5344", "id": "5344", "database": "UniCarbKB" } ], "authors": "Derisbourg P, Wieruszeski JM, Montreuil J, Spik G", "date": "1990", "pmid": "2390069" }, { "title": "Structural study of the sugar chains of human lactoferrin: finding of four novel complex-type asparagine-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7068558", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5344", "id": "5344", "database": "UniCarbKB" } ], "authors": "Matsumoto A, Yoshima H, Takasaki S, Kobata A", "date": "1982", "pmid": "7068558" } ], "smiles_isomeric": 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"detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N99", "parentid": "N59", "name": "N-glycan_a-L-Fucp_99" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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"InChI=1S/C87H144N6O65/c1-20(106)88-40-51(120)64(31(12-99)137-75(40)133)148-76-41(89-21(2)107)52(121)67(34(15-102)142-76)152-82-62(131)71(50(119)37(147-82)19-136-84-73(58(127)48(117)29(10-97)141-84)155-78-43(91-23(4)109)54(123)65(32(13-100)144-78)150-80-59(128)56(125)46(115)27(8-95)138-80)154-85-74(156-79-44(92-24(5)110)55(124)66(33(14-101)145-79)151-81-60(129)57(126)47(116)28(9-96)139-81)61(130)69(36(17-104)146-85)149-77-42(90-22(3)108)53(122)68(35(16-103)143-77)153-83-63(132)72(49(118)30(11-98)140-83)158-87(86(134)135)6-25(111)39(93-38(113)18-105)70(157-87)45(114)26(112)7-94/h25-37,39-85,94-105,111-112,114-133H,6-19H2,1-5H3,(H,88,106)(H,89,107)(H,90,108)(H,91,109)(H,92,110)(H,93,113)(H,134,135)/t25-,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48+,49-,50+,51+,52+,53+,54+,55+,56-,57-,58-,59+,60+,61-,62-,63+,64+,65+,66+,67+,68+,69+,70+,71-,72-,73-,74-,75+,76-,77-,78-,79-,80-,81-,82-,83-,84-,85+,87-/m0/s1" }, "G84301XG": { "glytoucan_ac": 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"id": "G84301XG", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": 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"id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7458", "id": "7458", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7458", "id": "7458", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P29965-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P29965/annotated", "id": "P29965", "database": "UniCarbKB" } ], "protein_name": "CD40 ligand", "gene_name": "CD40LG", "position": 240 } ], "mass_pme": 2781.39, "inchi_key": "", "publication": [ { "title": "Determination of carbohydrate structures N-linked to soluble CD154 and characterization 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"iupac": "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/4,7,6/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-2/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:a-lgal-HEX-1:5|6:d\\n6b:b-dgal-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(3+1)5d\\n5:3o(4+1)6d\\n6:6o(3+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G30648VY", "id": "G30648VY", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1301", "id": "1301", 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"title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4805", "id": "4805", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4805", "id": "4805", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked 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}, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8552", "id": "8552", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9265", "id": "9265", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9888", "id": "9888", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1751", "id": "1751", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2188", "id": "2188", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 914.48, "inchi_key": "", "publication": [ { "title": "Relevance of fucosylation and Lewis antigen expression in the bacterial gastroduodenal pathogen Helicobacter pylori.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/18279843", "journal": "Carbohydrate research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G51828AY", "id": "G51828AY", "database": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+6087", "id": "6087", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7493", "id": "7493", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=558", "id": "558", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=701", "id": "701", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 856.44, "inchi_key": "", "publication": [ { "title": "Carboxyl terminus of Helicobacter pylori alpha1,3-fucosyltransferase determines the structure and stability.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16800635", "journal": "Biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G42049JU", "id": "G42049JU", "database": "GlyTouCan" } ], "authors": "Lin SW, Yuan TM, Li JR, Lin CH", "date": "2006", "pmid": "16800635" }, { "title": "Cloning and heterologous expression of an alpha1,3-fucosyltransferase gene from the gastric pathogen Helicobacter pylori.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9261149", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G42049JU", "id": "G42049JU", "database": "GlyTouCan" } ], "authors": "Ge Z, Chan NW, Palcic MM, Taylor DE", "date": "1997", "pmid": "9261149" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [], "inchi": "" }, "G74120DW": { "glytoucan_ac": "G74120DW", "mass": 2151.78, "iupac": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+25701", "id": "25701", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28611", "id": "28611", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1487", "id": "1487", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1801", "id": "1801", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2793.44, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { 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"Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": 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urine cerebroside sulfate activator protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11180632", "journal": "Journal of mass spectrometry : JMS", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3127", "id": "3127", "database": "UniCarbKB" } ], "authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3127", "id": "3127", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 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"https://glytoucan.org/Structures/Glycans/G79540ZR", "id": "G79540ZR", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+18994", "id": "18994", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+33670", "id": "33670", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3933", "id": "3933", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=3811", "id": "3811", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=5201", "id": "5201", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 4145.07, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G58232MG": { "glytoucan_ac": "G58232MG", "mass": 2733.97, "iupac": "?-L-Fucp-(1->?),?-D-NeupAc-(2->?),?-D-NeupAc-(2->?),?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3/6)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O][a1221m-1x_1-5]/1-1-2-3-4-5-4-5-3-4-5-6-6-7/a4-b1_b4-c1_d1-c3|c6_i1-c3|c6_d?-e1_d?-g1_e?-f1_g?-h1_i?-j1_j?-k1_l2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?}_m2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?}_n1-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:x-dglc-HEX-1:5\\n15b:x-dgal-HEX-1:5\\n16s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(3|6+1)13d\\n13:13o(-1+1)14d\\n14:14o(-1+1)15d\\n15:14d(2+1)16n\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n17b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n19b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n20s:n-acetyl\\nLIN\\n17:19d(5+1)20n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n21b:x-lgal-HEX-1:5|6:d", 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"uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" }, { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 241 } ], "mass_pme": 3392.71, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G96175KT": { "glytoucan_ac": "G96175KT", "mass": 2011.64, "iupac": "beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,10,9/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_3*OSO/3=O/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-6-7/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1_i3-j2", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_43434_D000", "id": "carbNlink_43434_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=24686", "id": "24686", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G12014", "id": "G12014", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848482", "id": "CID91848482", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279984", "id": "SID252279984", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2474.16, "inchi_key": "QVDWBDQRRHDADU-CHCLVJIHSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](OC([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)OS(=O)(=O)O)O)O)NC(=O)C)O)CO)O)O)CO)CO)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C73H121N5O57S/c1-17(88)74-33-22(93)6-73(72(111)112,133-57(33)38(95)23(94)7-79)134-59-41(98)26(10-82)118-68(51(59)108)128-55-30(14-86)123-65(36(46(55)103)77-20(4)91)131-61-48(105)39(96)24(8-80)120-70(61)116-16-32-43(100)58(50(107)67(125-32)127-54-29(13-85)122-64(35(45(54)102)76-19(3)90)126-53-28(12-84)117-63(110)34(44(53)101)75-18(2)89)130-71-62(49(106)40(97)25(9-81)121-71)132-66-37(78-21(5)92)47(104)56(31(15-87)124-66)129-69-52(109)60(135-136(113,114)115)42(99)27(11-83)119-69/h22-71,79-87,93-110H,6-16H2,1-5H3,(H,74,88)(H,75,89)(H,76,90)(H,77,91)(H,78,92)(H,111,112)(H,113,114,115)/t22-,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41-,42-,43+,44+,45+,46+,47+,48-,49-,50-,51+,52+,53+,54+,55+,56+,57+,58-,59-,60-,61-,62-,63?,64-,65-,66-,67-,68-,69-,70-,71+,73-/m0/s1" }, "G66655HQ": { "glytoucan_ac": "G66655HQ", "mass": 2071.78, "iupac": "beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,11,10/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-2-5-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-i1_i4-j1", "glycoct": 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"id": "G00120", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846734", "id": "CID91846734", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277873", "id": "SID252277873", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1986.99, "inchi_key": "FHYHEPCLJMPNGB-LIVNVQCASA-N", "publication": [ { "title": "The specificity of monoclonal antibody A2B5 to c-series gangliosides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11432974", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G78818SP", "id": "G78818SP", "database": "GlyTouCan" } ], "authors": "Saito M, Kitamura H, Sugiyama K", "date": "2001", "pmid": "11432974" }, { "title": "A distinct ganglioside composition of rat pancreatic islets.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10775425", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": 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vertebrates, reacting with the monoclonal antibody Q211.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1695858", "journal": "Brain research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G78818SP", "id": "G78818SP", "database": "GlyTouCan" } ], "authors": "Greis C, Rosner H", "date": "1990", "pmid": "1695858" }, { "title": "Developmental changes of C-series polysialogangliosides in chick brains revealed by mouse monoclonal antibodies M6704 and M7103 with different epitope specificities.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2468656", "journal": "Journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G78818SP", "id": "G78818SP", "database": "GlyTouCan" } ], "authors": "Hirabayashi Y, Hirota M, Matsumoto M, Tanaka H, Obata K, Ando S", "date": "1988", "pmid": "2468656" }, { "title": "Developmental expression in embryonic rat and chicken brain of a polysialoganglioside-antigen reacting with the monoclonal antibody Q 211.", 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"Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": 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"id": "GOG10", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=217", "id": "217", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/253", "id": "253", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22984", "id": "22984", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=270", "id": "270", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G01403", "id": "G01403", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91849639", "id": "CID91849639", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252281337", "id": "SID252281337", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "glycoprotein": 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"evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 102 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07359-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07359/annotated", "id": "P07359", "database": "UniCarbKB" } ], "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "position": 37 }, { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 }, { "uniprot_canonical_ac": "P07359-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07359/annotated", "id": "P07359", "database": "UniCarbKB" } ], "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "position": 175 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2943.48, "inchi_key": "PBAQHKBWZGAMCL-UOMXRHTCSA-N", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" }, { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "The carbohydrate moiety of human platelet glycocalicin: the structures of the major Asn-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3571205", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Tsuji T, Osawa T", "date": "1987", "pmid": "3571205" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1527", "id": "1527", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": 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"rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside 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"parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N82", "parentid": "N8", "name": "N-glycan_b-D-GalpNAc_82" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-4[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4094.96, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5169", "id": "5169", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": 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"id": "517", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02724-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02724/annotated", "id": "P02724", "database": "UniCarbKB" } ], "protein_name": "Glycophorin-A", "gene_name": "GYPA", "position": 38 }, { "uniprot_canonical_ac": "P02724-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02724/annotated", "id": "P02724", "database": "UniCarbKB" } ], "protein_name": "Glycophorin-A", "gene_name": "GYPA", "position": 69 }, { "uniprot_canonical_ac": "P02724-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02724/annotated", "id": "P02724", "database": "UniCarbKB" } ], "protein_name": "Glycophorin-A", "gene_name": "GYPA", "position": 29 }, { "uniprot_canonical_ac": "P02724-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02724/annotated", "id": "P02724", "database": "UniCarbKB" } ], "protein_name": "Glycophorin-A", "gene_name": "GYPA", "position": 31 }, { 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"Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7526", "id": "7526", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2912", "id": "2912", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1695", "id": "1695", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23728", "id": "23728", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3867", "id": "3867", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10807", "id": "G10807", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853849", "id": "CID91853849", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286335", "id": "SID252286335", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/4209", "id": "4209", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07602-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07602/annotated", "id": "P07602", "database": "UniCarbKB" } ], "protein_name": "Prosaposin", "gene_name": "PSAP", "position": 332 }, { "uniprot_canonical_ac": "P07602-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07602/annotated", "id": "P07602", "database": "UniCarbKB" } ], "protein_name": "Prosaposin", "gene_name": "PSAP", "position": 215 } ], "mass_pme": 1393.72, "inchi_key": "UCGVLPNQLILGOC-HTJVEHMCSA-N", "publication": [ { "title": "Structure of the asparagine-linked sugar chains of porcine kidney and human urine cerebroside sulfate activator protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11180632", "journal": "Journal of mass spectrometry : JMS", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4209", "id": "4209", "database": "UniCarbKB" } ], "authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4209", "id": "4209", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4209", "id": "4209", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O)O)O[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)NC(=O)C)O)O)O)O)NC(=O)C)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpNAcb1-4DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "InChI=1S/C42H71N3O31/c1-10(51)43-19-26(58)33(15(6-48)67-37(19)65)73-39-21(45-12(3)53)27(59)34(16(7-49)70-39)75-42-32(64)36(24(56)18(72-42)9-66-40-30(62)28(60)23(55)14(5-47)69-40)76-41-31(63)29(61)35(17(8-50)71-41)74-38-20(44-11(2)52)25(57)22(54)13(4-46)68-38/h13-42,46-50,54-65H,4-9H2,1-3H3,(H,43,51)(H,44,52)(H,45,53)/t13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23-,24-,25-,26-,27-,28+,29-,30+,31+,32+,33-,34-,35-,36+,37-,38+,39+,40+,41-,42+/m1/s1" }, "G83161QT": { "glytoucan_ac": "G83161QT", "mass": 1558.54, "iupac": "alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/3,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-f1_d2-e1_f3-g1_f6-h1_h2-i1", "glycoct": 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"database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00028MO", "name": "N-Glycan high mannose" } ], "inchi": "" }, "G22689CV": { "glytoucan_ac": "G22689CV", "mass": 1161.42, "iupac": "alpha-D-Galp-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-Glcp(1->", "wurcs": 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}, "G72919IM": { "glytoucan_ac": "G72919IM", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h4-l1_i4-j1_j3-k2_l4-m1_m3-n2", "glycoct": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13858", "id": "13858", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2753", "id": "2753", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24800", "id": "24800", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861756", "id": "CID91861756", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295811", "id": "SID252295811", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1557", "id": "1557", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": 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"gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q8K2A8-1", "gene": "Alg3", "gene_link": "", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7849", "id": "7849", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P10253-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P10253/annotated", "id": "P10253", "database": "UniCarbKB" } ], "protein_name": "Lysosomal alpha-glucosidase", "gene_name": "GAA", "position": 140 } ], "mass_pme": 2910.4, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N19", "parentid": "N4", "name": "N-glycan_a-D-Manp_19" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N20", "parentid": "N4", "name": "N-glycan_a-D-Manp_20" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N23", "parentid": "N20", "name": "N-glycan_a-D-Manp_23" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE145", "parentid": "N20", "name": "N-glycan_a-D-GlcNAcp_E145" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00029MO", "name": "N-Glycan hybrid" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G13991MC": { "glytoucan_ac": "G13991MC", "mass": 2588.94, "iupac": "alpha-D-NeupAc-(2->6),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3/6)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,14,13/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-2-6-5-4-2-5-6-7/a4-b1_a6-m1_b4-c1_d2-e1_d4-g1_e4-f1_g3-h1_g4-i1_j2-k1_k4-l1_d1-c3|c6_j1-c3|c6_n1-f6|i6|l6}", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:a-lgal-HEX-1:5|6:d\\n13b:b-dgal-HEX-1:5\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(3+1)12d\\n12:10o(4+1)13d\\n13:5o(3|6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(4+1)17d\\n17:1o(6+1)18d\\nUND\\nUND1:100.0:100.0\\nParentIDs:9|13|17\\nSubtreeLinkageID1:o(6+1)d\\nRES\\n19b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n20s:n-acetyl\\nLIN\\n18:19d(5+1)20n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G13991MC", "id": "G13991MC", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21464_P", "id": "carbNlink_21464_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=36104", "id": "36104", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 3205.62, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G22784CD": { "glytoucan_ac": "G22784CD", "mass": 1655.59, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/5,9,8/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-5-3-5-2/a4-b1_b3-c1_b6-g1_c3-d1_c4-f1_d3-e2_g3-h1_g4-i1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dgal-HEX-1:5\\n6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n7s:n-acetyl\\n8b:a-lgal-HEX-1:5|6:d\\n9b:b-dglc-HEX-1:5\\n10s:n-acetyl\\n11b:a-lgal-HEX-1:5|6:d\\n12b:b-dgal-HEX-1:5\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(3+1)5d\\n5:5o(3+2)6d\\n6:6d(5+1)7n\\n7:3o(4+1)8d\\n8:2o(6+1)9d\\n9:9d(2+1)10n\\n10:9o(3+1)11d\\n11:9o(4+1)12d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G22784CD", "id": "G22784CD", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5206", "id": "5206", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=3090", "id": "3090", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4124", "id": "4124", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2062.05, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00053MO", "name": "Sialyl Lewis A" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00069MO", "name": "Glycosphingolipid Lacto series" } ], "inchi": "" }, "G19490DN": { "glytoucan_ac": "G19490DN", "mass": 2005.72, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->?)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-4-3-1-4/a4-b1_b4-c1_d2-e1_d6-g1_e4-f1_g4-h1_i2-j1_j4-k1_c?-d1_c?-i1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(-1+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(-1+1)10d\\n10:10o(2+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:10o(6+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2509", "id": "2509", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1957", "id": "1957", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2509", "id": "2509", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2496.27, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G03385XG": { "glytoucan_ac": "G03385XG", "mass": 2587.92, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_h3-i2_j2-k1_k4-l1_l6-m2", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": 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"id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+20937", "id": "20937", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35896", "id": "35896", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=14278", "id": "14278", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1945.01, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+8491", "id": "8491", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8875", "id": "8875", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8900", "id": "8900", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9087", "id": "9087", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=172", "id": "172", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=223", "id": "223", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 815.42, "inchi_key": "", "publication": [ { "title": "Inhibition of Helicobacter pylori binding to gastrointestinal epithelial cells by sialic acid-containing oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9009338", "journal": "Infection and immunity", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G40764VP", "id": "G40764VP", "database": "GlyTouCan" } ], "authors": "Simon PM, Goode PL, Mobasseri A, Zopf D", "date": "1997", "pmid": "9009338" }, { "title": "Ganglioside epitope recognized by K99 fimbriae from enterotoxigenic Escherichia coli.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2465273", "journal": "Infection and immunity", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G40764VP", "id": "G40764VP", "database": "GlyTouCan" } ], "authors": "Ono E, Abe K, Nakazawa M, Naiki M", "date": "1989", "pmid": "2465273" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 0, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [], "inchi": "" }, "G92681HQ": { "glytoucan_ac": "G92681HQ", "mass": 3324.1, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,16,15/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_3*OSO/3=O/3=O]/1-1-2-3-1-4-5-1-6-3-1-4-5-1-4-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_j2-k1_j6-n1_k4-l1_l3-m2_n4-o1_o3-p2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15s:sulfate\\n16b:a-dman-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\n20b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n21s:n-acetyl\\n22b:b-dglc-HEX-1:5\\n23s:n-acetyl\\n24b:b-dgal-HEX-1:5\\n25b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n26s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+1)15n\\n15:5o(6+1)16d\\n16:16o(2+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d\\n19:19o(3+2)20d\\n20:20d(5+1)21n\\n21:16o(6+1)22d\\n22:22d(2+1)23n\\n23:22o(4+1)24d\\n24:24o(3+2)25d\\n25:25d(5+1)26n", "species": [ { "evidence": [ { "url": 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"http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4094.96, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5167", "id": "5167", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": 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"rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpa1-3DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"1997", "pmid": "9449027" }, { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" }, { "title": "Alteration of asparagine-linked glycosylation in serum transferrin of patients with hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8174273", "journal": "Clinica chimica acta; international journal of clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Matsumoto K, Maeda Y, Kato S, Yuki H", "date": "1994", "pmid": "8174273" }, { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous glycostructure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8202534", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Pepys MB, Rademacher TW, Amatayakul-Chantler S, Williams P, Noble GE, Hutchinson WL, Hawkins PN, Nelson SR, Gallimore JR, Herbert J, et al.", "date": "1994", "pmid": "8202534" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "Carbohydrate deficient glycoprotein syndrome type II: a deficiency in Golgi localised N-acetyl-glucosaminyltransferase II.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7944531", "journal": "Archives of disease in childhood", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Jaeken J, Schachter H, Carchon H, De Cock P, Coddeville B, Spik G", "date": "1994", "pmid": "7944531" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Variation of the glycosylation of human pancreatic bile-salt-dependent lipase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8404899", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Mas E, Abouakil N, Roudani S, Franc JL, Montreuil J, Lombardo D", "date": "1993", "pmid": "8404899" }, { "title": "Structural analysis on the sugar chains of human alpha 1-antitrypsin: presence of fucosylated biantennary glycan in hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8390218", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Saitoh A, Aoyagi Y, Asakura H", "date": "1993", "pmid": "8390218" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "N-glycosylation site mapping of human serotransferrin by serial lectin affinity chromatography, fast atom bombardment-mass spectrometry, and 1H nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1456441", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Fu D, van Halbeek H", "date": "1992", "pmid": "1456441" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": 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Temporal dependence of the nature of the oligosaccharides assembled on asparagine-289 of recombinant human plasminogen produced in baculovirus vector infected Spodoptera frugiperda (IPLB-SF-21AE) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2059624", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2059624" }, { "title": "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2065054", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2065054" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Oligosaccharide processing in the expression of human plasminogen cDNA by lepidopteran insect (Spodoptera frugiperda) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2386787", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1521", "id": "1521", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Fraser MJ, Castellino FJ", "date": "1990", "pmid": "2386787" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=14360", "id": "14360", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22976", "id": "22976", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00205", "id": "G00205", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861784", "id": "CID91861784", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295846", "id": "SID252295846", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1241", "id": "1241", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 }, { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 296 }, { "uniprot_canonical_ac": "P02743-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02743/annotated", "id": "P02743", "database": "UniCarbKB" } ], "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "position": 51 }, { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 325 } ], "mass_pme": 2408.22, "inchi_key": "DBTRHOFNWDJOBD-JKJNHGMESA-N", "publication": [ { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous glycostructure.", "url": 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cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1241", "id": "1241", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1241", "id": "1241", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Protein and carbohydrate structural analysis of a recombinant soluble CD4 receptor by mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2592374", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1241", "id": "1241", "database": "UniCarbKB" } ], "authors": "Carr SA, Hemling ME, Folena-Wasserman G, Sweet RW, Anumula K, Barr JR, Huddleston MJ, Taylor P", "date": "1989", "pmid": "2592374" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1241", "id": "1241", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" } ], "smiles_isomeric": 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"RES\\n1b:o-dgal-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dgal-HEX-1:5\\n4b:b-dglc-HEX-1:5\\n5b:b-dgal-HEX-1:5\\n6b:a-lgal-HEX-1:5|6:d\\n7b:a-dgal-HEX-1:5\\n8s:n-acetyl\\n9s:n-acetyl\\n10b:b-dglc-HEX-1:5\\n11b:b-dgal-HEX-1:5\\n12b:a-lgal-HEX-1:5|6:d\\n13s:n-acetyl\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:3o(3|6+1)4d\\n4:4o(3|4+1)5d\\n5:5o(2+1)6d\\n6:5o(3+1)7d\\n7:7d(2+1)8n\\n8:4d(2+1)9n\\n9:3o(3|6+1)10d\\n10:10o(3|4+1)11d\\n11:11o(2+1)12d\\n12:10d(2+1)13n\\n13:1o(6+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G39305NP", "id": "G39305NP", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12054", "id": "12054", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35946", "id": "35946", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16484", "id": "16484", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2452.28, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00066MO", "name": "Blood group A" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G26014MK": { "glytoucan_ac": "G26014MK", "mass": 2775.0, "iupac": "?-D-GlcpNAc-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?),alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-1-3-4-5-6-7-5-6-7-5/a4-b1_a6-g1_b4-c1_c3-d1_c4-e1_c6-f1_h?-i1_i?-j2_k?-l1_l?-m2_h1-a?|b?|c?|d?|e?|f?|g?}_k1-a?|b?|c?|d?|e?|f?|g?}_n1-a?|b?|c?|d?|e?|f?|g?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(4+1)7d\\n7:7d(2+1)8n\\n8:5o(6+1)9d\\n9:1o(6+1)10d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n11b:x-dglc-HEX-1:5\\n12b:x-dgal-HEX-1:5\\n13b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n14s:n-acetyl\\n15s:n-acetyl\\nLIN\\n10:11o(-1+1)12d\\n11:12o(-1+2)13d\\n12:13d(5+1)14n\\n13:11d(2+1)15n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n16b:x-dglc-HEX-1:5\\n17b:x-dgal-HEX-1:5\\n18b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n19s:n-acetyl\\n20s:n-acetyl\\nLIN\\n14:16o(-1+1)17d\\n15:17o(-1+2)18d\\n16:18d(5+1)19n\\n17:16d(2+1)20n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n21b:x-dglc-HEX-1:5\\n22s:n-acetyl\\nLIN\\n18:21d(2+1)22n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7778", "id": "7778", "database": "UniCarbKB" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7778", "id": "7778", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 196 }, { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 180 } ], "mass_pme": 3433.74, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G22237ZE": { "glytoucan_ac": "G22237ZE", "mass": 3535.24, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,17,16/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i6-j2_k2-l1_k4-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:17o(4+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G22237ZE", "id": "G22237ZE", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44821_D000", "id": "carbNlink_44821_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=19654", "id": "19654", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G03736", "id": "G03736", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91852877", "id": "CID91852877", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285187", "id": "SID252285187", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "AEZAWIUKNYMPKL-PCOOFCTFSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@H]([C@@H]([C@@H]([C@H](O4)O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](OC([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C134H218N10O98/c1-32(159)135-63-42(169)11-131(127(202)203,236-104(63)73(177)46(173)15-145)212-31-62-77(181)89(193)91(195)120(224-62)228-98-54(23-153)217-115(68(84(98)188)140-37(6)164)210-29-60-78(182)90(194)112(234-118-71(143-40(9)167)87(191)101(57(26-156)220-118)231-123-95(199)110(80(184)51(20-150)215-123)241-133(129(206)207)13-44(171)65(137-34(3)161)106(238-133)75(179)48(175)17-147)126(225-60)233-108-82(186)61(223-121(93(108)197)229-99-55(24-154)218-116(69(85(99)189)141-38(7)165)226-97-53(22-152)213-114(201)67(83(97)187)139-36(5)163)30-211-125-113(235-119-72(144-41(10)168)88(192)102(58(27-157)221-119)232-124-96(200)111(81(185)52(21-151)216-124)242-134(130(208)209)14-45(172)66(138-35(4)162)107(239-134)76(180)49(176)18-148)92(196)103(59(28-158)222-125)227-117-70(142-39(8)166)86(190)100(56(25-155)219-117)230-122-94(198)109(79(183)50(19-149)214-122)240-132(128(204)205)12-43(170)64(136-33(2)160)105(237-132)74(178)47(174)16-146/h42-126,145-158,169-201H,11-31H2,1-10H3,(H,135,159)(H,136,160)(H,137,161)(H,138,162)(H,139,163)(H,140,164)(H,141,165)(H,142,166)(H,143,167)(H,144,168)(H,202,203)(H,204,205)(H,206,207)(H,208,209)/t42-,43-,44-,45-,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77-,78+,79-,80-,81-,82+,83+,84+,85+,86+,87+,88+,89-,90-,91+,92-,93-,94+,95+,96+,97+,98+,99+,100+,101+,102+,103+,104+,105+,106+,107+,108-,109-,110-,111-,112-,113-,114?,115+,116-,117-,118-,119-,120-,121-,122-,123-,124-,125-,126+,131+,132-,133-,134-/m0/s1" }, "G81356NS": { "glytoucan_ac": "G81356NS", "mass": 1882.64, "iupac": "alpha-D-Glcp-(1->3)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1a_1-5]/1-1-2-3-3-3-4-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e2-f1_f3-g1_h3-i1_h6-j1_j2-k1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:a-dman-HEX-1:5\\n9b:a-dglc-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:a-dman-HEX-1:5\\n12b:a-dman-HEX-1:5\\n13b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7o(2+1)8d\\n8:8o(3+1)9d\\n9:5o(6+1)10d\\n10:10o(3+1)11d\\n11:10o(6+1)12d\\n12:12o(2+1)13d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q2TAA5-1", "gene": "ALG11", "gene_link": "", "protein_name": "GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9BV10-1", "gene": "ALG12", "gene_link": "", "protein_name": "Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": 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"protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13343", "id": "13343", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/412", "id": "412", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23087", "id": "23087", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854232", "id": "CID91854232", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286794", "id": "SID252286794", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2373.19, "inchi_key": "HQZBGKSCXNQJHJ-PIOQNCCXSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@@H]6[C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)O)O[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O)O)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O[C@@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O)O)O)O)NC(=O)C)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N21", "parentid": "N1", "name": "N-glycan_a-D-Manp_21" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N22", "parentid": "N21", "name": "N-glycan_a-D-Manp_22" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N25", "parentid": "N22", "name": "N-glycan_a-D-Glcp_25" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N19", "parentid": "N4", "name": "N-glycan_a-D-Manp_19" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N20", "parentid": "N4", "name": "N-glycan_a-D-Manp_20" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N23", "parentid": "N20", "name": "N-glycan_a-D-Manp_23" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpa1-3DManpa1-2DManpa1-2DManpa1-3[DManpa1-2DManpa1-6[DManpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00028MO", "name": "N-Glycan high mannose" } ], "inchi": "InChI=1S/C70H118N2O56/c1-14(82)71-27-38(93)52(23(10-80)110-60(27)107)121-61-28(72-15(2)83)39(94)53(24(11-81)118-61)122-67-51(106)56(125-69-59(45(100)34(89)20(7-77)116-69)128-70-58(44(99)33(88)21(8-78)117-70)127-66-50(105)54(35(90)22(9-79)114-66)123-63-46(101)40(95)29(84)16(3-73)111-63)37(92)26(120-67)12-108-62-49(104)55(124-64-47(102)41(96)30(85)17(4-74)112-64)36(91)25(119-62)13-109-68-57(43(98)32(87)19(6-76)115-68)126-65-48(103)42(97)31(86)18(5-75)113-65/h16-70,73-81,84-107H,3-13H2,1-2H3,(H,71,82)(H,72,83)/t16-,17-,18-,19-,20-,21-,22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40+,41+,42+,43+,44+,45+,46-,47+,48+,49+,50+,51+,52-,53-,54+,55+,56+,57+,58+,59+,60-,61+,62+,63-,64-,65-,66-,67+,68+,69-,70-/m1/s1" }, "G83709GS": { "glytoucan_ac": "G83709GS", "mass": 2516.91, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3/6)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-6/a4-b1_a6-n1_b4-c1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1_d1-c3|c6_i1-c3|c6", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7403", "id": "7403", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7413", "id": "7413", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35828", "id": "35828", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4114", "id": "4114", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3119.59, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G03250UN": { "glytoucan_ac": "G03250UN", "mass": 3683.31, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G03250UN", "id": "G03250UN", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=9773", "id": "9773", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15679", "id": "15679", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851219", "id": "CID91851219", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283213", "id": "SID252283213", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4580.31, "inchi_key": "YUKWULJFLIALRE-FFFMVOEZSA-N", "publication": [], "smiles_isomeric": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C140H230N10O102/c1-34-76(183)93(200)97(204)125(224-34)219-29-54(182)104(77(184)45(16-151)141-35(2)164)237-121-72(147-41(8)170)89(196)108(60(26-161)228-121)241-128-101(208)115(244-132-119(246-124-75(150-44(11)173)92(199)109(61(27-162)231-124)243-130-103(210)117(86(193)56(22-157)226-130)252-140(136(217)218)15-49(177)70(145-39(6)168)114(250-140)81(188)53(181)20-155)100(207)110(62(28-163)232-132)238-122-73(148-42(9)171)90(197)106(58(24-159)229-122)239-126-98(205)94(201)82(189)65(234-126)32-222-137(133(211)212)12-46(174)67(142-36(3)165)111(247-137)78(185)50(178)17-152)87(194)64(233-128)31-221-131-118(245-123-74(149-43(10)172)91(198)107(59(25-160)230-123)240-127-99(206)95(202)83(190)66(235-127)33-223-138(134(213)214)13-47(175)68(143-37(4)166)112(248-138)79(186)51(179)18-153)96(203)84(191)63(236-131)30-220-120-71(146-40(7)169)88(195)105(57(23-158)227-120)242-129-102(209)116(85(192)55(21-156)225-129)251-139(135(215)216)14-48(176)69(144-38(5)167)113(249-139)80(187)52(180)19-154/h34,45-132,151-163,174-210H,12-33H2,1-11H3,(H,141,164)(H,142,165)(H,143,166)(H,144,167)(H,145,168)(H,146,169)(H,147,170)(H,148,171)(H,149,172)(H,150,173)(H,211,212)(H,213,214)(H,215,216)(H,217,218)/t34-,45-,46-,47-,48-,49-,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79+,80+,81+,82-,83-,84+,85-,86-,87+,88+,89+,90+,91+,92+,93+,94-,95-,96-,97-,98+,99+,100-,101-,102+,103+,104+,105+,106+,107+,108+,109+,110+,111+,112+,113+,114+,115-,116-,117-,118-,119-,120+,121-,122-,123-,124-,125+,126-,127-,128-,129-,130-,131-,132+,137+,138+,139-,140-/m0/s1" 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(2+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:1o(6+1)14d\\nUND\\nUND1:100.0:100.0\\nParentIDs:7|11\\nSubtreeLinkageID1:o(3+1)d\\nRES\\n15b:a-lgal-HEX-1:5|6:d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G56809XB", "id": "G56809XB", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21433_P", "id": "carbNlink_21433_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28980", "id": "28980", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2395.22, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G57430QU": { "glytoucan_ac": "G57430QU", "mass": 1097.41, "iupac": "beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,6,5/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-5/a4-b1_a6-f1_b4-c1_c6-d1_d2-e1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(6+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:1o(6+1)9d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57430QU", "id": "G57430QU", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27509", "id": "27509", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8820", "id": "8820", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=13717", "id": "13717", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1363.71, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [], "inchi": "" }, "G47253OG": { "glytoucan_ac": "G47253OG", "mass": 2514.9, "iupac": "?-D-NeupAc-(2->?)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[?-D-NeupAc-(2->?)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-5-6-4/a4-b1_a6-m1_b4-c1_c3-d1_c6-i1_d2-e1_e3-f1_e4-g1_i2-j1_j4-k1_g?-h2_k?-l2", "glycoct": 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"count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G07842DQ": { "glytoucan_ac": "G07842DQ", "mass": 3535.24, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24622", "id": "24622", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861298", "id": "CID91861298", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295270", "id": "SID252295270", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1745", "id": "1745", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4203.11, "inchi_key": "BRRHNHIBVSGHQW-KPYQADQFSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1745", "id": "1745", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1745", "id": "1745", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1745", "id": "1745", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1745", "id": "1745", "database": "UniCarbKB" } ], "authors": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+1847", "id": "1847", "database": "CarbBank" }, { "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=72002", "id": "72002", "database": "ChEBI" }, { "url": "xxx/yyy/GOG237", "id": "GOG237", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9474", "id": "9474", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1277", "id": "1277", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15024", "id": "15024", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22979", "id": "22979", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10701", "id": "G10701", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID70788991", "id": "CID70788991", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286467", "id": "SID252286467", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01229-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01229/annotated", "id": "P01229", "database": "UniCarbKB" } ], "protein_name": "Lutropin subunit beta", "gene_name": "LHB", "position": 50 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P02743-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02743/annotated", "id": "P02743", "database": "UniCarbKB" } ], "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "position": 51 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 102 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2769.39, "inchi_key": "ZECFWZSUQLSCQU-LEBUUVDNSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous glycostructure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8202534", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Pepys MB, Rademacher TW, Amatayakul-Chantler S, Williams P, Noble GE, Hutchinson WL, Hawkins PN, Nelson SR, Gallimore JR, Herbert J, et al.", "date": "1994", "pmid": "8202534" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1247", "id": "1247", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": 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"position": 76 } ], "mass_pme": 2394.04, "inchi_key": "", "publication": [ { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7442", "id": "7442", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, 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], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 } ], "mass_pme": 2711.39, "inchi_key": "KWDZRHICKARZPO-PCWSAYCNSA-N", "publication": [ { "title": "Structural elucidation of a variety of GalNAc-containing N-linked oligosaccharides from human urinary kallidinogenase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8416919", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1151", "id": "1151", "database": "UniCarbKB" } ], "authors": "Tomiya N, Awaya J, Kurono M, Hanzawa H, Shimada I, Arata Y, Yoshida T, Takahashi N", "date": "1993", "pmid": "8416919" } ], "smiles_isomeric": 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research : CR", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Nakagoe T, Fukushima K, Sawai T, Tsuji T, Jibiki M, Nanashima A, Tanaka K, Yamaguchi H, Yasutake T, Ayabe H, Ishikawa H", "date": "2002", "pmid": "12385579" }, { "title": "Glycosylation might provide endothelial zip codes for organ-specific leukocyte traffic into inflammatory sites.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12163379", "journal": "The American journal of pathology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Renkonen J, Tynninen O, Hayry P, Paavonen T, Renkonen R", "date": "2002", "pmid": "12163379" }, { "title": "High endothelial venule-like vessels in the interstitial lesions of human glomerulonephritis.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11919403", "journal": "American journal of nephrology", "evidence": [ { 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"Immunohistopathological characterizatin of spontaneous metastases in a human lung mucoepidermoid adenocarcinoma (HLMC) xenograft.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9887355", "journal": "Pathology oncology research : POR", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Croce MV, Colussi AG, De Bravo MG, Price MR, Segal-Eiras A", "date": "1998", "pmid": "9887355" }, { "title": "L-Selectin ligands that are O-glycoprotease resistant and distinct from MECA-79 antigen are sufficient for tethering and rolling of lymphocytes on human high endothelial venules.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9456330", "journal": "The Journal of cell biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Clark RA, Fuhlbrigge RC, Springer TA", "date": "1998", "pmid": "9456330" }, { "title": "Molecular cloning and characterization of an N-acetylglucosamine-6-O-sulfotransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9712885", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Uchimura K, Muramatsu H, Kadomatsu K, Fan QW, Kurosawa N, Mitsuoka C, Kannagi R, Habuchi O, Muramatsu T", "date": "1998", "pmid": "9712885" }, { "title": "Novel monoclonal antibodies to putative selectin carbohydrate ligands that inhibit selectin binding to myeloid cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9873990", "journal": "Hybridoma", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Zhang K, Chuluyan HE, Hardie D, Shen DC, Larsen R, Issekutz A", "date": "1998", "pmid": "9873990" }, { "title": "Sulfated sialyl Lewis X, the putative L-selectin ligand, detected on endothelial cells of high endothelial venules by a distinct set of anti-sialyl Lewis X antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9015359", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Mitsuoka C, Kawakami-Kimura N, Kasugai-Sawada M, Hiraiwa N, Toda K, Ishida H, Kiso M, Hasegawa A, Kannagi R", "date": "1997", "pmid": "9015359" }, { "title": "Role of a sialyl Lewis(x)-like epitope selectively expressed on vascular endothelial cells in local skin inflammation of the rat.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9164959", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Akahori T, Yuzawa Y, Nishikawa K, Tamatani T, Kannagi R, Miyasaka M, Okada H, Hotta N, Matsuo S", "date": "1997", "pmid": "9164959" }, { "title": "Expression of leukocyte fucosyltransferases regulates binding to E-selectin: relationship to previously implicated carbohydrate epitopes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9257857", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Wagers AJ, Stoolman LM, Kannagi R, Craig R, Kansas GS", "date": "1997", "pmid": "9257857" }, { "title": "Expression of sialyl Lewis(X) in rat heart with ischaemia/reperfusion and reduction of myocardial reperfusion injury by a monoclonal antibody against sialyl Lewis(X)", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8958810", "journal": "The Journal of pathology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00672PE", "id": "G00672PE", "database": "GlyTouCan" } ], "authors": "Seko Y, Enokawa Y, Tamatani T, Kannagi R, Yagita H, Okumura K, Yazaki Y", "date": 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"database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", 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], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 2711.39, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4798", "id": "4798", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G47280HM": { "glytoucan_ac": "G47280HM", "mass": 2733.97, 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@H]([C@H](O8)CO)O)O)O)O)NC(=O)C)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C84H140N6O61/c1-19(101)85-37-50(114)64(30(12-96)131-73(37)128)143-76-40(88-22(4)104)52(116)68(34(16-100)138-76)147-82-63(127)70(149-84-72(58(122)47(111)29(11-95)136-84)151-78-42(90-24(6)106)54(118)67(33(15-99)140-78)146-81-62(126)57(121)46(110)28(10-94)135-81)69(148-75-38(86-20(2)102)49(113)43(107)25(7-91)132-75)36(142-82)18-130-83-71(150-77-41(89-23(5)105)53(117)66(32(14-98)139-77)145-80-61(125)56(120)45(109)27(9-93)134-80)59(123)48(112)35(141-83)17-129-74-39(87-21(3)103)51(115)65(31(13-97)137-74)144-79-60(124)55(119)44(108)26(8-92)133-79/h25-84,91-100,107-128H,7-18H2,1-6H3,(H,85,101)(H,86,102)(H,87,103)(H,88,104)(H,89,105)(H,90,106)/t25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43-,44+,45+,46+,47-,48-,49-,50-,51-,52-,53-,54-,55+,56+,57+,58+,59+,60-,61-,62-,63+,64-,65-,66-,67-,68-,69-,70-,71+,72+,73-,74-,75+,76+,77+,78+,79+,80+,81+,82+,83+,84-/m1/s1" }, "G79389NT": { "glytoucan_ac": "G79389NT", "mass": 836.29, "iupac": 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"species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": 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"uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": 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"gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", 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"https://pubchem.ncbi.nlm.nih.gov/substance/SID252293921", "id": "SID252293921", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4738.37, "inchi_key": "GNSJBHUQLNQGTJ-SKPLGZECSA-N", "publication": [], "smiles_isomeric": 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"detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N18", "parentid": "N7", "name": "N-glycan_a-L-Fucp_18" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N43", "parentid": "N9", "name": "N-glycan_a-L-Fucp_43" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 19, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(2+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:1o(6+1)14d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|11|13|14\\nSubtreeLinkageID1:o(3+1)d\\nRES\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\nLIN\\n14:15d(2+1)16n\\n15:15o(4+1)17d\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|11|13|14\\nSubtreeLinkageID1:o(3+1)d\\nRES\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\nLIN\\n16:18d(2+1)19n\\n17:18o(4+1)20d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7539", "id": "7539", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7539", "id": "7539", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P13987-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P13987/annotated", "id": "P13987", "database": "UniCarbKB" } ], "protein_name": "CD59 glycoprotein", "gene_name": "CD59", "position": 43 } ], "mass_pme": 3119.59, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G79958YT", "id": "G79958YT", "database": "GlyTouCan" } ], "taxid": 10116, "name": "Rattus norvegicus" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11643", "id": "11643", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16270", "id": "16270", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+29105", "id": "29105", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+973", "id": "973", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+974", "id": "974", "database": "CarbBank" }, { "url": 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"C([C@@H]1[C@@H]([C@@H]([C@H]([C@H](O1)O[C@H]2[C@H]([C@H](O[C@@H]([C@@H]2O)O[C@H]3[C@H]([C@H](O[C@@H]([C@@H]3O)O[C@H]4[C@H]([C@H](O[C@@H]([C@@H]4O)O[C@H]5[C@H](O[C@H]([C@@H]([C@H]5O)O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)O)O)CO)CO)CO)O)CO)O)CO)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 0, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpa1-3DGalpa1-3DGalpa1-3DGalpa1-4DGalpb1-4DGlcpb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00059MO", "name": "Pk-Antigen" } ], "inchi": "" }, "G50068PO": { "glytoucan_ac": "G50068PO", "mass": 3683.31, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,18,17/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f6-g2_h4-i1_i6-j2_k2-l1_k4-o1_l4-m1_m3-n2_o4-p1_p6-q2", "glycoct": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G50068PO", "id": "G50068PO", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+21697", "id": "21697", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24938", "id": "24938", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+41813", "id": "41813", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1574", "id": "1574", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1935", "id": "1935", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 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"gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P19526-1", "gene": "FUT1", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 1" }, { "uniprot_canonical_ac": "Q6P4F1-1", "gene": "FUT10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q495W5-1", "gene": "FUT11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "Q10981-1", "gene": "FUT2", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 2" }, { "uniprot_canonical_ac": "P21217-1", "gene": "FUT3", "gene_link": "", "protein_name": "Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", 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"rxn.Q9BT22-1", "detachedby": "", "id": "N54", "parentid": "N6", "name": "N-glycan_a-L-Fucp_54" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 4, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00052MO", "name": "Lewis Y" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7661", "id": "7661", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07288-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07288/annotated", "id": "P07288", "database": "UniCarbKB" } ], "protein_name": "Prostate-specific antigen", "gene_name": "KLK3", "position": 69 } ], "mass_pme": 2769.39, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G68318SH": { "glytoucan_ac": "G68318SH", "mass": 1931.69, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,10,9/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_i4-j1", "glycoct": 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} } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1738", "id": "1738", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/7104", "id": "7104", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2408.22, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" 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], "glycoprotein": [], "mass_pme": 3364.71, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G05187WH": { "glytoucan_ac": "G05187WH", "mass": 1882.56, "iupac": "beta-D-GalpNAc?S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GalpNAc?S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O_?*OSO/3=O/3=O]/1-1-2-3-1-4-3-1-4/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10s:sulfate\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16s:sulfate\\n17s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(-1+1)10n\\n10:9d(2+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(-1+1)16n\\n16:15d(2+1)17n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G05187WH", "id": "G05187WH", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+46675", "id": "46675", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=17050", "id": "17050", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2734", "id": "2734", "database": "GlyConnect" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11966", "id": "G11966", "database": "KEGG Glycan" }, { "url": "http://www.unicarbkb.org/structure/1205", "id": "1205", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2260.98, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" } ], "inchi": "" }, "G09393NL": { "glytoucan_ac": "G09393NL", "mass": 2662.97, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,15,14/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-6-5-4-2-6-5-2-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g3-h1_g4-i1_j2-k1_j6-n1_k3-l1_k4-m1_n4-o1", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:a-lgal-HEX-1:5|6:d\\n13b:b-dgal-HEX-1:5\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:a-lgal-HEX-1:5|6:d\\n18b:b-dgal-HEX-1:5\\n19b:b-dglc-HEX-1:5\\n20s:n-acetyl\\n21b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(3+1)12d\\n12:10o(4+1)13d\\n13:5o(6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(3+1)17d\\n17:15o(4+1)18d\\n18:14o(6+1)19d\\n19:19d(2+1)20n\\n20:19o(4+1)21d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G09393NL", "id": "G09393NL", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_40605_D000", "id": "carbNlink_40605_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=18960", "id": "18960", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G02669", "id": "G02669", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848292", "id": "CID91848292", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279757", "id": "SID252279757", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n\\n22:17o(6+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(6+2)26d\\n26:26d(5+1)27n", 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"Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", 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"gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": 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"glycoprotein": [ { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 296 }, { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 325 } ], "mass_pme": 2337.18, "inchi_key": "", "publication": [ { "title": "Protein and carbohydrate structural analysis of a recombinant soluble CD4 receptor by mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2592374", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2021", "id": "2021", "database": "UniCarbKB" } ], "authors": "Carr SA, Hemling ME, Folena-Wasserman G, Sweet RW, Anumula K, Barr JR, 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of glycoconjugates bearing the type 2 chain-backbone structure in human fetal, normal and neoplastic gastrointestinal tract.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1618643", "journal": "Histochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G08371CD", "id": "G08371CD", "database": "GlyTouCan" } ], "authors": "Nakayama J, Ota H, Katsuyama T, Kanai M, Taki T, Hirabayashi Y, Suzuki Y", "date": "1992", "pmid": "1618643" }, { "title": "A monoclonal antibody directed to N-acetylneuraminosyl-alpha 2 leads to 6-galactosyl residue in gangliosides and glycoproteins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6194157", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G08371CD", "id": "G08371CD", "database": "GlyTouCan" } ], "authors": "Hakomori S, Patterson CM, Nudelman E, Sekiguchi K", "date": "1983", "pmid": "6194157" } ], "smiles_isomeric": 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"CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@H]([C@H]([C@@H]([C@H](O2)CO[C@@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO)O)O)O)O)O[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@@H]6[C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DManpa1-2DManpa1-2DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00027MO", "name": "N-Glycan truncated motif. 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09327-1", "gene": "MGAT3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside 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{ "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252297064", "id": "SID252297064", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3999.01, "inchi_key": "ANYOUGJAPGNTDI-IUJMCBRLSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" 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"glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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1925.72, "iupac": "beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4-2-5-2-4-2-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_i4-j1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28380", "id": "28380", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1479", "id": "1479", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1793", "id": "1793", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2374.23, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+47985", "id": "47985", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+47988", "id": "47988", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=17114", "id": "17114", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 669.32, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 1, "name": "Other" }, { "residue": "hex", "count": 0, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [], "inchi": "" }, "G97168TC": { "glytoucan_ac": "G97168TC", "mass": 1509.53, "iupac": 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Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3057", "id": "3057", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3057", "id": "3057", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3057", "id": "3057", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. 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"database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 359 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 124 }, { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 177 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 201 }, { "uniprot_canonical_ac": "P40225-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P40225/annotated", "id": "P40225", "database": "UniCarbKB" } ], "protein_name": "Thrombopoietin", "gene_name": "THPO", "position": 197 } ], "mass_pme": 2582.31, "inchi_key": "", "publication": [ { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3055", "id": "3055", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "url": 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"rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N78", "parentid": "N9", "name": "N-glycan_b-D-Galp_78" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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}, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7503", "id": "7503", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P13987-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P13987/annotated", "id": "P13987", "database": "UniCarbKB" } ], "protein_name": "CD59 glycoprotein", "gene_name": "CD59", "position": 43 } ], "mass_pme": 2670.36, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=36838", "id": "36838", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=27490", "id": "27490", "database": "Glycosciences.de" }, { "url": "https://www.rcsb.org/structure/3ije", "id": "3ije", "database": "PDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861345", "id": "CID91861345", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295329", "id": "SID252295329", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1352.69, "inchi_key": "BKOOSNWRVAPNIR-RSEYRUDVSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O)O)O)O)O[C@@H]6[C@H]([C@H]([C@@H]([C@H](O6)CO)O)O)O)O)O)NC(=O)C)O", "residues": [ { "attachedby": 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"N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DManpa1-4DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "InChI=1S/C40H68N2O31/c1-9(48)41-17-22(53)31(13(5-45)64-35(17)62)70-36-18(42-10(2)49)23(54)32(14(6-46)67-36)71-40-30(61)34(73-39-28(59)25(56)20(51)12(4-44)66-39)21(52)16(69-40)8-63-37-29(60)26(57)33(15(7-47)68-37)72-38-27(58)24(55)19(50)11(3-43)65-38/h11-40,43-47,50-62H,3-8H2,1-2H3,(H,41,48)(H,42,49)/t11-,12-,13-,14-,15-,16-,17-,18-,19-,20-,21-,22-,23-,24+,25+,26-,27+,28+,29+,30+,31-,32-,33-,34+,35-,36+,37+,38-,39-,40+/m1/s1" }, "G36303CE": { "glytoucan_ac": "G36303CE", "mass": 3683.31, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,18,17/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k4-o1_l4-m1_m3-n2_o4-p1_p6-q2", "glycoct": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36303CE", "id": "G36303CE", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": 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"url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11687", "id": "11687", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35927", "id": "35927", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16307", "id": "16307", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3047.57, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+6042", "id": "6042", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1051", "id": "1051", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1313", "id": "1313", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2504", "id": "2504", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1572.82, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91854312", "id": "CID91854312", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286897", "id": "SID252286897", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2619.35, "inchi_key": "OERLULXRGIIZOR-CLXLTDLQSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)NC(=O)C)O)NC(=O)C)O)O)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@H]([C@H](O8)CO)O)O)NC(=O)C)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N30", "parentid": "N5", "name": "N-glycan_b-D-GalpNAc_30" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N74", "parentid": "N9", "name": "N-glycan_b-D-GalpNAc_74" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 8, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpNAcb1-4DGlcpNAcb1-2[DGalpNAcb1-4DGlcpNAcb1-6]DManpa1-6[DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": "InChI=1S/C82H136N8O56/c1-20(100)83-39-56(117)64(32(13-95)128-72(39)125)139-77-44(88-25(6)105)60(121)68(36(17-99)134-77)143-80-63(124)69(144-82-71(61(122)50(111)31(12-94)132-82)146-79-46(90-27(8)107)59(120)67(35(16-98)136-79)142-76-42(86-23(4)103)55(116)49(110)30(11-93)131-76)52(113)38(137-80)19-127-81-70(145-78-45(89-26(7)106)58(119)66(34(15-97)135-78)141-75-41(85-22(3)102)54(115)48(109)29(10-92)130-75)62(123)51(112)37(138-81)18-126-73-43(87-24(5)104)57(118)65(33(14-96)133-73)140-74-40(84-21(2)101)53(114)47(108)28(9-91)129-74/h28-82,91-99,108-125H,9-19H2,1-8H3,(H,83,100)(H,84,101)(H,85,102)(H,86,103)(H,87,104)(H,88,105)(H,89,106)(H,90,107)/t28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47+,48+,49+,50-,51-,52-,53-,54-,55-,56-,57-,58-,59-,60-,61+,62+,63+,64-,65-,66-,67-,68-,69+,70+,71+,72-,73-,74+,75+,76+,77+,78+,79+,80+,81+,82-/m1/s1" }, "G94085FI": { "glytoucan_ac": "G94085FI", "mass": 2458.87, "iupac": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+2961", "id": "2961", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10482", "id": "10482", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16624", "id": "16624", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3061.55, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G87656FV": { "glytoucan_ac": "G87656FV", "mass": 2265.83, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,11,10/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-7-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j3-k2", "glycoct": 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"gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 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"GlyTouCan" } ], "authors": "Irie F, Hashikawa T, Tai T, Seyama Y, Hirabayashi Y", "date": "1994", "pmid": "7710562" }, { "title": "Generation of a monoclonal antibody specific for a new class of minor ganglioside antigens, GQ1b alpha and GT1a alpha: its binding to dorsal and lateral horn of human thoracic cord.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8221098", "journal": "Brain research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G02149VR", "id": "G02149VR", "database": "GlyTouCan" } ], "authors": "Kusunoki S, Chiba A, Hirabayashi Y, Irie F, Kotani M, Kawashima I, Tai T, Nagai Y", "date": "1993", "pmid": "8221098" }, { "title": "A trisialoganglioside containing a sialyl alpha 2-6 N-acetylgalactosamine residue is a cholinergic-specific antigen, Chol-1 alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1587788", "journal": "Journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G02149VR", "id": "G02149VR", "database": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_20915_D000", "id": "carbNlink_20915_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=19874", "id": "19874", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G04026", "id": "G04026", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91857763", "id": "CID91857763", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291031", "id": "SID252291031", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 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"N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": "InChI=1S/C92H153N7O66/c1-21(111)93-41-55(125)70(32(12-104)143-80(41)140)156-83-44(96-24(4)114)59(129)75(37(17-109)149-83)162-90-69(139)77(163-92-79(165-86-46(98-26(6)116)57(127)71(34(14-106)151-86)157-82-42(94-22(2)112)54(124)48(118)28(8-100)144-82)68(138)76(38(18-110)153-92)158-84-45(97-25(5)115)58(128)73(35(15-107)150-84)160-88-66(136)62(132)50(120)30(10-102)146-88)53(123)40(154-90)20-142-91-78(164-85-47(99-27(7)117)60(130)74(36(16-108)152-85)161-89-67(137)63(133)51(121)31(11-103)147-89)64(134)52(122)39(155-91)19-141-81-43(95-23(3)113)56(126)72(33(13-105)148-81)159-87-65(135)61(131)49(119)29(9-101)145-87/h28-92,100-110,118-140H,8-20H2,1-7H3,(H,93,111)(H,94,112)(H,95,113)(H,96,114)(H,97,115)(H,98,116)(H,99,117)/t28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47-,48+,49+,50+,51+,52-,53-,54-,55-,56-,57-,58-,59-,60-,61+,62+,63+,64+,65-,66-,67-,68+,69+,70-,71-,72-,73-,74-,75-,76-,77+,78+,79+,80?,81-,82+,83+,84+,85+,86+,87+,88+,89+,90+,91+,92-/m1/s1" }, 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:x-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:a-dman-HEX-1:5\\n16b:x-dglc-HEX-1:5\\n17b:x-dgal-HEX-1:5\\n18s:n-acetyl\\n19b:x-dglc-HEX-1:5\\n20b:x-dgal-HEX-1:5\\n21s:n-acetyl\\n22b:x-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(4+1)13d\\n13:13d(2+1)14n\\n14:5o(6+1)15d\\n15:15o(-1+1)16d\\n16:16o(-1+1)17d\\n17:16d(2+1)18n\\n18:15o(-1+1)19d\\n19:19o(-1+1)20d\\n20:19d(2+1)21n\\n21:1o(6+1)22d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n23b:x-dglc-HEX-1:5\\n24b:x-dgal-HEX-1:5\\n25s:n-acetyl\\nLIN\\n22:23o(-1+1)24d\\n23:23d(2+1)25n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n26b:x-dglc-HEX-1:5\\n27b:x-dgal-HEX-1:5\\n28s:n-acetyl\\nLIN\\n24:26o(-1+1)27d\\n25:26d(2+1)28n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n29b:x-dglc-HEX-1:5\\n30b:x-dgal-HEX-1:5\\n31s:n-acetyl\\nLIN\\n26:29o(-1+1)30d\\n27:29d(2+1)31n\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n32b:x-dglc-HEX-1:5\\n33b:x-dgal-HEX-1:5\\n34s:n-acetyl\\nLIN\\n28:32o(-1+1)33d\\n29:32d(2+1)34n\\nUND5:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n35b:x-dglc-HEX-1:5\\n36b:x-dgal-HEX-1:5\\n37s:n-acetyl\\nLIN\\n30:35o(-1+1)36d\\n31:35d(2+1)37n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/153", "id": "153", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 } ], "mass_pme": 5610.84, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4817", "id": "4817", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 12, "name": "Hexose" }, { "residue": "hexnac", "count": 12, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 25, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G59168YE": { "glytoucan_ac": "G59168YE", "mass": 674.24, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)-?-D-GlcpNAc(1->", "wurcs": 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"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4683", "id": "4683", "database": "CarbBank" }, { "url": "xxx/yyy/GOG72", "id": "GOG72", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5288", "id": "5288", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/715", "id": "715", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23639", "id": "23639", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7553", "id": "7553", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10766", "id": "G10766", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91849334", "id": "CID91849334", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252280980", "id": "SID252280980", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1533", "id": "1533", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": 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[], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { 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"gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q6P4F1-1", "gene": "FUT10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q495W5-1", "gene": "FUT11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 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"Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q5F2L2-1", "gene": "Fut10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q8BHC9-1", "gene": "Fut11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2554", "id": "2554", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/6591", "id": "6591", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01570-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01570/annotated", "id": "P01570", "database": "UniCarbKB" } ], "protein_name": "Interferon alpha-14", "gene_name": "IFNA14", "position": 95 } ], "mass_pme": 2756.4, "inchi_key": "", "publication": [ { "title": "Structural characterisation of N-linked and O-linked oligosaccharides derived from interferon-alpha2b and interferon-alpha14c produced by Sendai-virus-induced human peripheral blood leukocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9654101", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/6591", "id": "6591", "database": "UniCarbKB" } ], "authors": "Nyman TA, Kalkkinen N, Tolo H, Helin J", "date": "1998", "pmid": "9654101" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", 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}, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine 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"database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1948", "id": "1948", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25870", "id": "25870", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855331", "id": "CID91855331", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288126", "id": "SID252288126", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/95", "id": "95", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02724-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02724/annotated", "id": "P02724", "database": "UniCarbKB" } ], "protein_name": "Glycophorin-A", "gene_name": "GYPA", "position": 38 }, { "uniprot_canonical_ac": "P02724-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02724/annotated", "id": "P02724", "database": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+5775", "id": "5775", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5777", "id": "5777", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5778", "id": "5778", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5779", "id": "5779", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5780", "id": "5780", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5781", "id": "5781", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+887", "id": "887", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+898", "id": "898", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+900", "id": "900", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=954", "id": "954", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1210", "id": "1210", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1148.59, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G07947TY": { "glytoucan_ac": "G07947TY", "mass": 2516.91, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-1-4-1-4-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_k3-l1_l4-m1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide 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"protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": 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3119.59, "inchi_key": "", "publication": [ { "title": "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8639592", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3157", "id": "3157", "database": "UniCarbKB" } ], "authors": "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "date": "1996", "pmid": "8639592" }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1388166", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3157", "id": "3157", "database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N36", "parentid": "N10", "name": "N-glycan_b-D-GlcpNAc_36" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N37", "parentid": "N36", "name": "N-glycan_b-D-Galp_37" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G21470TX": { "glytoucan_ac": "G21470TX", "mass": 3027.08, "iupac": 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"position": 177 } ], "mass_pme": 3753.88, "inchi_key": "QZQRTZHGWYTMFI-AVCAGQRYSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10704524", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "date": "2000", "pmid": "10704524" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1195", "id": "1195", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": 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"?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-4-5-6-3/a4-b1_b4-c1_c3-d1_c6-h1_d?-e1_e?-f1_f?-g2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n10s:n-acetyl\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:8o(-1+2)9d\\n9:9d(5+1)10n\\n10:7d(2+1)11n\\n11:5o(6+1)12d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2139", "id": "2139", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02787-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02787/annotated", "id": "P02787", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "TF", "position": 432 }, { "uniprot_canonical_ac": "P02787-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02787/annotated", "id": "P02787", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "TF", "position": 630 } ], "mass_pme": 1958.99, "inchi_key": "", "publication": [ { "title": "N-glycan patterns of human transferrin produced in Trichoplusia ni insect cells: effects of mammalian galactosyltransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10929010", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "authors": "Ailor E, Takahashi N, Tsukamoto Y, Masuda K, Rahman BA, Jarvis DL, Lee YC, Betenbaugh MJ", "date": "2000", "pmid": "10929010" }, { "title": "X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10029548", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "authors": "Bewley MC, Tam BM, Grewal J, He S, Shewry S, Murphy ME, Mason AB, Woodworth RC, Baker EN, MacGillivray RT", "date": "1999", "pmid": "10029548" }, { "title": "Alteration of asparagine-linked glycosylation in serum transferrin of patients with hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8174273", "journal": "Clinica chimica acta; international journal of clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "authors": "Matsumoto K, Maeda Y, Kato S, Yuki H", "date": "1994", "pmid": "8174273" }, { "title": "Carbohydrate deficient glycoprotein syndrome type II: a deficiency in Golgi localised N-acetyl-glucosaminyltransferase II.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7944531", "journal": "Archives of disease in childhood", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "authors": "Jaeken J, Schachter H, Carchon H, De Cock P, Coddeville B, Spik G", "date": "1994", "pmid": "7944531" }, { "title": "N-glycosylation site mapping of human serotransferrin by serial lectin affinity chromatography, fast atom bombardment-mass spectrometry, and 1H nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1456441", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4212", "id": "4212", "database": "UniCarbKB" } ], "authors": "Fu D, van Halbeek H", "date": "1992", "pmid": "1456441" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G26985TZ": { 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Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalp[3S]b1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G77939BF": { "glytoucan_ac": "G77939BF", "mass": 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"name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4DManpa1-3[DGalpb1-4DGlcpNAcb1-4DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": 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"", "publication": [ { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1929", "id": "1929", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": 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"protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2666", "id": "2666", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4475", "id": "4475", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 124 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 385 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 359 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 177 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 201 } ], "mass_pme": 2006.02, "inchi_key": "", "publication": [ { "title": "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10704524", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4475", "id": "4475", "database": "UniCarbKB" } ], "authors": "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "date": "2000", "pmid": "10704524" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": 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}, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": 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"id": "G10922", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91847637", "id": "CID91847637", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252278975", "id": "SID252278975", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1721", "id": "1721", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 }, { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 296 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": 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and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1721", "id": "1721", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1721", "id": "1721", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by 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UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q8K2A8-1", "gene": "Alg3", "gene_link": "", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/3063", "id": "3063", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4473", "id": "4473", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 124 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 385 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 359 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 177 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 201 } ], "mass_pme": 2210.12, "inchi_key": "", "publication": [ { "title": "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10704524", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4473", "id": "4473", "database": "UniCarbKB" } ], "authors": "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "date": "2000", "pmid": "10704524" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", 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sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28856", "id": "28856", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+6166", "id": "6166", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+6167", "id": "6167", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+6168", "id": "6168", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1229", "id": "1229", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1501", "id": 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"id": "N99", "parentid": "N59", "name": "N-glycan_a-L-Fucp_99" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" 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"id": "CID91859602", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252293227", "id": "SID252293227", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3306.67, "inchi_key": "OPMXXEADAVMMOZ-MQNIEJAESA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)O)NC(=O)C)O)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.P16442-1", "detachedby": 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}, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N50", "parentid": "N6", "name": "N-glycan_a-D-Galp_50" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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"InChI=1S/C101H167N7O74/c1-23(120)102-45-30(127)8-101(100(154)155,182-82(45)52(129)31(128)9-109)158-22-44-56(133)68(145)72(149)95(170-44)175-78-38(16-116)167-92(51(64(78)141)108-29(7)126)181-86-73(150)81(173-90-49(106-27(5)124)62(139)77(37(15-115)165-90)174-93-70(147)66(143)54(131)33(11-111)161-93)41(19-119)168-99(86)179-84-59(136)43(169-97(75(84)152)177-80-39(17-117)164-89(48(63(80)140)105-26(4)123)172-76-36(14-114)159-87(153)46(61(76)138)103-24(2)121)21-157-98-85(69(146)57(134)42(171-98)20-156-88-47(104-25(3)122)60(137)53(130)32(10-110)160-88)180-91-50(107-28(6)125)65(142)79(40(18-118)166-91)176-96-74(151)83(58(135)35(13-113)163-96)178-94-71(148)67(144)55(132)34(12-112)162-94/h30-99,109-119,127-153H,8-22H2,1-7H3,(H,102,120)(H,103,121)(H,104,122)(H,105,123)(H,106,124)(H,107,125)(H,108,126)(H,154,155)/t30-,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54-,55-,56-,57+,58-,59+,60+,61+,62+,63+,64+,65+,66-,67-,68-,69-,70+,71+,72+,73-,74+,75-,76+,77+,78+,79+,80+,81+,82+,83-,84-,85-,86-,87+,88+,89-,90-,91-,92-,93-,94+,95-,96-,97-,98-,99+,101+/m0/s1" 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"St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG101", "id": "GOG101", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14626", "id": "14626", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26156", "id": "26156", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858179", "id": "CID91858179", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291524", "id": "SID252291524", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "FYLJPFWQTDQJDL-KESBBKDPSA-N", "publication": [], "smiles_isomeric": 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"parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@@H]([C@@H]([C@H](C(O4)O)NC(=O)C)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)NC(=O)C)O)CO)CO)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00036MO", "name": "O-Glycan core 3 fuzzy" }, { "id": "G00038MO", "name": "O-Glycan core 4 fuzzy" }, { "id": "G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C47H78N4O34/c1-12(57)48-23-16(61)5-47(46(73)74,84-39(23)27(63)17(62)6-52)85-40-29(65)19(8-54)78-45(35(40)71)82-36-20(9-55)79-42(24(31(36)67)49-13(2)58)75-11-22-30(66)38(26(41(72)76-22)51-15(4)60)83-43-25(50-14(3)59)32(68)37(21(10-56)80-43)81-44-34(70)33(69)28(64)18(7-53)77-44/h16-45,52-56,61-72H,5-11H2,1-4H3,(H,48,57)(H,49,58)(H,50,59)(H,51,60)(H,73,74)/t16-,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27+,28-,29-,30-,31+,32+,33-,34+,35+,36+,37+,38+,39+,40-,41?,42+,43-,44-,45-,47-/m0/s1" }, "G03164NE": { "glytoucan_ac": "G03164NE", "mass": 3025.07, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(3+2)16d\\n16:16d(5+1)17n\\n17:12o(4+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:1o(6+1)23d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G03164NE", "id": "G03164NE", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44773_D000", "id": "carbNlink_44773_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=20256", "id": "20256", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G04589", "id": "G04589", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851871", "id": "CID91851871", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283982", "id": 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"InChI=1S/C115H188N8O84/c1-27-61(149)75(163)78(166)103(182-27)179-25-52-89(70(158)56(98(172)183-52)119-31(5)138)195-100-58(121-33(7)140)72(160)85(46(20-131)188-100)197-105-81(169)93(200-109-96(77(165)65(153)42(16-127)186-109)201-101-59(122-34(8)141)73(161)84(45(19-130)189-101)196-104-79(167)76(164)66(154)51(193-104)26-181-113(110(173)174)10-36(143)53(116-28(2)135)90(203-113)62(150)39(146)13-124)69(157)50(192-105)24-180-108-97(202-102-60(123-35(9)142)74(162)87(48(22-133)190-102)199-107-83(171)95(68(156)44(18-129)185-107)207-115(112(177)178)12-38(145)55(118-30(4)137)92(205-115)64(152)41(148)15-126)80(168)88(49(23-134)191-108)194-99-57(120-32(6)139)71(159)86(47(21-132)187-99)198-106-82(170)94(67(155)43(17-128)184-106)206-114(111(175)176)11-37(144)54(117-29(3)136)91(204-114)63(151)40(147)14-125/h27,36-109,124-134,143-172H,10-26H2,1-9H3,(H,116,135)(H,117,136)(H,118,137)(H,119,138)(H,120,139)(H,121,140)(H,122,141)(H,123,142)(H,173,174)(H,175,176)(H,177,178)/t27-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66-,67-,68-,69+,70+,71+,72+,73+,74+,75+,76-,77-,78-,79+,80-,81-,82+,83+,84+,85+,86+,87+,88+,89+,90+,91+,92+,93-,94-,95-,96-,97-,98?,99-,100-,101-,102-,103+,104-,105-,106-,107-,108-,109+,113+,114-,115-/m0/s1" 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+11860", "id": "11860", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13806", "id": "13806", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16162", "id": "16162", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16605", "id": "16605", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+17381", "id": "17381", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+20294", "id": "20294", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+20311", "id": "20311", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2600", "id": "2600", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2601", "id": "2601", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+30065", "id": "30065", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+41180", "id": "41180", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+49618", "id": "49618", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+793", "id": "793", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+794", "id": "794", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=191", "id": "191", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=244", "id": "244", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1148.59, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G84778XH": { "glytoucan_ac": "G84778XH", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,18,17/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-5-3-1-4-5-1-6-4-5/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m6-n2_o3-p1_o4-q1_q3-r2", "glycoct": 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"uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": 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"gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG267", "id": "GOG267", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13338", "id": "13338", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23078", "id": "23078", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854236", "id": "CID91854236", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286798", "id": "SID252286798", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "HQTRDWLQIHWHPK-HJIQCQPYSA-N", "publication": [], "smiles_isomeric": 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"no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N43", "parentid": "N9", "name": "N-glycan_a-L-Fucp_43" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", 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4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13612", "id": "13612", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2471", "id": "2471", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23855", "id": "23855", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845247", "id": "CID91845247", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276107", "id": "SID252276107", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/3989", "id": "3989", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2623.34, "inchi_key": "UDSUDDNYSFVSJR-XIUWFDEYSA-N", "publication": [], "smiles_isomeric": 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"N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N28", "parentid": "N7", "name": "N-glycan_b-D-Galp_28" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE10", "parentid": "N7", "name": "N-glycan_a-D-Neu5Acp_E10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-4[DGlcpNAcb1-2]DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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{ "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q6P4F1-1", "gene": "FUT10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q495W5-1", "gene": "FUT11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "P21217-1", "gene": "FUT3", "gene_link": "", "protein_name": "Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", 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"evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2934.4, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5142", "id": "5142", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+28233", "id": "28233", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35898", "id": "35898", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15191", "id": "15191", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2772.43, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00065MO", "name": "VIM" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G47279LF": { "glytoucan_ac": "G47279LF", "mass": 3755.33, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,19,18/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-5-3-1-4-1-4-5-1-4-6/a4-b1_a6-s1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k6-q1_l4-m1_m3-n1_n4-o1_o3-p2_q4-r1", "glycoct": 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"gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { 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"gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13871", "id": "13871", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1035", "id": "1035", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24817", "id": "24817", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855899", "id": "CID91855899", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288807", "id": "SID252288807", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4652.33, "inchi_key": "LTIXKOTUJJBXSI-RCKRTYIXSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1995", "id": "1995", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": 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"Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N41", "parentid": "N2", "name": "N-glycan_a-L-Fucp_41" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N62", "parentid": "N3", "name": "N-glycan_b-D-GlcpNAc_62" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N63", "parentid": "N62", "name": "N-glycan_b-D-Galp_63" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N99", "parentid": "N59", "name": "N-glycan_a-L-Fucp_99" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 4, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=O-glycan&jump_to_nav=true", "name": "O-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10716", "id": "10716", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11842", "id": "11842", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13242", "id": "13242", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13565", "id": "13565", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14522", "id": "14522", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14962", "id": "14962", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+15235", "id": "15235", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+21052", "id": "21052", 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12163", "id": "12163", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16003", "id": "16003", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2176", "id": "2176", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=909", "id": "909", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 856.44, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [ { "id": "G00032MO", "name": "O-Glycan core 1 fuzzy" } ], "inchi": "" }, "G78276SQ": { "glytoucan_ac": "G78276SQ", "mass": 2239.8, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-4-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j3-k1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "7", "parentid": "N3", "name": "unassigned" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "10", "parentid": "N8", "name": "unassigned" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G96251ED": { "glytoucan_ac": "G96251ED", "mass": 2738.0, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,15,14/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-i1_d4-e1_d6-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1_m3-n1_n4-o1", "glycoct": 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"Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { 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"Immunohistochemical demonstration of glycoconjugates bearing the type 2 chain-backbone structure in human fetal, normal and neoplastic gastrointestinal tract.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1618643", "journal": "Histochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G44345UH", "id": "G44345UH", "database": "GlyTouCan" } ], "authors": "Nakayama J, Ota H, Katsuyama T, Kanai M, Taki T, Hirabayashi Y, Suzuki Y", "date": "1992", "pmid": "1618643" }, { "title": "Northern hybridization analysis of VH gene expression in murine monoclonal antibodies directed to cancer-associated ganglioside antigens having various sialic acid linkages.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2111348", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G44345UH", "id": "G44345UH", "database": "GlyTouCan" } ], "authors": "Zenita K, Hirashima K, Shigeta K, Hiraiwa N, Takada A, Hashimoto K, 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"url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/830", "id": "830", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/3969", "id": "3969", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P03956-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P03956/annotated", "id": "P03956", "database": "UniCarbKB" } ], "protein_name": "Interstitial collagenase", "gene_name": "MMP1", "position": 120 } ], "mass_pme": 2797.42, "inchi_key": "", "publication": [ { "title": "N-glycan structures of matrix metalloproteinase-1 derived from human fibroblasts and from HT-1080 fibrosarcoma cells.", "url": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14306", "id": "14306", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25749", "id": "25749", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853403", "id": "CID91853403", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285816", "id": "SID252285816", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3641.86, "inchi_key": "PVQCKSXICIZFML-KLNCRZNJSA-N", "publication": [], "smiles_isomeric": 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N18", "parentid": "N7", "name": "N-glycan_a-L-Fucp_18" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N43", "parentid": "N9", "name": "N-glycan_a-L-Fucp_43" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 4, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6]DManpa1-6[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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}, "G67656PN": { "glytoucan_ac": "G67656PN", "mass": 2296.82, "iupac": "alpha-D-NeupAc-(2->3/6),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,12,11/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-2-5-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_j4-k1_l1-f3|f6|h3|h6|k3|k6}", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\nUND\\nUND1:100.0:100.0\\nParentIDs:9|12|16\\nSubtreeLinkageID1:o(3|6+1)d\\nRES\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G67656PN", "id": "G67656PN", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21440_P", "id": "carbNlink_21440_P", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21479_P", "id": "carbNlink_21479_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28987", "id": "28987", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2857.45, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": 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"title": "Different fine binding specificities of monoclonal antibodies to disialosylganglioside GD2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3170507", "journal": "Journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G98544DH", "id": "G98544DH", "database": "GlyTouCan" } ], "authors": "Tai T, Kawashima I, Tada N, Dairiki K", "date": "1988", "pmid": "3170507" }, { "title": "Monoclonal antibody-defined correlations in melanoma between levels of GD2 and GD3 antigens and antibody-mediated cytotoxicity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3815333", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G98544DH", "id": "G98544DH", "database": "GlyTouCan" } ], "authors": "Thurin J, Thurin M, Kimoto Y, Herlyn M, Lubeck MD, Elder DE, Smereczynska M, Karlsson KA, Clark WM Jr, Steplewski Z, et al.", "date": "1987", "pmid": "3815333" }, { "title": "Cell-surface antigens of melanoma recognized by human 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}, "G23665FB": { "glytoucan_ac": "G23665FB", "mass": 748.27, "iupac": "?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)]-alpha-D-GalpNAc(1->", "wurcs": "WURCS=2.0/3,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5]/1-2-3-3/a?-b1_a?-d1_b?-c1", "glycoct": "RES\\n1b:a-dgal-HEX-1:5\\n2b:x-dgal-HEX-1:5\\n3b:x-dglc-HEX-1:5\\n4b:x-dgal-HEX-1:5\\n5s:n-acetyl\\n6s:n-acetyl\\nLIN\\n1:1o(-1+1)2d\\n2:1o(-1+1)3d\\n3:3o(-1+1)4d\\n4:3d(2+1)5n\\n5:1d(2+1)6n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/652", "id": "652", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/592", "id": "592", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/652", "id": "652", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 944.49, "inchi_key": "", "publication": [ { "title": "Structural characterisation of N-linked and O-linked oligosaccharides derived from interferon-alpha2b and interferon-alpha14c produced by Sendai-virus-induced human peripheral blood leukocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9654101", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/652", "id": "652", "database": "UniCarbKB" } ], "authors": "Nyman TA, Kalkkinen N, Tolo H, Helin J", "date": "1998", "pmid": "9654101" }, { "title": "Natural human interferon-alpha 2 is O-glycosylated.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2049076", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/652", "id": "652", "database": "UniCarbKB" } ], "authors": "Adolf GR, Kalsner I, Ahorn H, Maurer-Fogy I, Cantell K", "date": "1991", "pmid": "2049076" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 4, "motifs": [], "inchi": "" }, "G16344ZG": { "glytoucan_ac": "G16344ZG", "mass": 2157.7, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/8,11,10/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_3*OSO/3=O/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-7-8/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1", 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24934", "id": "24934", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8111", "id": "8111", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12670", "id": "12670", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3392.71, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { 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"title": "Core 2 branching beta1,6-N-acetylglucosaminyltransferase and high endothelial venule-restricted sulfotransferase collaboratively control lymphocyte homing.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/14593101", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Hiraoka N, Kawashima H, Petryniak B, Nakayama J, Mitoma J, Marth JD, Lowe JB, Fukuda M", "date": "2004", "pmid": "14593101" }, { "title": "Complement regulatory protein C1 inhibitor binds to selectins and interferes with endothelial-leukocyte adhesion.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/14568956", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Cai S, Davis AE 3rd", "date": "2003", "pmid": "14568956" }, { "title": "Glycosylation 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specificities function in the reconstitution of high endothelial cell ligands for L-selectin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10330415", "journal": "The Journal of cell biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Bistrup A, Bhakta S, Lee JK, Belov YY, Gunn MD, Zuo FR, Huang CC, Kannagi R, Rosen SD, Hemmerich S", "date": "1999", "pmid": "10330415" }, { "title": "L-selectin ligands expressed by human leukocytes are HECA-452 antibody-defined carbohydrate epitopes preferentially displayed by P-selectin glycoprotein ligand-1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10528213", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Tu L, Murphy PG, Li X, Tedder TF", "date": "1999", "pmid": "10528213" }, { "title": "Reconstitution of functional L-selectin ligands on a cultured human endothelial cell line by cotransfection of alpha1-->3 fucosyltransferase VII and newly cloned GlcNAcbeta:6-sulfotransferase cDNA.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10200296", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Kimura N, Mitsuoka C, Kanamori A, Hiraiwa N, Uchimura K, Muramatsu T, Tamatani T, Kansas GS, Kannagi R", "date": "1999", "pmid": "10200296" }, { "title": "A novel, high endothelial venule-specific sulfotransferase expresses 6-sulfo sialyl Lewis(x), an L-selectin ligand displayed by CD34.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10435581", "journal": "Immunity", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Hiraoka N, Petryniak B, Nakayama J, Tsuboi S, Suzuki M, Yeh JC, Izawa D, Tanaka T, Miyasaka M, Lowe JB, Fukuda M", "date": "1999", "pmid": "10435581" }, { "title": "Identification of a major carbohydrate capping group of the L-selectin ligand on high endothelial venules in human lymph nodes as 6-sulfo sialyl Lewis X.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9556613", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Mitsuoka C, Sawada-Kasugai M, Ando-Furui K, Izawa M, Nakanishi H, Nakamura S, Ishida H, Kiso M, Kannagi R", "date": "1998", "pmid": "9556613" }, { "title": "L-Selectin ligands that are O-glycoprotease resistant and distinct from MECA-79 antigen are sufficient for tethering and rolling of lymphocytes on human high endothelial venules.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9456330", "journal": "The Journal of cell biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Clark RA, Fuhlbrigge RC, Springer TA", "date": "1998", "pmid": "9456330" }, { "title": "Molecular cloning and characterization of an N-acetylglucosamine-6-O-sulfotransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9712885", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Uchimura K, Muramatsu H, Kadomatsu K, Fan QW, Kurosawa N, Mitsuoka C, Kannagi R, Habuchi O, Muramatsu T", "date": "1998", "pmid": "9712885" }, { "title": "Sulfated sialyl Lewis X, the putative L-selectin ligand, detected on endothelial cells of high endothelial venules by a distinct set of anti-sialyl Lewis X antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9015359", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Mitsuoka C, Kawakami-Kimura N, Kasugai-Sawada M, Hiraiwa N, Toda K, Ishida H, Kiso M, Hasegawa A, Kannagi R", "date": "1997", "pmid": "9015359" }, { "title": "Role of a sialyl Lewis(x)-like epitope selectively expressed on vascular endothelial cells in local skin inflammation of the rat.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9164959", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Akahori T, Yuzawa Y, Nishikawa K, Tamatani T, Kannagi R, Miyasaka M, Okada H, Hotta N, Matsuo S", "date": "1997", "pmid": "9164959" }, { "title": "Expression of leukocyte fucosyltransferases regulates binding to E-selectin: relationship to previously implicated carbohydrate epitopes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9257857", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Wagers AJ, Stoolman LM, Kannagi R, Craig R, Kansas GS", "date": "1997", "pmid": "9257857" }, { "title": "Expression of sialyl Lewis(X) in rat heart with ischaemia/reperfusion and reduction of myocardial reperfusion injury by a monoclonal antibody against sialyl Lewis(X)", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8958810", "journal": "The Journal of pathology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Seko Y, Enokawa Y, Tamatani T, Kannagi R, Yagita H, Okumura K, Yazaki Y", "date": "1996", "pmid": "8958810" }, { "title": "Impairment of selectin-mediated leukocyte adhesion to venular endothelium in spontaneously hypertensive rats.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7560094", "journal": "The Journal of clinical investigation", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Suematsu M, Suzuki H, Tamatani T, Iigou Y, DeLano FA, Miyasaka M, Forrest MJ, Kannagi R, Zweifach BW, Ishimura Y, et al.", "date": "1995", "pmid": "7560094" }, { "title": "Recognition of consensus CHO structure in ligands for selectins by novel antibody against sialyl Lewis X.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7485559", "journal": "The American journal of physiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Tamatani T, Suematsu M, Tezuka K, Hanzawa N, Tsuji T, Ishimura Y, Kannagi R, Toyoshima S, Homma M", "date": "1995", "pmid": "7485559" }, { "title": "Specific expression of a complex sialyl Lewis X antigen on high endothelial venules of human lymph nodes: possible candidate for L-selectin ligand.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7684905", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G80722US", "id": "G80722US", "database": "GlyTouCan" } ], "authors": "Sawada M, Takada A, Ohwaki I, Takahashi N, Tateno H, Sakamoto J, Kannagi R", "date": "1993", "pmid": "7684905" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O[C@@]4(C[C@@H]([C@H]([C@@H](O4)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)COS(=O)(=O)O)O)NC(=O)C)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic 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"N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "P38649-1", "gene": "Abo", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14115", "id": "14115", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25515", "id": "25515", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859481", "id": "CID91859481", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252293083", "id": "SID252293083", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3147.58, "inchi_key": "FVLLTNAPTXBVMM-IMRYSFBVSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@H]8[C@@H]([C@H]([C@H]([C@H](O8)CO)O)O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N50", "parentid": "N6", "name": "N-glycan_a-D-Galp_50" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3[DNeup5Aca2-6]DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpa1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C96H158N6O71/c1-22-49(122)62(135)66(139)86(152-22)149-20-42-74(58(131)45(82(144)153-42)99-25(4)114)163-83-46(100-26(5)115)59(132)72(37(16-109)158-83)165-89-69(142)78(56(129)40(161-89)19-150-91-80(64(137)53(126)34(13-106)156-91)169-84-47(101-27(6)116)60(133)71(38(17-110)159-84)164-88-68(141)77(55(128)36(15-108)155-88)167-87-67(140)63(136)52(125)33(12-105)154-87)168-92-81(65(138)54(127)35(14-107)157-92)170-85-48(102-28(7)117)61(134)73(39(18-111)160-85)166-90-70(143)79(173-96(94(147)148)9-30(119)44(98-24(3)113)76(172-96)51(124)32(121)11-104)57(130)41(162-90)21-151-95(93(145)146)8-29(118)43(97-23(2)112)75(171-95)50(123)31(120)10-103/h22,29-92,103-111,118-144H,8-21H2,1-7H3,(H,97,112)(H,98,113)(H,99,114)(H,100,115)(H,101,116)(H,102,117)(H,145,146)(H,147,148)/t22-,29-,30-,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52-,53+,54+,55-,56+,57-,58+,59+,60+,61+,62+,63-,64-,65-,66-,67+,68+,69-,70+,71+,72+,73+,74+,75+,76+,77-,78-,79-,80-,81-,82+,83-,84-,85-,86+,87+,88-,89-,90-,91-,92+,95+,96-/m0/s1" }, "G39764AC": { "glytoucan_ac": "G39764AC", "mass": 2222.78, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d4-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(4+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G39764AC", "id": "G39764AC", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { 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"residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG343", "id": "GOG343", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13599", "id": "13599", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2795", "id": "2795", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23818", "id": "23818", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91849773", "id": "CID91849773", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252281482", "id": "SID252281482", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1197", "id": "1197", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4390.19, "inchi_key": "UNILDKFVYUTQPZ-MXWJVXLCSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1197", "id": "1197", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1197", "id": "1197", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": 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core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G17168RO": { "glytoucan_ac": "G17168RO", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j6-k2_l4-m1_m3-n2", "glycoct": 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"id": "3629", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3928", "id": "3928", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7988", "id": "7988", "database": "CarbBank" }, { "url": "xxx/yyy/GOG76", "id": "GOG76", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5596", "id": "5596", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1482", "id": "1482", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23492", "id": "23492", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7988", "id": "7988", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10752", "id": "G10752", "database": "KEGG Glycan" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11872", "id": "G11872", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848302", "id": "CID91848302", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279767", "id": "SID252279767", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/3629", "id": "3629", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02787-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02787/annotated", "id": "P02787", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "TF", "position": 432 }, { "uniprot_canonical_ac": "P02787-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02787/annotated", "id": "P02787", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "TF", "position": 630 } ], "mass_pme": 3579.79, "inchi_key": "OYZOYFQUKAVNPZ-KAGRNRGXSA-N", "publication": [ { "title": "N-glycan patterns of human transferrin produced in Trichoplusia ni insect cells: effects of mammalian galactosyltransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10929010", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3629", "id": "3629", "database": "UniCarbKB" } ], "authors": "Ailor E, Takahashi N, Tsukamoto Y, Masuda K, Rahman BA, Jarvis DL, Lee YC, Betenbaugh MJ", "date": "2000", "pmid": "10929010" }, { "title": "X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10029548", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3629", "id": "3629", "database": "UniCarbKB" } ], "authors": "Bewley MC, Tam BM, Grewal J, He S, Shewry S, Murphy ME, Mason AB, Woodworth RC, Baker EN, MacGillivray RT", "date": "1999", "pmid": "10029548" }, { "title": "Alteration of asparagine-linked glycosylation in serum transferrin of patients with hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8174273", "journal": "Clinica chimica acta; international journal of clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3629", "id": "3629", "database": "UniCarbKB" } ], "authors": "Matsumoto K, Maeda Y, Kato S, Yuki H", "date": "1994", "pmid": "8174273" }, { "title": "Carbohydrate deficient glycoprotein syndrome type II: a deficiency in Golgi localised N-acetyl-glucosaminyltransferase II.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7944531", "journal": "Archives of disease in childhood", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3629", "id": "3629", "database": "UniCarbKB" } ], "authors": "Jaeken J, Schachter H, Carchon H, De Cock P, Coddeville B, Spik G", "date": "1994", "pmid": "7944531" }, { "title": "N-glycosylation site mapping of human serotransferrin by serial lectin affinity chromatography, fast atom bombardment-mass spectrometry, and 1H nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1456441", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3629", "id": "3629", "database": "UniCarbKB" } ], "authors": "Fu D, van Halbeek H", "date": "1992", "pmid": "1456441" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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{ "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5862", "id": "5862", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=36052", "id": "36052", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2221.14, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G33433QA": { "glytoucan_ac": 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"database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7961", "id": "7961", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8486", "id": "8486", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=13190", "id": "13190", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24158", "id": "24158", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854160", "id": "CID91854160", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286708", "id": "SID252286708", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3886.98, "inchi_key": "PTDRLZDJFLDGAX-ZPFFQEIESA-N", "publication": [], "smiles_isomeric": 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"count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "LFucpa1-2DGalpb1-3DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6][LFucpa1-3]DManpa1-6[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4][LFucpa1-3]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "InChI=1S/C122H203N7O87/c1-26-58(148)75(165)83(173)112(185-26)183-25-50-96(69(159)51(105(181)189-50)123-30(5)141)204-107-53(125-32(7)143)72(162)95(46(21-139)196-107)208-119-90(180)99(211-122-104(216-110-56(128-35(10)146)74(164)94(45(20-138)199-110)207-118-89(179)81(171)64(154)39(14-132)193-118)102(214-115-86(176)78(168)61(151)29(4)188-115)97(47(22-140)200-122)209-108-54(126-33(8)144)73(163)93(44(19-137)197-108)206-117-88(178)80(170)63(153)38(13-131)192-117)67(157)48(201-119)24-184-120-103(100(212-113-84(174)76(166)59(149)27(2)186-113)68(158)49(202-120)23-182-106-52(124-31(6)142)70(160)92(42(17-135)195-106)205-116-87(177)79(169)62(152)37(12-130)191-116)215-109-55(127-34(9)145)71(161)91(43(18-136)198-109)203-111-57(129-36(11)147)98(66(156)41(16-134)190-111)210-121-101(82(172)65(155)40(15-133)194-121)213-114-85(175)77(167)60(150)28(3)187-114/h26-29,37-122,130-140,148-181H,12-25H2,1-11H3,(H,123,141)(H,124,142)(H,125,143)(H,126,144)(H,127,145)(H,128,146)(H,129,147)/t26-,27-,28-,29-,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62-,63-,64-,65-,66-,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79-,80-,81-,82-,83-,84-,85-,86-,87+,88+,89+,90-,91+,92+,93+,94+,95+,96+,97+,98+,99-,100-,101+,102-,103-,104-,105+,106+,107-,108-,109-,110-,111-,112+,113-,114-,115-,116-,117-,118-,119-,120-,121-,122+/m0/s1" 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\n11b:a-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:a-dman-HEX-1:5\\n16b:b-dglc-HEX-1:5\\n17s:n-acetyl\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(2+1)10d\\n10:9o(3+1)11d\\n11:11d(2+1)12n\\n12:5o(4+1)13d\\n13:13d(2+1)14n\\n14:5o(6+1)15d\\n15:15o(2+1)16d\\n16:16d(2+1)17n\\n17:1o(6+1)18d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G09125WG", "id": "G09125WG", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_41254_D000", "id": "carbNlink_41254_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=20028", "id": "20028", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G04255", "id": "G04255", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID71297609", "id": "CID71297609", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276543", "id": "SID252276543", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2681.38, "inchi_key": "JCLMUTMMHNPVSA-GLECNQQBSA-N", "publication": [], "smiles_isomeric": 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12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00066MO", "name": "Blood group A" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": 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"alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,18,17/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-5-3-1-4-5-1-4-5-6/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p6-q2", "glycoct": 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"Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": 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"P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=14566", "id": "14566", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26096", "id": "26096", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91852142", "id": "CID91852142", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252284304", "id": "SID252284304", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "UWCHOEPWYVPBQC-ZUWAMQJISA-N", "publication": [], "smiles_isomeric": 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"N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C140H228N10O102/c1-33-75(181)92(198)96(202)125(223-33)219-30-64-109(86(192)69(119(209)224-64)145-38(6)167)238-122-72(148-41(9)170)89(195)105(56(24-159)229-122)241-128-100(206)114(244-132-118(246-124-74(150-43(11)172)91(197)107(58(26-161)231-124)243-130-102(208)116(84(190)53(21-156)226-130)252-140(136(216)217)15-47(176)68(144-37(5)166)113(250-140)79(185)51(180)19-154)99(205)108(59(27-162)232-132)237-121-71(147-40(8)169)88(194)104(55(23-158)228-121)240-127-98(204)94(200)81(187)63(235-127)32-222-138(134(212)213)13-45(174)66(142-35(3)164)111(248-138)77(183)49(178)17-152)85(191)61(233-128)29-220-131-117(245-123-73(149-42(10)171)90(196)106(57(25-160)230-123)242-129-101(207)115(83(189)52(20-155)225-129)251-139(135(214)215)14-46(175)67(143-36(4)165)112(249-139)78(184)50(179)18-153)95(201)82(188)60(236-131)28-218-120-70(146-39(7)168)87(193)103(54(22-157)227-120)239-126-97(203)93(199)80(186)62(234-126)31-221-137(133(210)211)12-44(173)65(141-34(2)163)110(247-137)76(182)48(177)16-151/h33,44-132,151-162,173-209H,12-32H2,1-11H3,(H,141,163)(H,142,164)(H,143,165)(H,144,166)(H,145,167)(H,146,168)(H,147,169)(H,148,170)(H,149,171)(H,150,172)(H,210,211)(H,212,213)(H,214,215)(H,216,217)/t33-,44-,45-,46-,47-,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79+,80-,81-,82+,83-,84-,85+,86+,87+,88+,89+,90+,91+,92+,93-,94-,95-,96-,97+,98+,99-,100-,101+,102+,103+,104+,105+,106+,107+,108+,109+,110+,111+,112+,113+,114-,115-,116-,117-,118-,119+,120+,121-,122-,123-,124-,125+,126-,127-,128-,129-,130-,131-,132+,137+,138+,139-,140-/m0/s1" 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transferrin receptor contains a high-mannose oligosaccharide.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7780197", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4027", "id": "4027", "database": "UniCarbKB" } ], "authors": "Hayes GR, Williams A, Costello CE, Enns CA, Lucas JJ", "date": "1995", "pmid": "7780197" }, { "title": "Identification of the O-linked glycosylation site of the human transferrin receptor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1421757", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4027", "id": "4027", "database": "UniCarbKB" } ], "authors": "Hayes GR, Enns CA, Lucas JJ", "date": "1992", "pmid": "1421757" }, { "title": "Human transferrin receptor contains O-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2403553", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4027", "id": "4027", "database": "UniCarbKB" } ], "authors": "Do SI, Enns C, Cummings RD", "date": "1990", "pmid": "2403553" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G95919TI": { "glytoucan_ac": "G95919TI", "mass": 2443.9, "iupac": 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"id": "1665", "database": "UniCarbKB" } ], "authors": "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "date": "2000", "pmid": "10704524" }, { "title": "Structure of the asparagine-linked sugar chains of porcine kidney and human urine cerebroside sulfate activator protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11180632", "journal": "Journal of mass spectrometry : JMS", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1665", "id": "1665", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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3027.08, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,15,14/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-7/a4-b1_a6-o1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_l4-m1_m6-n2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n\\n22:1o(6+1)23d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G69381LS", "id": "G69381LS", "database": "GlyTouCan" } ], 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"N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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[ { "url": "http://www.unicarbkb.org/structure/7897", "id": "7897", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "Q63345-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q63345/annotated", "id": "Q63345", "database": "UniCarbKB" } ], "protein_name": "Myelin-oligodendrocyte glycoprotein", "gene_name": "", "position": 58 }, { "uniprot_canonical_ac": "P07340-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07340/annotated", "id": "P07340", "database": "UniCarbKB" } ], "protein_name": "Sodium/potassium-transporting ATPase subunit beta-1", "gene_name": "", "position": 158 }, { "uniprot_canonical_ac": "Q05546-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q05546/annotated", "id": "Q05546", "database": "UniCarbKB" } ], "protein_name": "Tenascin-R", "gene_name": "", "position": 1259 }, { "uniprot_canonical_ac": "Q1WIM2-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q1WIM2/annotated", "id": "Q1WIM2", 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} ], "protein_name": "Neuroplastin", "gene_name": "", "position": 196 }, { "uniprot_canonical_ac": "P01830-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01830/annotated", "id": "P01830", "database": "UniCarbKB" } ], "protein_name": "Thy-1 membrane glycoprotein", "gene_name": "", "position": 93 } ], "mass_pme": 2191.12, "inchi_key": "", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7897", "id": "7897", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, 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], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q766D5-1", "gene": "B4galnt4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG484", "id": "GOG484", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14080", "id": "14080", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3109", "id": "3109", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25464", "id": "25464", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91856517", "id": "CID91856517", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252289556", "id": "SID252289556", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1959", "id": "1959", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3794.91, "inchi_key": "FUJLXTYWNPYLMY-OVFPFQILSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N69", "parentid": "N29", "name": "N-glycan_a-D-Neup5Ac_69" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-6DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C117H191N9O84/c1-28-64(152)80(168)83(171)106(186-28)183-26-54-91(75(163)58(100(175)187-54)121-32(5)140)199-103-61(124-35(8)143)78(166)89(49(22-135)192-103)200-107-84(172)95(203-111-99(81(169)68(156)44(17-130)190-111)205-105-62(125-36(9)144)77(165)87(48(21-134)193-105)198-102-59(122-33(6)141)74(162)69(157)53(195-102)27-185-115(112(176)177)11-38(146)55(118-29(2)137)92(206-115)65(153)41(149)14-127)73(161)52(196-107)25-184-110-98(204-104-63(126-37(10)145)79(167)90(50(23-136)194-104)202-109-86(174)97(72(160)46(19-132)189-109)210-117(114(180)181)13-40(148)57(120-31(4)139)94(208-117)67(155)43(151)16-129)82(170)70(158)51(197-110)24-182-101-60(123-34(7)142)76(164)88(47(20-133)191-101)201-108-85(173)96(71(159)45(18-131)188-108)209-116(113(178)179)12-39(147)56(119-30(3)138)93(207-116)66(154)42(150)15-128/h28,38-111,127-136,146-175H,11-27H2,1-10H3,(H,118,137)(H,119,138)(H,120,139)(H,121,140)(H,122,141)(H,123,142)(H,124,143)(H,125,144)(H,126,145)(H,176,177)(H,178,179)(H,180,181)/t28-,38-,39-,40-,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69-,70+,71-,72-,73+,74+,75+,76+,77+,78+,79+,80+,81-,82-,83-,84-,85+,86+,87+,88+,89+,90+,91+,92+,93+,94+,95-,96-,97-,98-,99-,100+,101+,102-,103-,104-,105-,106+,107-,108-,109-,110-,111+,115+,116-,117-/m0/s1" }, "G50353PP": { "glytoucan_ac": "G50353PP", "mass": 2514.9, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->?)]-beta-D-GlcpNAc-(1->]", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-6-3-1-5-6-4/a4-b1_a6-m1_b4-c1_d2-e1_e4-g1_g6-h2_i2-j1_j4-k1_k6-l2_c?-d1_c?-i1_e?-f1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1333", "id": "1333", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2595", "id": "2595", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 } ], "mass_pme": 3117.57, "inchi_key": "", "publication": [ { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": 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275 } ], "mass_pme": 4564.28, "inchi_key": "MMEHFXQGDWJEDG-YHXDWAKOSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1537", "id": "1537", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1537", "id": "1537", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "The carbohydrate moiety of human 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}, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1072", "id": "1072", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/3375", "id": "3375", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07602-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07602/annotated", "id": "P07602", "database": "UniCarbKB" } ], "protein_name": "Prosaposin", "gene_name": "PSAP", "position": 215 } ], "mass_pme": 2466.26, "inchi_key": "", "publication": [ { "title": "Structure of the asparagine-linked sugar chains of porcine kidney and human urine cerebroside sulfate activator protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11180632", "journal": "Journal of mass spectrometry : JMS", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3375", "id": "3375", "database": "UniCarbKB" } ], "authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3375", "id": "3375", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3375", "id": "3375", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, 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glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7626", "id": "7626", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7626", "id": "7626", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7626", "id": "7626", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G57955DP": { "glytoucan_ac": "G57955DP", "mass": 3025.07, "iupac": 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"protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", 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"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2712", "id": "2712", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10889", "id": "G10889", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91860368", "id": "CID91860368", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252294152", "id": "SID252294152", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1531", "id": "1531", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3753.88, "inchi_key": "SHAWNFGACBQGGI-UXWXGXNFSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1531", "id": "1531", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": 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"alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,21,20/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-5-3-1-4-5-1-6-4-1-4-5-6/a4-b1_a6-u1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m3-n2_o3-p1_o4-q1_q3-r1_r4-s1_s3-t2", "glycoct": 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"count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 21, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G04775TV": { "glytoucan_ac": "G04775TV", "mass": 2662.97, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,15,14/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-6-5-4-2-6-5-2-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g3-h1_g4-i1_j2-k1_j6-n1_k3-l1_k4-m1_n4-o1", "glycoct": 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"residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G31135WM": { "glytoucan_ac": "G31135WM", "mass": 591.2, "iupac": "alpha-D-Neup-(2->3)-beta-D-Galp-(1->4)-beta-D-Glcp(1->", "wurcs": "WURCS=2.0/3,3,2/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*N]/1-2-3/a4-b1_b3-c2", "glycoct": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+36178", "id": "36178", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36179", "id": "36179", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36385", "id": "36385", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+6051", "id": "6051", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=605", "id": "605", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=760", "id": "760", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=776", "id": "776", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=8170", "id": "8170", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID56836112", "id": "CID56836112", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296891", "id": "SID252296891", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 787.42, "inchi_key": "OOPUZBSIELXNQR-XFWRKQOBSA-N", "publication": [], "smiles_isomeric": "C1[C@@H]([C@H]([C@@H](O[C@]1(C(=O)O)O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)O)O)CO)CO)O)[C@@H]([C@@H](CO)O)O)N)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 1, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 0, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [], "inchi": 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"mass_pme": 2827.44, "inchi_key": "ZCNSCTFHLSGIRG-AQOZWEAXSA-N", "publication": [ { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1609", "id": "1609", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1609", "id": "1609", "database": "UniCarbKB" } ], "authors": 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"InChI=1S/C76H128N2O61/c1-15(89)77-29-41(101)56(25(11-87)119-65(29)116)131-66-30(78-16(2)90)42(102)57(26(12-88)128-66)132-74-55(115)62(137-75-64(47(107)35(95)20(6-82)126-75)139-76-63(46(106)34(94)21(7-83)127-76)138-73-54(114)60(38(98)24(10-86)125-73)135-71-50(110)45(105)33(93)19(5-81)123-71)40(100)28(130-74)14-118-68-52(112)61(136-72-53(113)59(37(97)23(9-85)124-72)134-70-49(109)44(104)32(92)18(4-80)122-70)39(99)27(129-68)13-117-67-51(111)58(36(96)22(8-84)120-67)133-69-48(108)43(103)31(91)17(3-79)121-69/h17-76,79-88,91-116H,3-14H2,1-2H3,(H,77,89)(H,78,90)/t17-,18-,19-,20-,21-,22-,23-,24-,25-,26-,27-,28-,29-,30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43+,44+,45+,46+,47+,48+,49+,50-,51+,52+,53+,54+,55+,56-,57-,58+,59+,60+,61+,62+,63+,64+,65-,66+,67+,68+,69-,70-,71-,72-,73-,74+,75-,76-/m1/s1" }, "G90789YQ": { "glytoucan_ac": "G90789YQ", "mass": 3390.2, "iupac": "?-D-NeupAc-(2->?),?-D-NeupAc-(2->?),?-D-NeupAc-(2->?),?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,17,16/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][a1221m-1a_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-4-5-4-5-3-4-5-4-5-6-7-7-7/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d?-e1_d?-g1_e?-f1_g?-h1_i?-j1_i?-l1_j?-k1_l?-m1_o2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}_p2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}_q2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:x-dglc-HEX-1:5\\n15b:x-dgal-HEX-1:5\\n16s:n-acetyl\\n17b:x-dglc-HEX-1:5\\n18b:x-dgal-HEX-1:5\\n19s:n-acetyl\\n20b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(6+1)13d\\n13:13o(-1+1)14d\\n14:14o(-1+1)15d\\n15:14d(2+1)16n\\n16:13o(-1+1)17d\\n17:17o(-1+1)18d\\n18:17d(2+1)19n\\n19:1o(6+1)20d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17|18|20\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n21b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n20:21d(5+1)22n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17|18|20\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n23b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n24s:n-acetyl\\nLIN\\n21:23d(5+1)24n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17|18|20\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n25b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n26s:n-acetyl\\nLIN\\n22:25d(5+1)26n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7742", "id": "7742", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7742", "id": "7742", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01225-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01225/annotated", "id": "P01225", "database": "UniCarbKB" } ], "protein_name": "Follitropin subunit beta", "gene_name": "FSHB", "position": 25 } ], "mass_pme": 4203.11, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G20877ZV": { "glytoucan_ac": "G20877ZV", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,18,17/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m6-n2_o4-p1_p6-q2", "glycoct": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G20877ZV", "id": "G20877ZV", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44713_D000", "id": "carbNlink_44713_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=21499", "id": "21499", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G06349", "id": "G06349", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853965", "id": "CID91853965", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286477", "id": "SID252286477", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "DFZSSAHVRKOWPI-NNDMKTKVSA-N", "publication": [], "smiles_isomeric": 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"N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": 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"gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O54905-1", "gene": "B3galt2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q766D5-1", "gene": "B4galnt4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2847", "id": "2847", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2159", "id": "2159", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 483 }, { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 152 }, { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 2752.41, "inchi_key": "", "publication": [ { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2159", "id": "2159", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2159", "id": "2159", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2159", "id": "2159", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { 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"count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": "" }, "G28003YJ": { "glytoucan_ac": "G28003YJ", "mass": 2808.01, "iupac": "?-L-Fucp-(1->?),?-D-NeupAc-(2->?),?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:x-dglc-HEX-1:5\\n15b:x-dgal-HEX-1:5\\n16s:n-acetyl\\n17b:x-dglc-HEX-1:5\\n18b:x-dgal-HEX-1:5\\n19s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(6+1)13d\\n13:13o(-1+1)14d\\n14:14o(-1+1)15d\\n15:14d(2+1)16n\\n16:13o(-1+1)17d\\n17:17o(-1+1)18d\\n18:17d(2+1)19n\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17|18\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n20b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n21s:n-acetyl\\nLIN\\n19:20d(5+1)21n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17|18\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n22b:x-lgal-HEX-1:5|6:d", "species": [ { "evidence": [ { "url": 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"gene_name": "HP", "position": 241 } ], "mass_pme": 3480.76, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7799", "id": "7799", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7799", "id": "7799", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7799", "id": "7799", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core 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{ "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24089", "id": "24089", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10961", "id": "G10961", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859504", "id": "CID91859504", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252293111", "id": "SID252293111", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2027", "id": "2027", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 2973.49, "inchi_key": "XDQREEAEMPPSLZ-URFCLMOUSA-N", "publication": [ { "title": "The glycosylation of Bowes melanoma tissue plasminogen 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"Science (New York, N.Y.)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Schietinger A, Philip M, Yoshida BA, Azadi P, Liu H, Meredith SC, Schreiber H", "date": "2006", "pmid": "17038624" }, { "title": "Differential binding to glycotopes among the layers of three mammalian retinal neurons by man-containing N-linked glycan, T(alpha) (Galbeta1-3GalNAcalpha1-), Tn (GalNAcalpha1-Ser/Thr) and I (beta)/II (beta) (Galbeta1-3/4GlcNAcbeta-) reactive lectins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16770733", "journal": "Neurochemical research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Wu WC, Lai CC, Liu JH, Singh T, Li LM, Peumans WJ, Van Damme EJ, Wu AM", "date": "2006", "pmid": "16770733" }, { "title": "Expression of Vicia villosa agglutinin (VVA)-binding glycoprotein in primary breast cancer cells in relation to lymphatic metastasis: is atypical MUC1 bearing Tn antigen a receptor of VVA?", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16752227", "journal": "Breast cancer research and treatment", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Kawaguchi T, Takazawa H, Imai S, Morimoto J, Watanabe T, Kanno M, Igarashi S", "date": "2006", "pmid": "16752227" }, { "title": "Interference with O-glycosylation in RMA lymphoma cells leads to a reduced in vivo growth of the tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16615117", "journal": "International journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Chen L, Sundback J, Olofsson S, Jondal M", "date": "2006", "pmid": "16615117" }, { "title": "Isolation and characterisation of a Salvia bogotensis seed lectin specific for the Tn antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16413042", "journal": "Phytochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Vega N, Perez G", "date": "2006", "pmid": "16413042" }, { "title": "Elucidation of binding specificity of Jacalin toward O-glycosylated peptides: quantitative analysis by frontal affinity chromatography.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16177266", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Tachibana K, Nakamura S, Wang H, Iwasaki H, Tachibana K, Maebara K, Cheng L, Hirabayashi J, Narimatsu H", "date": "2006", "pmid": "16177266" }, { "title": "Study of the expression of Tn antigen in different types of human breast cancer cells using VVA-B4 lectin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/16391846", "journal": "Oncology reports", "evidence": [ 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Navarrete H, Osinaga E", "date": "2005", "pmid": "15944793" }, { "title": "Lectinochemical studies on the glyco-recognition factors of a Tn (GalNAcalpha1-->Ser/Thr) specific lectin isolated from the seeds of Salvia sclarea.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/15864748", "journal": "Journal of biomedical science", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Wu AM", "date": "2005", "pmid": "15864748" }, { "title": "Further characterization of the binding properties of two monoclonal antibodies recognizing human Tn red blood cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/15864747", "journal": "Journal of biomedical science", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Wua AM, Wub JH, Kuoa HW, Herpa A", "date": "2005", "pmid": "15864747" }, { "title": "Polyvalent GalNAcalpha1-->Ser/Thr (Tn) and 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biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Yoshida T, Tsuruta Y, Iwasaki M, Yamane S, Ochi T, Suzuki R", "date": "2003", "pmid": "12761161" }, { "title": "Mucin-type O-glycosylation in Fasciola hepatica: characterisation of carcinoma-associated Tn and sialyl-Tn antigens and evaluation of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase activity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12547345", "journal": "International journal for parasitology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Freire T, Casaravilla C, Carmona C, Osinaga E", "date": "2003", "pmid": "12547345" }, { "title": "Biochemical characterization of soluble Tn glycoproteins from malignant effusions of patients with carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12883744", "journal": "Oncology 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Ho I, Maklansky J, Chen A, Werther JL, Reddish M, Longenecker BM, Sigurdson E, Iishi S, Zhang JY, Itzkowitz SH", "date": "2001", "pmid": "12820721" }, { "title": "MUC1 mucin and carbohydrate associated antigens as tumor markers in head and neck squamous cell carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11882908", "journal": "Pathology oncology research : POR", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Croce MV, Rabassa ME, Price MR, Segal-Eiras A", "date": "2001", "pmid": "11882908" }, { "title": "Immunohistochemical expression of T, Tn and sialyl-Tn antigens and clinical outcome in human breast carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11396208", "journal": "Anticancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Imai J, Ghazizadeh M, Naito Z, Asano G", "date": "2001", "pmid": "11396208" }, { "title": "Developmental expression of a unique carbohydrate antigen, Tn antigen, in mouse central nervous tissues.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11550228", "journal": "Journal of neuroscience research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Akita K, Fushiki S, Fujimoto T, Inoue M, Oguri K, Okayama M, Yamashina I, Nakada H", "date": "2001", "pmid": "11550228" }, { "title": "Expression of sialyl-Tn antigen in breast cancer cells transfected with the human CMP-Neu5Ac: GalNAc alpha2,6-sialyltransferase (ST6GalNac I) cDNA.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12820722", "journal": "Glycoconjugate journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Julien S, Krzewinski-Recchi MA, Harduin-Lepers A, Gouyer V, Huet G, Le Bourhis X, Delannoy P", "date": "2001", "pmid": "12820722" }, { "title": "O-glycosylation in Echinococcus granulosus: identification and characterization of the carcinoma-associated Tn antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11465993", "journal": "Experimental parasitology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Alvarez Errico D, Medeiros A, Miguez M, Casaravilla C, Malgor R, Carmona C, Nieto A, Osinaga E", "date": "2001", "pmid": "11465993" }, { "title": "Lymph node metastasis-related carbohydrate epitopes of gastric cancer with submucosal invasion.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11193738", "journal": "Surgery today", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Takano Y, Teranishi Y, Terashima S, Motoki R, Kawaguchi T", "date": "2000", "pmid": "11193738" }, { "title": "Identification and characterization of different subpopulations in a human lung adenocarcinoma cell line (A549).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10491017", "journal": "Pathology oncology research : POR", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Croce MV, Colussi AG, Price MR, Segal-Eiras A", "date": "1999", "pmid": "10491017" }, { "title": "Tn-syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10571017", "journal": "Biochimica et biophysica acta", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Berger EG", "date": "1999", "pmid": "10571017" }, { "title": "Expression of sialyl-Tn, Tn and T antigens in primary liver cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10365852", "journal": "Pathology international", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Sasaki M, Yamato T, Nakanuma Y", "date": "1999", "pmid": "10365852" }, { "title": "Repressed beta-1,3-galactosyltransferase in the Tn syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9545556", "journal": "Biochimica et biophysica acta", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Felner KM, Dinter A, Cartron JP, Berger EG", "date": "1998", "pmid": "9545556" }, { "title": "Phosphorylation and O-glycosylation sites of human chromogranin A (CGA79-439) from urine of patients with carcinoid tumors.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9852066", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/25", "id": "25", "database": "UniCarbKB" } ], "authors": "Gadroy P, Stridsberg M, Capon C, Michalski JC, Strub JM, Van Dorsselaer A, Aunis D, Metz-Boutigue MH", "date": "1998", "pmid": "9852066" }, { "title": "Immunohistochemical study of Tn, sialosyl-Tn and T antigens in human meningiomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9857245", "journal": "European journal of histochemistry : EJH", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Giuffre G, Vitarelli E, Tuccari G, Barresi G", "date": "1998", "pmid": "9857245" }, { "title": "Immunoreactivities of polyclonal and monoclonal anti-T and anti-Tn antibodies with human carcinoma cells, grown in vitro and in a xenograft model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9212232", "journal": "International journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Avichezer D, Springer GF, Schechter B, Arnon R", "date": "1997", "pmid": "9212232" }, { "title": "Selection of tumor antigens as targets for immune attack using immunohistochemistry: II. 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obstetric investigation", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Ogawa H, Ghazizadeh M, Araki T", "date": "1996", "pmid": "8793500" }, { "title": "Expression of mucin carbohydrate antigens (T, Tn and sialyl Tn) and MUC-1 gene product in intraductal papillary-mucinous neoplasm of the pancreas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8623771", "journal": "American journal of clinical pathology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Terada T, Nakanuma Y", "date": "1996", "pmid": "8623771" }, { "title": "Concurrent immunohistochemical staining of tumor-infiltrating lymphocytes and carcinoma-associated T (Thomsen-Friedenreich)/Tn antigens in human breast carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8609376", "journal": "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Wang BL, Springer GF, Kaufman MW", "date": "1996", "pmid": "8609376" }, { "title": "Distribution of Tn antigen recognized by an anti-Tn monoclonal antibody (MLS128) in normal and malignant tissues of the digestive tract.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7751324", "journal": "Journal of cancer research and clinical oncology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Ohshio G, Imamura T, Imamura M, Yamabe H, Sakahara H, Nakada H, Yamashina I", "date": "1995", "pmid": "7751324" }, { "title": "Radioimmunoimaging of colon cancer xenografts with anti-Tn monoclonal antibody.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7767313", "journal": "Nuclear medicine and biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Yao Z, Sakahara H, Zhang M, Kobayashi H, Nakada H, Yamashina I, Konishi J", "date": "1995", "pmid": "7767313" }, { "title": "Carbohydrate receptor-mediated gene transfer to human T leukaemic cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7827404", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Thurnher M, Wagner E, Clausen H, Mechtler K, Rusconi S, Dinter A, Birnstiel ML, Berger EG, Cotten M", "date": "1994", "pmid": "7827404" }, { "title": "Simple mucins (T, sialosyl-T, Tn and sialosyl-Tn) are not diagnostic for malignant breast lesions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7516636", "journal": "Anticancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Reed W, Bryne M, Clausen H, Dabelsteen E, Nesland JM", "date": "1994", "pmid": "7516636" }, { "title": "Two different glycosyltransferase defects that result in GalNAc alpha-O-peptide (Tn) expression.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7949653", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "King MJ, Chan A, Roe R, Warren BF, Dell A, Morris HR, Bartolo DC, Durdey P, Corfield AP", "date": "1994", "pmid": "7949653" }, { "title": "Tn antigen is expressed on leukosialin from T-lymphoid cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8261467", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Inoue M, Nakada H, Tanaka N, Yamashina I", "date": "1994", "pmid": "8261467" }, { "title": "Coexpression of cancer-associated carbohydrate antigens, Tn and sialyl Tn.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7841802", "journal": "Glycoconjugate journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Nakada H, Inoue M, Tanaka N, Yamashina I", "date": "1994", "pmid": "7841802" }, { "title": "Assignment of O-glycan attachment sites to the hinge-like regions of human lysosomal membrane glycoproteins lamp-1 and lamp-2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8323299", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/25", "id": "25", "database": "UniCarbKB" } ], "authors": "Carlsson SR, Lycksell PO, Fukuda M", "date": "1993", "pmid": "8323299" }, { "title": "Persistent repression of a functional allele can be responsible for galactosyltransferase deficiency in Tn syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7683697", "journal": "The Journal of clinical investigation", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Thurnher M, Rusconi S, Berger EG", "date": "1993", "pmid": "7683697" }, { "title": "Use of O-glycosylation-defective human lymphoid cell lines and flow cytometry to delineate the specificity of Moluccella laevis lectin and monoclonal antibody 5F4 for the Tn antigen (GalNAc alpha 1-O-Ser/Thr).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8370596", "journal": "Immunology letters", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Thurnher M, Clausen H, Sharon N, Berger EG", "date": "1993", "pmid": "8370596" }, { "title": "Epitopic structure of Tn glycophorin A for an anti-Tn antibody (MLS 128).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7681597", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Nakada H, Inoue M, Numata Y, Tanaka N, Funakoshi I, Fukui S, Mellors A, Yamashina I", "date": "1993", "pmid": "7681597" }, { "title": "Application of chemically desialylated and degalactosylated human glycophorin for induction and characterization of anti-Tn monoclonal antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1422133", "journal": "Glycoconjugate journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Duk M, Steuden I, Dus D, Radzikowski C, Lisowska E", "date": "1992", "pmid": "1422133" }, { "title": "Expression of the Tn antigen in myelodysplasia, lymphoma, and leukemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1471247", "journal": "Transfusion", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Roxby DJ, Pfeiffer MB, Morley AA, Kirkland MA", "date": "1992", "pmid": "1471247" }, { "title": "O-linked oligosaccharides of glycophorins A and B in erythrocytes of two individuals with the Tn polyagglutinability syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1421410", "journal": "Blood", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Blumenfeld OO, Lalezari P, Khorshidi M, Puglia K, Fukuda M", "date": "1992", "pmid": "1421410" }, { "title": "Cancer-associated glycoproteins defined by a monoclonal antibody, MLS 128, recognizing the Tn antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1520302", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Nakada H, Inoue M, Numata Y, Tanaka N, Funakoshi I, Fukui S, Yamashina I", "date": "1992", "pmid": "1520302" }, { "title": "Monoclonal antibody 83D4 immunoreactivity in human tissues: cellular distribution and microcytophotometric analysis of immunoprecipitates on tissue sections.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1567169", "journal": "Anticancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Charpin C, Pancino G, Osinaga E, Bonnier P, Lavaut MN, Allasia C, Roseto A", "date": "1992", "pmid": "1567169" }, { "title": "Immunochemical studies on the differential binding properties of two monoclonal antibodies reacting with Tn red cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1847560", "journal": "Transfusion", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "King MJ, Parsons SF, Wu AM, Jones N", "date": "1991", "pmid": "1847560" }, { "title": "Induction of alpha-N-acetylgalactosamine-O-serine/threonine (Tn) antigen-mediated cellular immune response for active immunotherapy in mice.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1997178", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Singhal A, Fohn M, Hakomori S", "date": "1991", "pmid": "1997178" }, { "title": "Blood group and blood-group-related antigens in normal pancreas and pancreas cancer: enhanced expression of precursor type 1, Tn and sialyl-Tn in pancreas cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1988363", "journal": "International journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Schuessler MH, Pintado S, Welt S, Real FX, Xu M, Melamed MR, Lloyd KO, Oettgen HF", "date": "1991", "pmid": "1988363" }, { "title": "Altered O-glycan synthesis in lymphocytes from patients with Wiskott-Aldrich syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2033371", "journal": "The Journal of experimental medicine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/25", "id": "25", "database": "UniCarbKB" } ], "authors": "Piller F, Le Deist F, Weinberg KI, Parkman R, Fukuda M", "date": "1991", "pmid": "2033371" }, { "title": "Biosynthesis of truncated O-glycans in the T cell line Jurkat. 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"https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Itzkowitz SH, Yuan M, Montgomery CK, Kjeldsen T, Takahashi HK, Bigbee WL, Kim YS", "date": "1989", "pmid": "2908846" }, { "title": "Molecular profile, tissue distribution and prognostic evaluation of a human melanoma-carcinoma antigen recognized by the murine monoclonal antibody B1.1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3235849", "journal": "The International journal of biological markers", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Natali PG, Nicotra MR, Nuti M, Bigotti G, Calabro A, Schlom J, Giacomini P", "date": "1988", "pmid": "3235849" }, { "title": "Human T-lymphocyte activation is associated with changes in O-glycan biosynthesis.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2971663", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/25", "id": "25", "database": "UniCarbKB" } ], "authors": "Piller F, Piller V, Fox RI, Fukuda M", "date": "1988", "pmid": "2971663" }, { "title": "Immunoglobulin G3 monoclonal antibody directed to Tn antigen (tumor-associated alpha-N-acetylgalactosaminyl epitope) that does not cross-react with blood group A antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3390832", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Takahashi HK, Metoki R, Hakomori S", "date": "1988", "pmid": "3390832" }, { "title": "Preparation and characterization of monoclonal antibodies directed to the tumor-associated O-linked sialosyl-2----6 alpha-N-acetylgalactosaminyl (sialosyl-Tn) epitope.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2450649", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Kjeldsen T, Clausen H, Hirohashi S, Ogawa T, Iijima H, Hakomori S", "date": "1988", "pmid": "2450649" }, { "title": "Monoclonal antibodies and synthetic tumor-associated glycoconjugates in the study of the expression of Thomsen-Friedenreich-like and Tn-like antigens on human cancers.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3469463", "journal": "Journal of the National Cancer Institute", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": "G57321FI", "database": "GlyTouCan" } ], "authors": "Longenecker BM, Willans DJ, MacLean GD, Selvaraj S, Suresh MR, Noujaim AA", "date": "1987", "pmid": "3469463" }, { "title": "Detection of the Tn antigen in leukaemia using monoclonal anti-Tn antibody and immunohistochemistry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3479188", "journal": "British journal of haematology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G57321FI", "id": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" 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"residue": "neugc", "count": 1, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"https://pubchem.ncbi.nlm.nih.gov/substance/SID252283068", "id": "SID252283068", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/3155", "id": "3155", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P10646-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P10646/annotated", "id": "P10646", "database": "UniCarbKB" } ], "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "position": 195 }, { "uniprot_canonical_ac": "P10646-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P10646/annotated", "id": "P10646", "database": "UniCarbKB" } ], "protein_name": "Tissue factor pathway inhibitor", "gene_name": "TFPI", "position": 145 } ], "mass_pme": 4018.04, "inchi_key": "BAOAWGVTHBEBOW-NIXLTFPDSA-N", "publication": [ { "title": "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8639592", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3155", "id": "3155", "database": "UniCarbKB" } ], "authors": "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "date": "1996", "pmid": "8639592" }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1388166", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3155", "id": "3155", "database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" } ], "smiles_isomeric": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide 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"protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q8BHC9-1", "gene": "Fut11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG516", "id": "GOG516", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14309", "id": "14309", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25752", "id": "25752", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861956", "id": "CID91861956", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296052", "id": "SID252296052", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4003.03, "inchi_key": "JHARGPFNXRLXNT-GFEFXILKSA-N", "publication": [], "smiles_isomeric": 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"rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N41", "parentid": "N2", "name": "N-glycan_a-L-Fucp_41" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N62", "parentid": "N3", "name": "N-glycan_b-D-GlcpNAc_62" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N63", "parentid": "N62", "name": "N-glycan_b-D-Galp_63" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N100", "parentid": "N63", "name": "N-glycan_a-D-Neup5Ac_100" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N99", "parentid": "N59", "name": "N-glycan_a-L-Fucp_99" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 4, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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}, "G86928UZ": { "glytoucan_ac": "G86928UZ", "mass": 1973.73, "iupac": "beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-1-3-1-4-5-4/a4-b1_a6-k1_b4-c1_c3-d1_c4-f1_c6-g1_d2-e1_g2-h1_h3-i1_h4-j1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23820", "id": "23820", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853750", "id": "CID91853750", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286221", "id": "SID252286221", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "MARFWZXGXXUEAC-DTFMWFGQSA-N", "publication": [], "smiles_isomeric": 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{ "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" 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"InChI=1S/C98H161N7O72/c1-23(116)99-45-30(123)8-97(95(149)150,176-79(45)52(127)32(125)10-106)154-21-43-56(131)65(140)69(144)90(165-43)170-75-37(15-111)160-86(49(60(75)135)103-27(5)120)168-78-41(19-115)163-94(83(71(78)146)175-88-51(105-29(7)122)63(138)76(39(17-113)162-88)171-91-70(145)66(141)57(132)44(166-91)22-155-98(96(151)152)9-31(124)46(100-24(2)117)80(177-98)53(128)33(126)11-107)173-81-58(133)42(164-92(72(81)147)172-77-40(18-114)159-85(48(61(77)136)102-26(4)119)167-73-36(14-110)156-84(148)47(59(73)134)101-25(3)118)20-153-93-82(67(142)55(130)35(13-109)158-93)174-87-50(104-28(6)121)62(137)74(38(16-112)161-87)169-89-68(143)64(139)54(129)34(12-108)157-89/h30-94,106-115,123-148H,8-22H2,1-7H3,(H,99,116)(H,100,117)(H,101,118)(H,102,119)(H,103,120)(H,104,121)(H,105,122)(H,149,150)(H,151,152)/t30-,31-,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54-,55+,56-,57-,58+,59+,60+,61+,62+,63+,64-,65-,66-,67-,68+,69+,70+,71-,72-,73+,74+,75+,76+,77+,78+,79+,80+,81-,82-,83-,84+,85-,86-,87-,88-,89-,90-,91-,92-,93-,94+,97+,98+/m0/s1" 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"Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 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"database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13384", "id": "13384", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2228", "id": "2228", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23218", "id": "23218", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91862144", "id": "CID91862144", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296283", "id": "SID252296283", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/7342", "id": "7342", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2507.29, "inchi_key": "PPVOEVRUZGKNRM-JJKPBYHLSA-N", "publication": [], "smiles_isomeric": 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{ "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C78H130N6O55/c1-18-41(98)54(111)57(114)74(122-18)120-17-34-64(51(108)35(68(118)123-34)79-19(2)92)134-72-39(83-23(6)96)52(109)62(30(13-90)128-72)136-76-60(117)65(47(104)33(131-76)16-121-77-66(138-71-38(82-22(5)95)50(107)44(101)27(10-87)126-71)56(113)46(103)32(132-77)15-119-69-36(80-20(3)93)48(105)42(99)25(8-85)124-69)137-78-67(59(116)63(31(14-91)130-78)133-70-37(81-21(4)94)49(106)43(100)26(9-86)125-70)139-73-40(84-24(7)97)53(110)61(29(12-89)129-73)135-75-58(115)55(112)45(102)28(11-88)127-75/h18,25-78,85-91,98-118H,8-17H2,1-7H3,(H,79,92)(H,80,93)(H,81,94)(H,82,95)(H,83,96)(H,84,97)/t18-,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45-,46+,47+,48+,49+,50+,51+,52+,53+,54+,55-,56-,57-,58+,59-,60-,61+,62+,63+,64+,65-,66-,67-,68+,69+,70-,71-,72-,73-,74+,75-,76-,77-,78+/m0/s1" }, "G03921DY": { "glytoucan_ac": "G03921DY", "mass": 2192.81, "iupac": "beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-6-2-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+2069", "id": "2069", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5663", "id": "5663", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23912", "id": "23912", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=8072", "id": "8072", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G03844", "id": "G03844", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858658", "id": "CID91858658", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292105", "id": "SID252292105", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3940.97, "inchi_key": "ABNFVMMIQHDLQM-NHXCNIETSA-N", "publication": [], "smiles_isomeric": 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"detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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"url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4921", "id": "4921", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1220", "id": "1220", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1492", "id": "1492", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 669.36, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [], "inchi": "" }, "G29676WX": { "glytoucan_ac": "G29676WX", 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"P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2435.07, "inchi_key": "IEPFYAVDKRAVEO-GTLGWLBUSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1309", "id": "1309", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1309", "id": "1309", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)OS(=O)(=O)O)O)NC(=O)C)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)OS(=O)(=O)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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[ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 }, { "uniprot_canonical_ac": "P17050-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P17050/annotated", "id": "P17050", "database": "UniCarbKB" } ], "protein_name": "Alpha-N-acetylgalactosaminidase", "gene_name": "NAGA", "position": 177 } ], "mass_pme": 2670.36, "inchi_key": "XOPIJUCCPKKDTH-RENZMZARSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10704524", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "date": "2000", "pmid": "10704524" }, { "title": "Structure of the asparagine-linked sugar chains of porcine kidney and human urine cerebroside sulfate activator protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11180632", "journal": "Journal of mass spectrometry : JMS", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8639592", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "date": "1996", "pmid": "8639592" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "N-linked sugar chain structure of recombinant human lymphotoxin produced by CHO cells: the functional role of carbohydrate as to its lectin-like character and clearance velocity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8323280", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Fukushima K, Watanabe H, Takeo K, Nomura M, Asahi T, Yamashita K", "date": "1993", "pmid": "8323280" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1388166", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1663", "id": "1663", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=87621", "id": "87621", "database": "ChEBI" }, { "url": "xxx/yyy/GOG588", "id": "GOG588", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=33048", "id": "33048", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1155", "id": "1155", "database": "GlyConnect" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91828250", "id": "CID91828250", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295731", "id": "SID252295731", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2869", "id": "2869", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3014.52, "inchi_key": "PISZVBGSNLCQDA-JYFMAXRYSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C)CO)O)O)CO)CO)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": 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"InChI=1S/C84H142N6O61/c1-20(102)85-26(7-91)44(109)65(27(108)8-92)143-76-41(88-23(4)105)53(118)69(36(17-101)138-76)147-82-64(129)71(149-84-73(59(124)49(114)32(13-97)136-84)151-78-43(90-25(6)107)55(120)68(35(16-100)140-78)146-81-63(128)58(123)48(113)31(12-96)135-81)70(148-75-39(86-21(2)103)51(116)45(110)28(9-93)132-75)38(142-82)19-131-83-72(150-77-42(89-24(5)106)54(119)67(34(15-99)139-77)145-80-62(127)57(122)47(112)30(11-95)134-80)60(125)50(115)37(141-83)18-130-74-40(87-22(3)104)52(117)66(33(14-98)137-74)144-79-61(126)56(121)46(111)29(10-94)133-79/h26-84,91-101,108-129H,7-19H2,1-6H3,(H,85,102)(H,86,103)(H,87,104)(H,88,105)(H,89,106)(H,90,107)/t26-,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48-,49+,50+,51+,52+,53+,54+,55+,56-,57-,58-,59-,60-,61+,62+,63+,64-,65+,66+,67+,68+,69+,70+,71+,72-,73-,74+,75-,76-,77-,78-,79-,80-,81-,82-,83-,84+/m0/s1" }, "G20636FS": { "glytoucan_ac": "G20636FS", "mass": 3535.24, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,17,16/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m6-n2_o4-p1_p3-q2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n\\n22:17o(6+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n", 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"name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=36543", "id": "36543", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2659", "id": "2659", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2452.28, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G23934WD": { "glytoucan_ac": "G23934WD", "mass": 1804.66, 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"Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": 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"detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", 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"N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N19", "parentid": "N4", "name": "N-glycan_a-D-Manp_19" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N24", "parentid": "N19", "name": "N-glycan_a-D-Manp_24" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N44", "parentid": "N2", "name": "N-glycan_b-D-Galp_44" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N73", "parentid": "N44", "name": "N-glycan_a-D-Neup5Ac_73" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": 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characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7784", "id": "7784", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7784", "id": "7784", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked 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"id": "2929", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12714", "id": "12714", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24098", "id": "24098", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10977", "id": "G10977", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846189", "id": "CID91846189", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277211", "id": "SID252277211", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2135", "id": "2135", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 3392.71, "inchi_key": "XYGSROVTPFZQJQ-ITLRNRJGSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2135", "id": "2135", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2135", "id": "2135", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2135", "id": "2135", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2135", "id": "2135", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2135", "id": "2135", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": 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"http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4514.18, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5171", "id": "5171", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": 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"protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "xxx/yyy/GOG328", "id": "GOG328", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13548", "id": "13548", "database": 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], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 } ], "mass_pme": 2752.41, "inchi_key": "CQDLDPJYISHWMX-DCJOYKPRSA-N", "publication": [ { "title": "Structural elucidation of a variety of GalNAc-containing N-linked oligosaccharides from human urinary kallidinogenase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8416919", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1153", "id": "1153", "database": "UniCarbKB" } ], "authors": "Tomiya N, Awaya J, Kurono M, Hanzawa H, Shimada I, Arata Y, Yoshida T, Takahashi N", "date": "1993", "pmid": "8416919" } ], "smiles_isomeric": 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"residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[DGalpNAcb1-4DGlcpNAcb1-6]DManpa1-6[DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": 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"rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N36", "parentid": "N10", "name": "N-glycan_b-D-GlcpNAc_36" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N37", "parentid": "N36", "name": "N-glycan_b-D-Galp_37" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 10, "name": "Hexose" }, { "residue": "hexnac", "count": 9, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 20, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", 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"beta-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,12,11/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-5-4-2-5-5-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g1_h2-i1_i4-j1_j3-k1", "glycoct": 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"name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=71995", "id": "71995", "database": "ChEBI" }, { "url": "xxx/yyy/GOG260", "id": "GOG260", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13312", "id": "13312", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/938", "id": "938", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22969", "id": "22969", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11407", "id": "G11407", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID70788976", "id": "CID70788976", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252289412", "id": "SID252289412", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1105", "id": "1105", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 } ], "mass_pme": 2204.12, "inchi_key": "IDNBCPDOXIQLSO-ZESRDZFBSA-N", "publication": [ { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1105", "id": "1105", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1105", "id": "1105", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1105", "id": "1105", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1105", "id": "1105", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" } ], "smiles_isomeric": 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"uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/3180", "id": "3180", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/1927", "id": "1927", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00742-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00742/annotated", "id": "P00742", "database": "UniCarbKB" } ], "protein_name": "Coagulation factor X", "gene_name": "F10", "position": 231 }, { "uniprot_canonical_ac": 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"id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "12", "parentid": "N6", "name": "unassigned" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G94850KK": { "glytoucan_ac": "G94850KK", "mass": 1355.29, "iupac": 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"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09327-1", "gene": "MGAT3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91850332", "id": "CID91850332", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252282145", "id": "SID252282145", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2830.47, "inchi_key": "XEGKPJIUUHWPAY-UGQJXSLMSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O[C@H]7[C@H]([C@@H]([C@@H]([C@@H](O7)C)O)O)O)O)NC(=O)C)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O)O)NC(=O)C)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": 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"attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N54", "parentid": "N6", "name": "N-glycan_a-L-Fucp_54" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": 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"gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1382", "id": "1382", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 5101.56, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2005", "id": "2005", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", 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Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DGalp[3S]b1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G60814ZB": { "glytoucan_ac": "G60814ZB", "mass": 3681.3, 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\n28b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n\\n22:17o(6+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n\\n27:1o(6+1)28d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG568", "id": "GOG568", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14578", "id": "14578", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26108", "id": "26108", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851610", "id": "CID91851610", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283665", "id": "SID252283665", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "WHKUSCYSNGZFTC-JTUQWWSISA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": 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"uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8020", "id": "8020", "database": "CarbBank" }, { "url": "xxx/yyy/GOG43", "id": "GOG43", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2913", "id": "2913", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23729", "id": "23729", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3870", "id": "3870", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G07166", "id": "G07166", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855759", "id": "CID91855759", "database": "PubChem" }, { "url": 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"attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": 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"InChI=1S/C98H161N7O72/c1-23(116)99-45-30(123)8-97(95(149)150,176-79(45)52(127)32(125)10-106)154-21-43-56(131)65(140)69(144)90(165-43)170-75-38(16-112)161-87(50(62(75)137)104-28(6)121)174-82-67(142)55(130)35(13-109)158-94(82)173-81-58(133)42(164-92(72(81)147)172-77-40(18-114)159-85(48(61(77)136)102-26(4)119)167-73-36(14-110)156-84(148)47(59(73)134)101-25(3)118)20-153-93-83(71(146)78(41(19-115)163-93)168-86-49(103-27(5)120)60(135)74(37(15-111)160-86)169-89-68(143)64(139)54(129)34(12-108)157-89)175-88-51(105-29(7)122)63(138)76(39(17-113)162-88)171-91-70(145)66(141)57(132)44(166-91)22-155-98(96(151)152)9-31(124)46(100-24(2)117)80(177-98)53(128)33(126)11-107/h30-94,106-115,123-148H,8-22H2,1-7H3,(H,99,116)(H,100,117)(H,101,118)(H,102,119)(H,103,120)(H,104,121)(H,105,122)(H,149,150)(H,151,152)/t30-,31-,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54-,55+,56-,57-,58+,59+,60+,61+,62+,63+,64-,65-,66-,67-,68+,69+,70+,71-,72-,73+,74+,75+,76+,77+,78+,79+,80+,81-,82-,83-,84+,85-,86-,87-,88-,89-,90-,91-,92-,93-,94+,97+,98+/m0/s1" }, "G18625KA": { "glytoucan_ac": "G18625KA", "mass": 1871.63, "iupac": "alpha-D-NeupAc-(2->8)-alpha-D-NeupAc-(2->3)[alpha-D-NeupAc-(2->8)-alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)-beta-D-GalpNAc-(1->4)]-beta-D-Galp-(1->4)-beta-D-Glcp(1->", "wurcs": "WURCS=2.0/4,8,7/[a2122h-1b_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-3-4-2-3-3/a4-b1_b3-c2_b4-e1_c8-d2_e3-f1_f3-g2_g8-h2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2b:b-dgal-HEX-1:5\\n3b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n4s:n-acetyl\\n5b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n6s:n-acetyl\\n7b:b-dgal-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n13s:n-acetyl\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+2)3d\\n3:3d(5+1)4n\\n4:3o(8+2)5d\\n5:5d(5+1)6n\\n6:2o(4+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:10o(8+2)12d\\n12:12d(5+1)13n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G18625KA", "id": "G18625KA", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" }, { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G18625KA", "id": "G18625KA", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "http://csdb.glycoscience.ru/bacterial/core/search_id.php?mode=record&id_list=103669", "id": "103669", "database": "BCSDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11390", "id": "11390", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12993", "id": "12993", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14415", "id": "14415", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14456", "id": "14456", 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(4+1)7d\\n7:7d(2+1)8n\\n8:5o(6+1)9d\\n9:1o(6+1)10d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n11b:x-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:a-lgal-HEX-1:5|6:d\\n14b:b-dgal-HEX-1:5\\nLIN\\n10:11d(2+1)12n\\n11:11o(3+1)13d\\n12:11o(4+1)14d\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n15b:x-dglc-HEX-1:5\\n16b:x-dgal-HEX-1:5\\n17s:n-acetyl\\nLIN\\n13:15o(-1+1)16d\\n14:15d(2+1)17n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n18b:x-dglc-HEX-1:5\\n19s:n-acetyl\\nLIN\\n15:18d(2+1)19n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7856", "id": "7856", "database": "UniCarbKB" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7856", "id": "7856", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 196 }, { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 180 } ], "mass_pme": 2885.48, 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:a-lgal-HEX-1:5|6:d\\n4b:b-dglc-HEX-1:5\\n5s:n-acetyl\\n6b:b-dman-HEX-1:5\\n7b:b-dxyl-PEN-1:4\\n8b:a-dman-HEX-1:5\\n9b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:1o(4+1)4d\\n4:4d(2+1)5n\\n5:4o(4+1)6d\\n6:6o(2+1)7d\\n7:6o(3+1)8d\\n8:6o(6+1)9d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1027", "id": "1027", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", 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"attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N40", "parentid": "NA", "name": "N-glycan_a-L-Fucp_40" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE43", "parentid": "NC", "name": "N-glycan_b-D-Xylf_E43" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 1, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DXylfb1-2[DManpa1-3][DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-3]DGlcpNAcb1-", "number_monosaccharides": 7, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "InChI=1S/C45H76N2O34/c1-10-21(55)27(61)32(66)42(70-10)79-36-20(47-12(3)54)39(68)71-17(8-52)35(36)78-40-19(46-11(2)53)26(60)34(16(7-51)75-40)77-45-38(81-43-30(64)24(58)15(6-50)74-43)37(80-44-33(67)29(63)23(57)14(5-49)73-44)25(59)18(76-45)9-69-41-31(65)28(62)22(56)13(4-48)72-41/h10,13-45,48-52,55-68H,4-9H2,1-3H3,(H,46,53)(H,47,54)/t10-,13+,14+,15+,16+,17+,18+,19+,20+,21+,22+,23+,24-,25+,26+,27+,28-,29-,30+,31-,32-,33-,34+,35+,36+,37-,38-,39+,40-,41-,42-,43-,44+,45-/m0/s1" }, "G22686TA": { "glytoucan_ac": "G22686TA", "mass": 2881.03, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1_m3-n2", "glycoct": 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"classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27282", "id": "27282", "database": "CarbBank" }, { "url": "xxx/yyy/GOG197", "id": "GOG197", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8138", "id": "8138", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1595", "id": "1595", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12702", "id": "12702", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24088", "id": "24088", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10960", "id": "G10960", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846663", "id": "CID91846663", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277793", "id": "SID252277793", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2025", "id": "2025", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 2973.49, "inchi_key": "MXRYLBUKDHLSBU-URFCLMOUSA-N", "publication": [ { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2025", "id": "2025", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2025", "id": "2025", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2025", "id": "2025", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", 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"url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4203.11, "inchi_key": "IVFWALNGPXAYFR-KPYQADQFSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1751", "id": "1751", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1751", "id": "1751", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1751", "id": "1751", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1751", "id": "1751", "database": "UniCarbKB" } ], "authors": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7947", "id": "7947", "database": "UniCarbKB" }, { "url": "http://www.unicarbkb.org/structure/8243", "id": "8243", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "Q63345-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q63345/annotated", "id": "Q63345", "database": "UniCarbKB" } ], "protein_name": "Myelin-oligodendrocyte glycoprotein", "gene_name": "", "position": 58 } ], "mass_pme": 2425.24, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00028MO", "name": "N-Glycan high mannose" }, { "id": "G00029MO", "name": "N-Glycan hybrid" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G47011KD": { "glytoucan_ac": "G47011KD", "mass": 1722.65, "iupac": "beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-GlcpNAc-(1->4)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/3,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-1-1-1-3-1/a4-b1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_d4-f1_h4-i1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dglc-HEX-1:5\\n10s:n-acetyl\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:6o(4+1)9d\\n9:9d(2+1)10n\\n10:5o(4+1)11d\\n11:11d(2+1)12n\\n12:5o(6+1)13d\\n13:13o(4+1)14d\\n14:14d(2+1)15n", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { 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"gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-4DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 9, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" } ], "inchi": 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"alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h4-l1_i4-j1_j3-k2_l4-m1_m6-n2", "glycoct": 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"title": "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/6424", "id": "6424", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, 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carboxypeptidase 2", "gene_name": "", "position": 615 } ], "mass_pme": 2017.04, "inchi_key": "ATBRMGSBZUFAPJ-UNNYNMINSA-N", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1493", "id": "1493", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1493", "id": "1493", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1493", "id": "1493", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Carbohydrate structure of human pancreatic elastase 1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1898343", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1493", "id": "1493", "database": "UniCarbKB" } ], "authors": "Wendorf P, Linder D, Sziegoleit A, Geyer R", "date": "1991", "pmid": "1898343" }, { "title": "The polypeptide of 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Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalp[3S]b1-4DGlcpNAcb1-2[DGalp[3S]b1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G94734OT": { "glytoucan_ac": "G94734OT", "mass": 1396.49, 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"rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGalpNAcb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": 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"url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14063", "id": "14063", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25435", "id": "25435", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853826", "id": "CID91853826", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286308", "id": "SID252286308", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2857.45, "inchi_key": "OUUXTRAPBIQIBI-FPRFITIHSA-N", "publication": [], "smiles_isomeric": 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"N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" } ], "composition": [ { 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"protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 } ], "mass_pme": 2000.02, "inchi_key": "XMOZJNZWPYHNNO-TXQXYVKMSA-N", "publication": [ { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1103", "id": "1103", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. 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one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1103", "id": "1103", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O)O)CO)O)O)CO)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\nUND\\nUND1:100.0:100.0\\nParentIDs:9|12|16\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G47299BP", "id": "G47299BP", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21350_P", "id": "carbNlink_21350_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28928", "id": "28928", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2857.45, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G31606TH": { "glytoucan_ac": "G31606TH", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,18,17/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\n28b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:17o(6+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n\\n27:1o(6+1)28d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G31606TH", "id": "G31606TH", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44712_D000", "id": "carbNlink_44712_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=21496", "id": "21496", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G06346", "id": "G06346", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858299", "id": "CID91858299", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291668", "id": "SID252291668", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "GSJBMEWCAVYZKB-IQMLTEMHSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H](C(O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C140H228N10O102/c1-33-75(182)92(199)95(202)125(222-33)219-31-64-108(86(193)69(119(209)223-64)145-38(6)168)237-122-72(148-41(9)171)89(196)104(57(25-160)229-122)239-127-98(205)113(243-132-118(245-124-74(150-43(11)173)91(198)106(59(27-162)231-124)242-130-101(208)116(84(191)54(22-157)226-130)252-140(136(216)217)15-47(177)68(144-37(5)167)112(249-140)79(186)51(181)19-154)97(204)107(60(28-163)232-132)236-121-71(147-40(8)170)88(195)103(56(24-159)228-121)238-126-96(203)93(200)80(187)63(234-126)32-221-137(133(210)211)12-44(174)65(141-34(2)164)109(246-137)76(183)48(178)16-151)85(192)62(233-127)30-220-131-117(244-123-73(149-42(10)172)90(197)105(58(26-161)230-123)241-129-100(207)115(83(190)53(21-156)225-129)251-139(135(214)215)14-46(176)67(143-36(4)166)111(248-139)78(185)50(180)18-153)94(201)81(188)61(235-131)29-218-120-70(146-39(7)169)87(194)102(55(23-158)227-120)240-128-99(206)114(82(189)52(20-155)224-128)250-138(134(212)213)13-45(175)66(142-35(3)165)110(247-138)77(184)49(179)17-152/h33,44-132,151-163,174-209H,12-32H2,1-11H3,(H,141,164)(H,142,165)(H,143,166)(H,144,167)(H,145,168)(H,146,169)(H,147,170)(H,148,171)(H,149,172)(H,150,173)(H,210,211)(H,212,213)(H,214,215)(H,216,217)/t33-,44-,45-,46-,47-,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79+,80-,81+,82-,83-,84-,85+,86+,87+,88+,89+,90+,91+,92+,93-,94-,95-,96+,97-,98-,99+,100+,101+,102+,103+,104+,105+,106+,107+,108+,109+,110+,111+,112+,113-,114-,115-,116-,117-,118-,119?,120+,121-,122-,123-,124-,125+,126-,127-,128-,129-,130-,131-,132+,137+,138-,139-,140-/m0/s1" }, "G93141AZ": { "glytoucan_ac": "G93141AZ", "mass": 1989.73, "iupac": "beta-D-Galp-(1->4),beta-D-Galp-(1->4),beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-1-3-1-4-5-5/a4-b1_a6-i1_b4-c1_c3-d1_c6-g1_d2-e1_d4-f1_g2-h1_j1-a4|b4|c4|d4|e4|f4|g4|h4|i4}_k1-a4|b4|c4|d4|e4|f4|g4|h4|i4}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dglc-HEX-1:5\\n10s:n-acetyl\\n11b:a-dman-HEX-1:5\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:6o(4+1)9d\\n9:9d(2+1)10n\\n10:5o(6+1)11d\\n11:11o(2+1)12d\\n12:12d(2+1)13n\\n13:1o(6+1)14d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|11|12|14\\nSubtreeLinkageID1:o(4+1)d\\nRES\\n15b:b-dgal-HEX-1:5\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|11|12|14\\nSubtreeLinkageID1:o(4+1)d\\nRES\\n16b:b-dgal-HEX-1:5", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/3345", "id": "3345", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": 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"N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N54", "parentid": "N6", "name": "N-glycan_a-L-Fucp_54" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N104", "parentid": "N6", "name": "N-glycan_a-D-GalpNAc_104" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpNAca1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00066MO", "name": "Blood group A" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": 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"Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "O09160-1", "gene": "Fut1", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 1" }, { "uniprot_canonical_ac": "Q9JL27-1", "gene": "Fut2", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 2" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97353-1", "gene": "Sec1", 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"id": "P19835", "database": "UniCarbKB" } ], "protein_name": "Bile salt-activated lipase", "gene_name": "CEL", "position": 207 } ], "mass_pme": 2017.04, "inchi_key": "UONKIDOTSCXBSI-HCTYFURCSA-N", "publication": [ { "title": "Characterization of N- and O-linked glycosylation of recombinant human bile salt-stimulated lipase secreted by Pichia pastoris.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/14693913", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2979", "id": "2979", "database": "UniCarbKB" } ], "authors": "Trimble RB, Lubowski C, Hauer CR 3rd, Stack R, McNaughton L, Gemmill TR, Kumar SA", "date": "2004", "pmid": "14693913" }, { "title": "Structural characterization of the N-linked oligosaccharides in bile salt-stimulated lipase originated from human breast milk.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10024660", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2979", "id": "2979", "database": 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"id": "P70627", "database": "UniCarbKB" } ], "protein_name": "Glutamate carboxypeptidase 2", "gene_name": "", "position": 615 } ], "mass_pme": 2436.25, "inchi_key": "", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7906", "id": "7906", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": 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"alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5-1-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"G00032MO", "name": "O-Glycan core 1 fuzzy" }, { "id": "G00034MO", "name": "O-Glycan core 2 fuzzy" }, { "id": "G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G99808VS": { "glytoucan_ac": "G99808VS", "mass": 2391.65, "iupac": "beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_3*OSO/3=O/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-3-1-4-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_j4-k1", "glycoct": 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"complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/784", "id": "784", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5165", "id": "5165", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2868.18, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5165", "id": "5165", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5165", "id": "5165", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalp[3S]b1-4DGlcpNAcb1-2[DGalp[3S]b1-4DGlcpNAcb1-4]DManpa1-3[DGalp[3S]b1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" } ], "inchi": "" }, "G82753OZ": { "glytoucan_ac": "G82753OZ", "mass": 1973.73, "iupac": "beta-D-Galp-(1->4)[alpha-L-Fucp-(1->?)]-beta-D-GlcpNAc-(1->]", "wurcs": 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"database": "UniCarbKB" } ], "protein_name": "Basigin", "gene_name": "", "position": 160 }, { "uniprot_canonical_ac": "P97686-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P97686/annotated", "id": "P97686", "database": "UniCarbKB" } ], "protein_name": "Neuronal cell adhesion molecule", "gene_name": "", "position": 993 }, { "uniprot_canonical_ac": "Q9JJW1-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q9JJW1/annotated", "id": "Q9JJW1", "database": "UniCarbKB" } ], "protein_name": "Tetraspanin-2", "gene_name": "", "position": 139 }, { "uniprot_canonical_ac": "P97546-2", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P97546/annotated", "id": "P97546", "database": "UniCarbKB" } ], "protein_name": "Neuroplastin", "gene_name": "", "position": 196 }, { "uniprot_canonical_ac": "P70627-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P70627/annotated", "id": "P70627", "database": "UniCarbKB" } ], "protein_name": "Glutamate 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"?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?),alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,17,16/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-3-4-5-6-7-5-6-7-5-6-7-5-6/a4-b1_a6-f1_b4-c1_c3-d1_c6-e1_g?-h1_h?-i2_j?-k1_k?-l2_m?-n1_n?-o2_p?-q1_g1-a?|b?|c?|d?|e?|f?}_j1-a?|b?|c?|d?|e?|f?}_m1-a?|b?|c?|d?|e?|f?}_p1-a?|b?|c?|d?|e?|f?}", "glycoct": 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}, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00069MO", "name": "Glycosphingolipid Lacto series" } ], "inchi": "InChI=1S/C48H79N3O37/c1-12(57)49-23-15(60)4-47(45(74)75,86-37(23)26(64)17(62)6-52)78-11-22-30(68)36(25(51-14(3)59)42(82-22)85-39-28(66)19(8-54)80-43(33(39)71)83-35-21(10-56)79-41(73)32(70)31(35)69)84-44-34(72)40(29(67)20(9-55)81-44)88-48(46(76)77)5-16(61)24(50-13(2)58)38(87-48)27(65)18(63)7-53/h15-44,52-56,60-73H,4-11H2,1-3H3,(H,49,57)(H,50,58)(H,51,59)(H,74,75)(H,76,77)/t15-,16-,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27+,28-,29-,30+,31+,32+,33+,34+,35+,36+,37+,38+,39-,40-,41+,42-,43-,44-,47+,48-/m0/s1" }, "G62554JH": { "glytoucan_ac": "G62554JH", "mass": 748.27, "iupac": "beta-D-GlcpNAc-(1->3)[beta-D-GalpNAc-(1->4)]-beta-D-Galp-(1->4)-beta-D-Glcp(1->", "wurcs": "WURCS=2.0/4,4,3/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-4/a4-b1_b3-c1_b4-d1", "glycoct": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+37108", "id": "37108", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2192", "id": "2192", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2814", "id": "2814", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G01188", "id": "G01188", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91850076", "id": "CID91850076", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252281843", "id": "SID252281843", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 944.49, "inchi_key": "", "publication": [ { "title": "Monoclonal antibodies directed to chemically synthesized lactogangliotetraosylceramide, a leukemia-associated antigen having a novel branching structure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3805024", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G62554JH", "id": "G62554JH", "database": "GlyTouCan" } ], "authors": "Shigeta K, Ito Y, Ogawa T, Kirihata Y, Hakomori S, Kannagi R", "date": "1987", "pmid": "3805024" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](O[C@H]1O[C@H]2[C@H](O[C@H]([C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O)O)NC(=O)C)O)O[C@@H]4[C@H](O[C@H]([C@@H]([C@H]4O)O)O)CO)CO)CO)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpNAcb1-3[DGalpNAcb1-4]DGalpb1-4DGlcpb1-", 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erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1991", "id": "1991", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1991", "id": "1991", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1991", "id": "1991", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1991", "id": "1991", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings 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"name": "N-glycan_b-D-Galp_6" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C30H51N3O21/c1-8(37)31-15-21(43)18(40)11(4-34)50-29(15)54-26-17(33-10(3)39)27(47)49-14(20(26)42)7-48-28-16(32-9(2)38)22(44)25(13(6-36)52-28)53-30-24(46)23(45)19(41)12(5-35)51-30/h11-30,34-36,40-47H,4-7H2,1-3H3,(H,31,37)(H,32,38)(H,33,39)/t11-,12-,13-,14-,15-,16-,17-,18-,19+,20+,21-,22-,23+,24-,25-,26-,27+,28-,29+,30+/m1/s1" }, "G09682KX": { "glytoucan_ac": "G09682KX", "mass": 1535.56, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)[alpha-D-NeupAc-(2->6)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)[alpha-D-NeupAc-(2->6)]-D-GalNAc(?->", "wurcs": "WURCS=2.0/4,7,6/[h2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-3-4-4/a3-b1_a6-g2_b4-c1_c3-d1_c6-f2_d4-e1", "glycoct": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16535", "id": "16535", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846713", "id": "CID91846713", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277850", "id": "SID252277850", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1928.0, "inchi_key": "GUNJTQVZTSPBJA-KDINYCHQSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]([C@H](CO)NC(=O)C)[C@H]([C@@H](CO[C@@]4(C[C@@H]([C@H]([C@@H](O4)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)NC(=O)C)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "InChI=1S/C58H97N5O42/c1-16(70)59-21(8-64)45(37(82)26(79)14-94-57(55(90)91)6-22(75)31(60-17(2)71)48(104-57)35(80)24(77)9-65)100-51-33(62-19(4)73)40(85)47(29(13-69)97-51)102-54-44(89)50(39(84)30(99-54)15-95-58(56(92)93)7-23(76)32(61-18(3)72)49(105-58)36(81)25(78)10-66)103-52-34(63-20(5)74)41(86)46(28(12-68)98-52)101-53-43(88)42(87)38(83)27(11-67)96-53/h21-54,64-69,75-89H,6-15H2,1-5H3,(H,59,70)(H,60,71)(H,61,72)(H,62,73)(H,63,74)(H,90,91)(H,92,93)/t21-,22-,23-,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37-,38-,39-,40+,41+,42-,43+,44+,45+,46+,47+,48+,49+,50-,51-,52-,53-,54-,57+,58+/m0/s1" }, "G19127AY": { "glytoucan_ac": "G19127AY", "mass": 1331.49, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,7,6/[u2122h_2*NCC/3=O][a1221m-1a_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-3-5-2/a3-b1_a4-c1_c3-d1_d3-e1_d4-g1_e3-f2", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:a-lgal-HEX-1:5|6:d\\n4b:b-dgal-HEX-1:5\\n5b:b-dglc-HEX-1:5\\n6s:n-acetyl\\n7b:b-dgal-HEX-1:5\\n8b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n9s:n-acetyl\\n10b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:1o(4+1)4d\\n4:4o(3+1)5d\\n5:5d(2+1)6n\\n6:5o(3+1)7d\\n7:7o(3+2)8d\\n8:8d(5+1)9n\\n9:5o(4+1)10d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G19127AY", "id": "G19127AY", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+15269", "id": "15269", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5684", "id": "5684", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=8101", "id": "8101", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1653.85, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00053MO", "name": "Sialyl Lewis A" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G44121LY": { "glytoucan_ac": "G44121LY", "mass": 2442.88, "iupac": "?-D-NeupAc-(2->?),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-4-3-1-4-5-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_j4-k1_m?-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:1o(6+1)17d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|14|16|17\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n18b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n19s:n-acetyl\\nLIN\\n17:18d(5+1)19n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2193", "id": "2193", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1438", "id": "1438", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2193", "id": "2193", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3031.53, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G17473NR": { "glytoucan_ac": "G17473NR", "mass": 2571.92, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-3-1-4-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c4-h1_c6-i1_d2-e1_e4-f1_f3-g2_i2-j1_j4-k1_k3-l2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\n18b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n19s:n-acetyl\\n20b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:5o(4+1)12d\\n12:12d(2+1)13n\\n13:5o(6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(4+1)17d\\n17:17o(3+2)18d\\n18:18d(5+1)19n\\n19:1o(6+1)20d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G17473NR", "id": "G17473NR", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09327-1", "gene": "MGAT3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+25753", "id": "25753", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+44431", "id": "44431", "database": "CarbBank" }, { "url": "xxx/yyy/GOG144", "id": "GOG144", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1795", "id": "1795", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2866", "id": "2866", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2266", "id": "2266", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23653", "id": "23653", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11906", "id": "G11906", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91852934", "id": "CID91852934", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285258", "id": "SID252285258", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2859", "id": "2859", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3188.61, "inchi_key": "MNONKEGNFCVPJQ-HJDQKMEZSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", 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"", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C98H161N7O71/c1-23-52(127)65(140)68(143)89(154-23)152-21-43-75(61(136)47(84(147)155-43)101-26(4)118)165-86-49(103-28(6)120)62(137)74(40(18-113)161-86)168-92-71(146)81(170-94-83(67(142)57(132)37(15-110)160-94)172-88-51(105-30(8)122)64(139)73(42(20-115)163-88)167-91-70(145)80(59(134)39(17-112)158-91)176-98(96(150)151)10-32(124)46(100-25(3)117)78(174-98)54(129)34(126)12-107)76(169-85-48(102-27(5)119)60(135)55(130)35(13-108)156-85)44(164-92)22-153-93-82(66(141)56(131)36(14-109)159-93)171-87-50(104-29(7)121)63(138)72(41(19-114)162-87)166-90-69(144)79(58(133)38(16-111)157-90)175-97(95(148)149)9-31(123)45(99-24(2)116)77(173-97)53(128)33(125)11-106/h23,31-94,106-115,123-147H,9-22H2,1-8H3,(H,99,116)(H,100,117)(H,101,118)(H,102,119)(H,103,120)(H,104,121)(H,105,122)(H,148,149)(H,150,151)/t23-,31-,32-,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58-,59-,60+,61+,62+,63+,64+,65+,66-,67-,68-,69+,70+,71-,72+,73+,74+,75+,76+,77+,78+,79-,80-,81+,82-,83-,84+,85-,86-,87-,88-,89+,90-,91-,92-,93-,94+,97-,98-/m0/s1" 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"RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3|6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(3|6+2)16d\\n16:16d(5+1)17n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G86874HJ", "id": "G86874HJ", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+47184", "id": "47184", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5518", "id": "5518", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9286", "id": "9286", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=14647", "id": "14647", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2785.42, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G90348RI": { "glytoucan_ac": "G90348RI", "mass": 2223.8, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-6-4-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i3-j1_i4-k1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12760", "id": "12760", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1983", "id": "1983", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1984", "id": "1984", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1985", "id": "1985", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1986", "id": "1986", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+20892", "id": "20892", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+25179", "id": "25179", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+32488", "id": "32488", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36012", "id": "36012", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4437", "id": "4437", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5254", "id": "5254", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8205", "id": "8205", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8206", "id": "8206", "database": "CarbBank" }, { "url": "xxx/yyy/GOG125", "id": "GOG125", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=225", "id": "225", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/897", "id": "897", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22992", "id": "22992", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=278", "id": "278", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10719", "id": "G10719", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853858", "id": "CID91853858", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286345", "id": "SID252286345", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1227", "id": "1227", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 156 } ], "mass_pme": 2756.4, "inchi_key": "ZOHFSTGTHSEJRA-TZIWIHCZSA-N", "publication": [ { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1227", "id": "1227", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "Structural determination of two N-linked glycans isolated from recombinant human lactoferrin expressed in BHK cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7774715", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1227", "id": "1227", "database": "UniCarbKB" } ], "authors": "Legrand D, Salmon V, Coddeville B, Benaissa M, Plancke Y, Spik G", "date": "1995", "pmid": "7774715" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. Absence of fucose residues questions the proposed mechanism of hyposideraemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2390069", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1227", "id": "1227", "database": "UniCarbKB" } ], "authors": "Derisbourg P, Wieruszeski JM, Montreuil J, Spik G", "date": "1990", "pmid": "2390069" }, { "title": "Structural study of the sugar chains of human lactoferrin: finding of four novel complex-type asparagine-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7068558", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1227", "id": "1227", "database": "UniCarbKB" } ], "authors": "Matsumoto A, Yoshima H, Takasaki S, Kobata A", "date": "1982", "pmid": "7068558" } ], "smiles_isomeric": 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"residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"evidence": [ { "url": "http://www.unicarbkb.org/structure/7424", "id": "7424", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27502", "id": "27502", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=16129", "id": "16129", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11967", "id": "G11967", "database": "KEGG Glycan" }, { "url": "http://www.unicarbkb.org/structure/7424", "id": "7424", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01222-1", "evidence": 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"Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7424", "id": "7424", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G11356UZ": { "glytoucan_ac": "G11356UZ", "mass": 1305.43, "iupac": 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2009", "id": "2009", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2025", "id": "2025", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2009", "id": "2009", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 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"residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[LFucpa1-3]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[LFucpa1-3]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside 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carbohydrate moiety of human platelet glycocalicin: the structures of the major Asn-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3571205", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1691", "id": "1691", "database": "UniCarbKB" } ], "authors": "Tsuji T, Osawa T", "date": "1987", "pmid": "3571205" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G46185ND": { "glytoucan_ac": "G46185ND", "mass": 2157.7, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_3*OSO/3=O/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-6-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_i4-j1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16s:sulfate\\n17b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(3+1)16n\\n16:1o(6+1)17d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1545", "id": "1545", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13851", "id": "13851", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2274", "id": "2274", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24793", "id": "24793", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845011", "id": "CID91845011", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252275842", "id": "SID252275842", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1545", "id": "1545", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2648.25, "inchi_key": "PCHCFYYNIXVVOU-QKOQJLSTSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1545", "id": "1545", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1545", "id": "1545", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": 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"DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalp[3S]b1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", 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"publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2001", "id": "2001", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2001", "id": "2001", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in 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"classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+28803", "id": "28803", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+31893", "id": "31893", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+34157", "id": "34157", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36603", "id": "36603", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+39706", "id": "39706", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+41181", "id": "41181", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+49612", "id": "49612", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7832", "id": "7832", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=167", "id": "167", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=218", "id": "218", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1801.92, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G88321DT": { "glytoucan_ac": "G88321DT", "mass": 2808.01, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-6-4-3-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h3-i1_h4-j1_k2-l1_k6-n1_l4-m1_n4-o1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P21217-1", "gene": "FUT3", "gene_link": "", "protein_name": "Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3006", "id": "3006", "database": "CarbBank" }, { "url": "xxx/yyy/GOG246", "id": "GOG246", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10461", "id": "10461", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16603", "id": "16603", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24424", "id": "24424", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G04122", "id": "G04122", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848446", "id": "CID91848446", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279941", "id": "SID252279941", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3480.76, "inchi_key": "IWLONRQTTORDJD-KXBSVVKZSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)CO)O[C@@H]4[C@H](O[C@@H]([C@H]([C@H]4O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO[C@@]7(C[C@@H]([C@H]([C@@H](O7)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O[C@H]8[C@@H]([C@H](O[C@H]([C@H]8O)O[C@@H]9[C@H](O[C@H]([C@@H]([C@H]9O)NC(=O)C)O[C@@H]1[C@H](O[C@H]([C@@H]([C@H]1O)NC(=O)C)O)CO)CO)CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)CO)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N18", "parentid": "N7", "name": "N-glycan_a-L-Fucp_18" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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"protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG420", "id": "GOG420", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13872", "id": "13872", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3478", "id": "3478", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24818", "id": "24818", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859616", "id": "CID91859616", "database": "PubChem" }, { "url": 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"publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1997", "id": "1997", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1997", "id": "1997", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1997", "id": "1997", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1997", "id": "1997", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary 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"authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3385", "id": "3385", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3385", "id": "3385", "database": "UniCarbKB" 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"database": "UniCarbKB" } ], "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "position": 51 } ], "mass_pme": 2769.39, "inchi_key": "", "publication": [ { "title": "Characterization of N- and O-linked glycosylation of recombinant human bile salt-stimulated lipase secreted by Pichia pastoris.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/14693913", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2985", "id": "2985", "database": "UniCarbKB" } ], "authors": "Trimble RB, Lubowski C, Hauer CR 3rd, Stack R, McNaughton L, Gemmill TR, Kumar SA", "date": "2004", "pmid": "14693913" }, { "title": "A nucleotide insertion and frameshift cause albumin Kenitra, an extended and O-glycosylated mutant of human serum albumin with two additional disulfide bridges.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11168369", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2985", "id": "2985", "database": "UniCarbKB" } ], "authors": "Minchiotti L, Campagnoli M, Rossi A, Cosulich ME, Monti M, Pucci P, Kragh-Hansen U, Granel B, Disdier P, Weiller PJ, Galliano M", "date": "2001", "pmid": "11168369" }, { "title": "The glycan structure of albumin Redhill, a glycosylated variant of human serum albumin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11738084", "journal": "Biochimica et biophysica acta", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2985", "id": "2985", "database": "UniCarbKB" } ], "authors": "Kragh-Hansen U, Donaldson D, Jensen PH", "date": "2001", "pmid": "11738084" }, { "title": "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2985", "id": "2985", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" }, { "title": "Structural characterization of the N-linked oligosaccharides in bile salt-stimulated lipase originated from human breast milk.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10024660", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2985", "id": "2985", "database": "UniCarbKB" } ], "authors": "Mechref Y, Chen P, Novotny MV", "date": "1999", "pmid": "10024660" }, { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous glycostructure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8202534", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2985", "id": "2985", 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"date": "1985", "pmid": "2416034" }, { "title": "Repetitive A epitope (type 3 chain A) defined by blood group A1-specific monoclonal antibody TH-1: chemical basis of qualitative A1 and A2 distinction.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2579390", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G61459JW", "id": "G61459JW", "database": "GlyTouCan" } ], "authors": "Clausen H, Levery SB, Nudelman E, Tsuchiya S, Hakomori S", "date": "1985", "pmid": "2579390" }, { "title": "Use of monoclonal antibodies for the localization of tissue isoantigens A and B in transitional cell carcinoma of the upper urinary tract.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6827085", "journal": "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G61459JW", "id": "G61459JW", "database": "GlyTouCan" } ], "authors": "Chapman CM, Allhoff EP, Proppe KH, Prout GR Jr", "date": "1983", "pmid": "6827085" }, { "title": "A monoclonal antibody that precipitates the glycoprotein receptor for epidermal growth factor is directed against the human blood group H type 1 antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6309836", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G61459JW", "id": "G61459JW", "database": "GlyTouCan" } ], "authors": "Fredman P, Richert ND, Magnani JL, Willingham MC, Pastan I, Ginsburg V", "date": "1983", "pmid": "6309836" }, { "title": "Two monoclonal anticarbohydrate antibodies directed to glycosphingolipids with a lacto-N-glycosyl type II chain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7287743", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G61459JW", "id": "G61459JW", "database": "GlyTouCan" } ], 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C115H188N8O84/c1-27-61(148)75(162)79(166)103(183-27)179-24-52-90(70(157)56(98(172)184-52)119-31(5)137)196-100-58(121-33(7)139)72(159)87(46(20-131)188-100)199-106-83(170)94(69(156)49(192-106)23-180-108-96(78(165)65(152)42(16-127)186-108)202-101-59(122-34(8)140)74(161)88(47(21-132)189-101)200-107-84(171)95(68(155)43(17-128)185-107)207-115(112(177)178)12-38(144)55(118-30(4)136)93(206-115)64(151)41(147)15-126)201-109-97(203-102-60(123-35(9)141)73(160)86(45(19-130)190-102)198-105-81(168)77(164)67(154)51(194-105)26-182-114(111(175)176)11-37(143)54(117-29(3)135)92(205-114)63(150)40(146)14-125)82(169)89(48(22-133)191-109)195-99-57(120-32(6)138)71(158)85(44(18-129)187-99)197-104-80(167)76(163)66(153)50(193-104)25-181-113(110(173)174)10-36(142)53(116-28(2)134)91(204-113)62(149)39(145)13-124/h27,36-109,124-133,142-172H,10-26H2,1-9H3,(H,116,134)(H,117,135)(H,118,136)(H,119,137)(H,120,138)(H,121,139)(H,122,140)(H,123,141)(H,173,174)(H,175,176)(H,177,178)/t27-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66-,67-,68-,69+,70+,71+,72+,73+,74+,75+,76-,77-,78-,79-,80+,81+,82-,83-,84+,85+,86+,87+,88+,89+,90+,91+,92+,93+,94-,95-,96-,97-,98+,99-,100-,101-,102-,103+,104-,105-,106-,107-,108-,109+,113+,114+,115-/m0/s1" 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"http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21406_P", "id": "carbNlink_21406_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28963", "id": "28963", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2582.31, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G03951JJ": { "glytoucan_ac": "G03951JJ", "mass": 2296.82, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-k1_i4-j1_k4-l1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:b-dglc-HEX-1:5\\n17s:n-acetyl\\n18b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:12o(6+1)16d\\n16:16d(2+1)17n\\n17:16o(4+1)18d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG371", "id": "GOG371", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13707", "id": "13707", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24432", "id": "24432", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851060", "id": "CID91851060", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283023", "id": "SID252283023", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2857.45, "inchi_key": "YZHHFKYNSSIPNK-MFEFVXMTSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C87H144N6O64/c1-20(103)88-39-26(109)7-87(86(133)134,157-71(39)45(111)27(110)8-94)137-19-38-49(115)59(125)64(130)82(147-38)152-69-34(15-101)145-79(44(56(69)122)93-25(6)108)156-74-60(126)48(114)30(11-97)141-85(74)154-72-51(117)37(146-83(65(72)131)153-70-35(16-102)143-77(42(54(70)120)91-23(4)106)149-66-31(12-98)138-75(132)40(52(66)118)89-21(2)104)18-136-84-73(155-78-43(92-24(5)107)55(121)68(33(14-100)144-78)151-81-63(129)58(124)47(113)29(10-96)140-81)61(127)50(116)36(148-84)17-135-76-41(90-22(3)105)53(119)67(32(13-99)142-76)150-80-62(128)57(123)46(112)28(9-95)139-80/h26-85,94-102,109-132H,7-19H2,1-6H3,(H,88,103)(H,89,104)(H,90,105)(H,91,106)(H,92,107)(H,93,108)(H,133,134)/t26-,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46-,47-,48+,49-,50+,51+,52+,53+,54+,55+,56+,57-,58-,59-,60-,61-,62+,63+,64+,65-,66+,67+,68+,69+,70+,71+,72-,73-,74-,75+,76+,77-,78-,79-,80-,81-,82-,83-,84-,85+,87+/m0/s1" }, "G90130AG": { "glytoucan_ac": "G90130AG", "mass": 3247.18, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,18,17/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-1-4-3-1-4-1-4-1-4-5/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_e4-f1_f3-g1_g4-h1_h3-i1_i4-j1_k2-l1_l4-m1_m3-n1_n4-o1_o3-p1_p4-q1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7577", "id": "7577", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "O09164-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/O09164/annotated", "id": "O09164", "database": "UniCarbKB" } ], "protein_name": "Extracellular superoxide dismutase [Cu-Zn]", "gene_name": "Sod3", "position": 121 } ], "mass_pme": 3031.53, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G56147VV": { "glytoucan_ac": "G56147VV", "mass": 3025.07, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n\\n17:12o(6+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:1o(6+1)23d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG97", "id": "GOG97", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14612", "id": "14612", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26142", "id": "26142", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91857912", "id": "CID91857912", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291210", "id": "SID252291210", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3753.88, "inchi_key": "MGRGZQXJANMIBN-QDSQJMGXSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+50831", "id": "50831", "database": "CarbBank" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbSynthe_0063_D000", "id": "carbSynthe_0063_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbSynthe_0605_D000", "id": "carbSynthe_0605_D000", "database": "CFG" }, { "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=62330", "id": "62330", "database": "ChEBI" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=308", "id": "308", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22212", "id": "22212", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22709", "id": "22709", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=365", "id": "365", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7117", "id": "7117", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=9378", "id": "9378", "database": "Glycosciences.de" }, { "url": "https://www.rcsb.org/structure/1hql", "id": "1hql", "database": "PDB" }, { "url": "https://www.rcsb.org/structure/2dvd", "id": "2dvd", "database": "PDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID52939789", "id": "CID52939789", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285815", "id": "SID252285815", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 454.24, "inchi_key": "QIGJYVCQYDKYDW-VZGRRIPQSA-N", "publication": [], "smiles_isomeric": 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"https://glytoucan.org/Structures/Glycans/G79564YR", "id": "G79564YR", "database": "GlyTouCan" } ], "taxid": 10116, "name": "Rattus norvegicus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21411_P", "id": "carbNlink_21411_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28967", "id": "28967", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2088.07, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": 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Determination of glycan primary structures and characterization of a new type of trisialylated diantennary glycan.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1997323", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7924", "id": "7924", "database": "UniCarbKB" } ], "authors": "Spik G, Coddeville B, Strecker G, Montreuil J, Regoeczi E, Chindemi PA, Rudolph JR", "date": "1991", "pmid": "1997323" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" 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"gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", 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"http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 }, { "uniprot_canonical_ac": "P15800-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P15800/annotated", "id": "P15800", "database": "UniCarbKB" } ], "protein_name": "Laminin subunit beta-2", "gene_name": "", "position": 1502 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P00747-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00747/annotated", "id": "P00747", "database": "UniCarbKB" } ], "protein_name": "Plasminogen", "gene_name": "PLG", "position": 308 }, { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "Q9JJW1-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q9JJW1/annotated", "id": "Q9JJW1", "database": "UniCarbKB" } ], "protein_name": "Tetraspanin-2", "gene_name": "", "position": 139 }, { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 } ], "mass_pme": 2582.31, "inchi_key": "QOLZEOWXKBNBLE-CBYKEYACSA-N", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" }, { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Structural determination of two N-linked glycans isolated from recombinant human lactoferrin expressed in BHK cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7774715", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Legrand D, Salmon V, Coddeville B, Benaissa M, Plancke Y, Spik G", "date": "1995", "pmid": "7774715" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1899031", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "1899031" }, { "title": "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2065054", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2065054" }, { "title": "Asparagine-linked oligosaccharide processing in lepidopteran insect cells. Temporal dependence of the nature of the oligosaccharides assembled on asparagine-289 of recombinant human plasminogen produced in baculovirus vector infected Spodoptera frugiperda (IPLB-SF-21AE) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2059624", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2059624" }, { "title": "Oligosaccharide processing in the expression of human plasminogen cDNA by lepidopteran insect (Spodoptera frugiperda) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2386787", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Fraser MJ, Castellino FJ", "date": "1990", "pmid": "2386787" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. Absence of fucose residues questions the proposed mechanism of hyposideraemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2390069", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Derisbourg P, Wieruszeski JM, Montreuil J, Spik G", "date": "1990", "pmid": "2390069" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" }, { "title": "Structural study of the sugar chains of human lactoferrin: finding of four novel complex-type asparagine-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7068558", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1119", "id": "1119", "database": "UniCarbKB" } ], "authors": "Matsumoto A, Yoshima H, Takasaki S, Kobata A", "date": "1982", "pmid": "7068558" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": 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"N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-3DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-3DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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Two novel homologs exhibit broad specificity toward oligosaccharides from proteoglycans, glycoproteins, and glycosphingolipids.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12511570", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Kim BT, Tsuchida K, Lincecum J, Kitagawa H, Bernfield M, Sugahara K", "date": "2003", "pmid": "12511570" }, { "title": "Mice deficient for the HNK-1 sulfotransferase show alterations in synaptic efficacy and spatial learning and memory.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12213450", "journal": "Molecular and cellular neurosciences", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Senn C, Kutsche M, Saghatelyan A, Bosl MR, Lohler J, Bartsch U, Morellini F, Schachner M", "date": "2002", "pmid": "12213450" }, { "title": "HNK-1 sulfotransferase null mice express glucuronyl glycoconjugates and show normal cerebellar granule neuron migration in vivo and in vitro.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12358771", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Chou DK, Schachner M, Jungalwala FB", "date": "2002", "pmid": "12358771" }, { "title": "cDNA cloning, genomic structure and chromosomal mapping of the mouse glucuronyltransferase-S involved in the biosynthesis of the HNK-1 carbohydrate epitope.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12383500", "journal": "Gene", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Imiya K, Ishizaki T, Seiki T, Saito F, Inazawa J, Oka S, Kawasaki T", "date": "2002", "pmid": "12383500" }, { "title": "Mice deficient in nervous system-specific carbohydrate epitope HNK-1 exhibit impaired synaptic plasticity and spatial learning.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12032138", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Yamamoto S, Oka S, Inoue M, Shimuta M, Manabe T, Takahashi H, Miyamoto M, Asano M, Sakagami J, Sudo K, Iwakura Y, Ono K, Kawasaki T", "date": "2002", "pmid": "12032138" }, { "title": "Immunocytological localization of the HNK-1 carbohydrate in murine cerebellum, hippocampus and spinal cord using monoclonal antibodies with different epitope specificities.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11875281", "journal": "Journal of neurocytology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Rollenhagen A, Czaniera R, Albert M, Wintergerst ES, Schachner M", "date": "2001", "pmid": "11875281" }, { "title": "Carbohydrate-protein interactions between HNK-1-reactive sulfoglucuronyl glycolipids and the proteoglycan lectin domain mediate neuronal cell adhesion and neurite outgrowth.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11208904", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Miura R, Ethell IM, Yamaguchi Y", "date": "2001", "pmid": "11208904" }, { "title": "The HNK-1 carbohydrate epitope in the eye: basic science and functional implications.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11070366", "journal": "Progress in retinal and eye research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Uusitalo M, Kivela T", "date": "2001", "pmid": "11070366" }, { "title": "Characterization of N-glycans from mouse brain neural cell adhesion molecule.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11425798", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Liedtke S, Geyer H, Wuhrer M, Geyer R, Frank G, Gerardy-Schahn R, Zahringer U, Schachner M", "date": "2001", "pmid": "11425798" }, { "title": "Evidence for the presence of N-CAM 180 on astrocytes from rat cerebellum and differences in glycan structures between N-CAM 120 and N-CAM 140.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10559782", "journal": "Glia", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Sasaki T, Endo T", "date": "1999", "pmid": "10559782" }, { "title": "High prevalence of 2-mono- and 2,6-di-substituted manol-terminating sequences among O-glycans released from brain glycopeptides by reductive alkaline hydrolysis.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10469154", "journal": "European journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Chai W, Yuen CT, Kogelberg H, Carruthers RA, Margolis RU, Feizi T, Lawson AM", "date": "1999", "pmid": "10469154" }, { "title": "Expression cloning of a human sulfotransferase that directs the synthesis of the HNK-1 glycan on the neural cell adhesion molecule and glycolipids.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9478973", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Ong E, Yeh JC, Ding Y, Hindsgaul O, Fukuda M", "date": "1998", "pmid": "9478973" }, { "title": "[Molecular biological approach to functions of telencephalin, a cell adhesion molecule and HNK-1 carbohydrate epitope, which is commonly expressed on cell adhesion molecules in the nervous system].", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9800516", "journal": "Yakugaku zasshi : Journal of the Pharmaceutical Society of Japan", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Oka S", "date": "1998", "pmid": "9800516" }, { "title": "HNK-1 carbohydrate-mediated cell adhesion to laminin-1 is different from heparin-mediated and sulfatide-mediated cell adhesion.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9210489", "journal": "European journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Hall H, Deutzmann R, Timpl R, Vaughan L, Schmitz B, Schachner M", "date": "1997", "pmid": "9210489" }, { "title": "Characterization of a sulfoglucuronyl carbohydrate binding protein in the developing nervous system.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9048776", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Nair SM, Jungalwala FB", "date": "1997", "pmid": "9048776" }, { "title": "Brain contains HNK-1 immunoreactive O-glycans of the sulfoglucuronyl lactosamine series that terminate in 2-linked or 2,6-linked hexose (mannose).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9083013", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Yuen CT, Chai W, Loveless RW, Lawson AM, Margolis RU, Feizi T", "date": "1997", "pmid": "9083013" }, { "title": "Generation and characterization of anti-sulfoglucuronosyl paragloboside monoclonal antibody NGR50 and its immunoreactivity with peripheral nerve.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8794950", "journal": "Journal of neuroscience research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Yamawaki M, Ariga T, Bigbee JW, Ozawa H, Kawashima I, Tai T, Kanda T, Yu RK", "date": "1996", "pmid": "8794950" }, { "title": "Structure of the HNK-1 carbohydrate epitope on bovine peripheral myelin glycoprotein P0.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8798480", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Voshol H, van Zuylen CW, Orberger G, Vliegenthart JF, Schachner M", "date": "1996", "pmid": "8798480" }, { "title": "Structural and electron microscopic analysis of neurocan and recombinant neurocan fragments.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8663259", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Retzler C, Wiedemann H, Kulbe G, Rauch U", "date": "1996", "pmid": "8663259" }, { "title": "Purification, characterization and developmental expression of a brain-specific chondroitin sulfate proteoglycan, 6B4 proteoglycan/phosphacan.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7477903", "journal": "Neuroscience", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Maeda N, Hamanaka H, Oohira A, Noda M", "date": "1995", "pmid": "7477903" }, { "title": "Glycans and the modulation of neural-recognition molecule function.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7539963", "journal": "Trends in neurosciences", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Schachner M, Martini R", "date": "1995", "pmid": "7539963" }, { "title": "The HNK-1 reactive sulfoglucuronyl glycolipids are ligands for L-selectin and P-selectin but not E-selectin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679503", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Needham LK, Schnaar RL", "date": "1993", "pmid": "7679503" }, { "title": "Sulfoglycolipids bind to adhesive protein amphoterin (P30) in the nervous system.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1370890", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Mohan PS, Laitinen J, Merenmies J, Rauvala H, Jungalwala FB", "date": "1992", "pmid": "1370890" }, { "title": "Cranial and trunk neural crest cells use different mechanisms for attachment to extracellular matrices.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1289052", "journal": "Development (Cambridge, England)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Lallier T, Leblanc G, Artinger KB, Bronner-Fraser M", "date": "1992", "pmid": "1289052" }, { "title": "The L2/HNK-1 Carbohydrate Epitope is Involved in the Preferential Outgrowth of Motor Neurons on Ventral Roots and Motor Nerves.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12106326", "journal": "The European journal of neuroscience", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Martini R, Xin Y, Schmitz B, Schachner M", "date": "1992", "pmid": "12106326" }, { "title": "Developmentally and spatially regulated expression of HNK-1 carbohydrate antigen on a novel phosphatidylinositol-anchored glycoprotein in rat brain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1717490", "journal": "The Journal of cell biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Yoshihara Y, Oka S, Watanabe Y, Mori K", "date": "1991", "pmid": "1717490" }, { "title": "A carbohydrate epitope defined by monoclonal antibody VC1.1 is found on N-CAM and other cell adhesion molecules.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1723642", "journal": "Brain research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Naegele JR, Barnstable CJ", "date": "1991", "pmid": "1723642" }, { "title": "Expression and localization in the developing cerebellum of the carbohydrate epitopes revealed by Elec-39, an IgM monoclonal antibody related to HNK-1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1714552", "journal": "Neuroscience", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Kuchler S, Zanetta JP, Bon S, Zaepfel M, Massoulie J, Vincendon G", "date": "1991", "pmid": "1714552" }, { "title": "Sulfoglucuronyl glycolipids bind laminin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2338555", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Mohan PS, Chou DK, Jungalwala FB", "date": "1990", "pmid": "2338555" }, { "title": "Characterization of a monoclonal antibody directed against a sulphoglycolipid that is evolutionarily conserved and developmentally regulated in rat brain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2471598", "journal": "Cell and tissue research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Borroni E, Derrington EA, Whittaker VP", "date": "1989", "pmid": "2471598" }, { "title": "Detection of the L2/HNK-1 carbohydrate epitope on glycoproteins and acidic glycolipids of the insect Calliphora vicina.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2459311", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Dennis RD, Antonicek H, Wiegandt H, Schachner M", "date": "1988", "pmid": "2459311" }, { "title": "Molecular differentiation of the otic vesicle and neural tube in the chick embryo demonstrated by monoclonal antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3217051", "journal": "Neuroscience research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Obata K, Tanaka H", "date": "1988", "pmid": "3217051" }, { "title": "Expression of the HNK-1/NC-1 epitope in early vertebrate neurogenesis.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2449968", "journal": "Cell and tissue research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Tucker GC, Delarue M, Zada S, Boucaut JC, Thiery JP", "date": "1988", "pmid": "2449968" }, { "title": "The L2/HNK-1 carbohydrate of neural cell adhesion molecules is involved in cell interactions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2448311", "journal": "The Journal of cell biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Kunemund V, Jungalwala FB, Fischer G, Chou DK, Keilhauer G, Schachner M", "date": "1988", "pmid": "2448311" }, { "title": "An immunoglobulin M monoclonal antibody, recognizing a subset of acetylcholinesterase molecules from electric organs of Electrophorus and Torpedo, belongs to the HNK-1 anti-carbohydrate family.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2445915", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Bon S, Meflah K, Musset F, Grassi J, Massoulie J", "date": "1987", "pmid": "2445915" }, { "title": "Phylogenetically conserved antigen on nerve cells and lymphocytes resembles myelin-associated glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2433689", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Peault B, Chen CL, Cooper MD, Barbu M, Lipinski M, Le Douarin NM", "date": "1987", "pmid": "2433689" }, { "title": "Characterization of sulfated glucuronic acid containing glycolipids reacting with IgM M-proteins in patients with neuropathy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2433270", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Ariga T, Kohriyama T, Freddo L, Latov N, Saito M, Kon K, Ando S, Suzuki M, Hemling ME, Rinehart KL Jr, et al.", "date": "1987", "pmid": "2433270" }, { "title": "Sulfated glucuronic acid-containing glycoconjugates are temporally and spatially regulated antigens in the developing mammalian nervous system.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3817300", "journal": "Developmental biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Schwarting GA, Jungalwala FB, Chou DK, Boyer AM, Yamamoto M", "date": "1987", "pmid": "3817300" }, { "title": "Molecular markers of neuronal subpopulations in layers 4, 5, and 6 of cat primary visual cortex.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3553447", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Arimatsu Y, Naegele JR, Barnstable CJ", "date": "1987", "pmid": "3553447" }, { "title": "Molecular specificity of L2 monoclonal antibodies that bind to carbohydrate determinants of neural cell adhesion molecules and their resemblance to other monoclonal antibodies recognizing the myelin-associated glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2430667", "journal": "Brain research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Noronha AB, Ilyas A, Antonicek H, Schachner M, Quarles RH", "date": "1986", "pmid": "2430667" }, { "title": "Differential inhibition of neurone-neurone, neurone-astrocyte and astrocyte-astrocyte adhesion by L1, L2 and N-CAM antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/4033770", "journal": "Nature", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Keilhauer G, Faissner A, Schachner M", "date": "1985", "pmid": "4033770" }, { "title": "Accelerated regenerative neurite formation by a neuronal surface epitope reactive with the monoclonal antibody, Leu 7.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2409487", "journal": "Neuroscience letters", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "McGarry RC, Riopelle RJ, Roder JC", "date": "1985", "pmid": "2409487" }, { "title": "Identical reactivity of monoclonal antibodies HNK-1 and NC-1: conservation in vertebrates on cells derived from the neural primordium and on some leukocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6207939", "journal": "Cell differentiation", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Tucker GC, Aoyama H, Lipinski M, Tursz T, Thiery JP", "date": "1984", "pmid": "6207939" }, { "title": "Neural cell adhesion molecules and myelin-associated glycoprotein share a common carbohydrate moiety recognized by monoclonal antibodies L2 and HNK-1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6206400", "journal": "Nature", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Kruse J, Mailhammer R, Wernecke H, Faissner A, Sommer I, Goridis C, Schachner M", "date": "1984", "pmid": "6206400" }, { "title": "A human lymphocyte antigen is shared with a group of glycoproteins in peripheral nerve.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6514226", "journal": "Neuroscience letters", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Inuzuka T, Quarles RH, Noronha AB, Dobersen MJ, Brady RO", "date": "1984", "pmid": "6514226" }, { "title": "Specificity of mouse and human monoclonal antibodies to myelin-associated glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6207463", "journal": "Neurology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Nobile-Orazio E, Hays AP, Latov N, Perman G, Golier J, Shy ME, Freddo L", "date": "1984", "pmid": "6207463" }, { "title": "Monoclonal antibody to neural cell surface protein: identification of a glycoprotein family of restricted cellular localization.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6355895", "journal": "Neuroscience", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Rougon G, Hirsch MR, Hirn M, Guenet JL, Goridis C", "date": "1983", "pmid": "6355895" }, { "title": "A differentiation antigen of human NK and K cells identified by a monoclonal antibody (HNK-1).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6790607", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Abo T, Balch CM", "date": "1981", "pmid": "6790607" }, { "title": "Selection of chinese hamster somatic cell mutants after irradiation of BUdR-labelled cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1107336", "journal": "Journal of cellular physiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54406UD", "id": "G54406UD", "database": "GlyTouCan" } ], "authors": "Thirion JP, Labrecque R, Vu TP", "date": "1976", "pmid": "1107336" } ], "smiles_isomeric": 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"publication": [ { "title": "Characterization of ganglioside expression in human melanoma cells: immunological and biochemical analysis.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8262898", "journal": "Journal of biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G56478LD", "id": "G56478LD", "database": "GlyTouCan" } ], "authors": "Kawashima I, Ozawa H, Kotani M, Suzuki M, Kawano T, Gomibuchi M, Tai T", "date": "1993", "pmid": "8262898" }, { "title": "Concanavalin A-stimulated expression of gangliosides with GalNAc beta 1-4(NeuAc alpha 2-3)Gal beta structure in murine thymocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1726779", "journal": "Glycoconjugate journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G56478LD", "id": "G56478LD", "database": "GlyTouCan" } ], "authors": "Horikawa K, Yamasaki M, Iwamori M, Nakakuma H, Takatsuki K, Nagai Y", "date": "1991", "pmid": "1726779" }, { "title": "The abnormal occurrence and the 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9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21486_P", "id": "carbNlink_21486_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=29014", "id": "29014", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 3480.76, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, 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2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13439", "id": "13439", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3448", "id": "3448", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23346", "id": "23346", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853261", "id": "CID91853261", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285642", "id": "SID252285642", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/3153", "id": "3153", "database": "UniCarbKB" } ], "glycoprotein": [ { 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"http://www.unicarbkb.org/structure/3153", "id": "3153", "database": "UniCarbKB" } ], "authors": "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "date": "1996", "pmid": "8639592" }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1388166", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3153", "id": "3153", "database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" } ], "smiles_isomeric": 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"Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { 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"N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7708", "id": "7708", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7708", "id": "7708", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 184 }, { "uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 241 } ], "mass_pme": 4029.02, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7708", "id": "7708", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7708", "id": "7708", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7708", "id": "7708", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": 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], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G68969GZ": { "glytoucan_ac": "G68969GZ", "mass": 1973.73, "iupac": "?-D-Galp-(1->?),?-L-Fucp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3/6)[?-D-GlcpNAc-(1->?)[?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a1221m-1x_1-5][a1221m-1a_1-5][a2112h-1x_1-5]/1-1-2-3-4-5-3-4-4-6-7/a4-b1_a6-j1_b4-c1_d1-c3|c6_g1-c3|c6_d?-e1_e?-f1_g?-h1_g?-i1_k1-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?}", "glycoct": 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"database": "UniCarbKB" } ], "authors": "Saarinen J, Welgus HG, Flizar CA, Kalkkinen N, Helin J", "date": "1999", "pmid": "10092871" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": "" }, "G57997IN": { "glytoucan_ac": "G57997IN", "mass": 2255.79, "iupac": 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}, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5369", "id": "5369", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9789", "id": "9789", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15695", "id": "15695", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91862604", "id": "CID91862604", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296845", "id": "SID252296845", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4580.31, "inchi_key": "BTQYJBXYFTUTCE-FFFMVOEZSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO[C@@]7(C[C@@H]([C@H]([C@@H](O7)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE87", "parentid": "N1", "name": "N-glycan_b-D-GlcNAcp_E87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE93", "parentid": "NE87", "name": "N-glycan_b-D-Galp_E93" }, { "attachedby": 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"NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7670", "id": "7670", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "Q92876-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q92876/annotated", "id": "Q92876", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-6", "gene_name": "KLK6", "position": 134 } ], "mass_pme": 2868.46, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G55318GC": { "glytoucan_ac": "G55318GC", "mass": 3025.07, "iupac": "alpha-D-NeupAc-(2->3/6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3/6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4/6)]-alpha-D-Manp-(1->]", "wurcs": "WURCS=2.0/7,15,14/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-7/a4-b1_a6-o1_b4-c1_d2-h1_e4-f1_h4-i1_k2-l1_l4-m1_d1-c3|c6_e1-d4|d6_g2-f3|f6_j2-i3|i6_k1-c3|c6_n2-m3|m6", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(4|6+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3|6+2)10d\\n10:10d(5+1)11n\\n11:6o(2+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3|6+2)15d\\n15:15d(5+1)16n\\n16:5o(3|6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3|6+2)21d\\n21:21d(5+1)22n\\n22:1o(6+1)23d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G55318GC", "id": "G55318GC", "database": "GlyTouCan" } ], 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"count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G33876UV": { "glytoucan_ac": "G33876UV", "mass": 1607.58, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->?)[alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3/a4-b1_b4-c1_d2-e1_e4-f1_f6-g2_c?-d1_c?-h1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:b-dglc-HEX-1:5\\n9s:n-acetyl\\n10b:b-dgal-HEX-1:5\\n11s:n-acetyl\\n12b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n13s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(-1+1)6d\\n6:5o(-1+1)7d\\n7:7o(2+1)8d\\n8:8d(2+1)9n\\n9:8o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(6+2)12d\\n12:12d(5+1)13n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/4257", "id": "4257", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/173", "id": "173", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4257", "id": "4257", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P09466-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P09466/annotated", "id": "P09466", "database": "UniCarbKB" } ], "protein_name": "Glycodelin", "gene_name": "PAEP", "position": 81 }, { "uniprot_canonical_ac": "P09466-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P09466/annotated", "id": "P09466", "database": "UniCarbKB" } ], "protein_name": "Glycodelin", "gene_name": "PAEP", "position": 46 } ], "mass_pme": 2000.02, "inchi_key": "", "publication": [ { "title": "Structural analysis of the oligosaccharides derived from glycodelin, a human glycoprotein with potent immunosuppressive and contraceptive activities.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7592613", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4257", "id": "4257", "database": "UniCarbKB" } ], "authors": "Dell A, Morris HR, Easton RL, Panico M, Patankar M, Oehniger S, Koistinen R, Koistinen H, Seppala M, Clark GF", "date": "1995", "pmid": "7592613" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": "" }, "G24355OK": { "glytoucan_ac": "G24355OK", "mass": 2664.99, "iupac": 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"", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G46103YX", "id": "G46103YX", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", 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{ "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpa1-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpa1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"name": "Hexose" }, { "residue": "hexnac", "count": 0, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-3DGalpb1-4DXylpb1-", "number_monosaccharides": 3, "motifs": [], "inchi": "InChI=1S/C17H30O15/c18-1-4-7(20)10(23)12(25)16(29-4)32-14-9(22)5(2-19)30-17(13(14)26)31-6-3-28-15(27)11(24)8(6)21/h4-27H,1-3H2/t4-,5-,6-,7+,8+,9+,10+,11-,12-,13-,14+,15-,16+,17+/m1/s1" }, "G82487CR": { "glytoucan_ac": "G82487CR", "mass": 2953.05, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": 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for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" }, { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Protein and carbohydrate structural analysis of a recombinant soluble CD4 receptor by mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2592374", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Carr SA, Hemling ME, Folena-Wasserman G, Sweet RW, Anumula K, Barr JR, Huddleston MJ, Taylor P", "date": "1989", "pmid": "2592374" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1525", "id": "1525", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7610", "id": "7610", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P04070-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04070/annotated", "id": "P04070", "database": "UniCarbKB" } ], "protein_name": "Vitamin K-dependent protein C", "gene_name": "PROC", "position": 371 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 } ], "mass_pme": 2857.45, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7610", "id": "7610", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7610", "id": "7610", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked 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"name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [ { "id": "G00017MO", "name": "Hyluronan" } ], "inchi": "" }, "G22188XM": { "glytoucan_ac": "G22188XM", "mass": 3683.31, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,18,17/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k4-o1_l4-m1_m6-n2_o4-p1_p3-q2", "glycoct": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G22188XM", "id": "G22188XM", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE87", "parentid": "N1", "name": "N-glycan_b-D-GlcNAcp_E87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE93", "parentid": "NE87", "name": "N-glycan_b-D-Galp_E93" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE100", "parentid": "NE93", "name": "N-glycan_a-D-Neu5Acp_E100" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N46", "parentid": "N32", "name": "N-glycan_a-D-Neup5Ac_46" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:x-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:a-dman-HEX-1:5\\n16b:x-dglc-HEX-1:5\\n17b:x-dgal-HEX-1:5\\n18s:n-acetyl\\n19b:x-dglc-HEX-1:5\\n20b:x-dgal-HEX-1:5\\n21s:n-acetyl\\n22b:x-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(4+1)13d\\n13:13d(2+1)14n\\n14:5o(6+1)15d\\n15:15o(-1+1)16d\\n16:16o(-1+1)17d\\n17:16d(2+1)18n\\n18:15o(-1+1)19d\\n19:19o(-1+1)20d\\n20:19d(2+1)21n\\n21:1o(6+1)22d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n23b:x-dglc-HEX-1:5\\n24b:x-dgal-HEX-1:5\\n25s:n-acetyl\\nLIN\\n22:23o(-1+1)24d\\n23:23d(2+1)25n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n26b:x-dglc-HEX-1:5\\n27b:x-dgal-HEX-1:5\\n28s:n-acetyl\\nLIN\\n24:26o(-1+1)27d\\n25:26d(2+1)28n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n29b:x-dglc-HEX-1:5\\n30b:x-dgal-HEX-1:5\\n31s:n-acetyl\\nLIN\\n26:29o(-1+1)30d\\n27:29d(2+1)31n\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|15|16|17|19|20|22\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n32b:x-lgal-HEX-1:5|6:d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1855", "id": "1855", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 } ], "mass_pme": 4886.48, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4819", "id": "4819", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 10, "name": "Hexose" }, { "residue": "hexnac", "count": 10, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 22, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G67189MD": { "glytoucan_ac": "G67189MD", "mass": 326.12, "iupac": "alpha-L-Fucp-(1->2)-D-Gal(?->", "wurcs": "WURCS=2.0/2,2,1/[u2112h][a1221m-1a_1-5]/1-2/a2-b1", "glycoct": "RES\\n1b:x-dgal-HEX-x:x\\n2b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1o(2+1)2d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G67189MD", "id": "G67189MD", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10066", "id": "10066", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10692", "id": "10692", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13639", "id": "13639", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16394", "id": "16394", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28534", "id": "28534", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3160", "id": "3160", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3161", "id": "3161", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+34844", "id": "34844", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36880", "id": "36880", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+38012", "id": "38012", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+38262", "id": "38262", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+39291", "id": "39291", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+42686", "id": "42686", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+43985", "id": "43985", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+44591", "id": "44591", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+45877", "id": "45877", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+47556", "id": "47556", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+48249", "id": "48249", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4858", "id": "4858", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=517", "id": "517", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=643", "id": "643", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 424.23, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 0, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 2, "motifs": [], "inchi": "" }, "G23166NU": { "glytoucan_ac": "G23166NU", "mass": 3101.12, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,17,16/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-4-3-1-4-1-4-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e4-f1_f3-g1_g4-h1_i2-j1_i6-n1_j4-k1_k3-l1_l4-m1_n4-o1_o3-p1_p4-q1", "glycoct": 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"name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00032MO", "name": "O-Glycan core 1 fuzzy" }, { "id": "G00034MO", "name": "O-Glycan core 2 fuzzy" }, { "id": "G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G23695IQ": { "glytoucan_ac": "G23695IQ", "mass": 3171.13, "iupac": "?-L-Fucp-(1->?),?-L-Fucp-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3)[?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": 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"name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G92188CK": { "glytoucan_ac": "G92188CK", "mass": 2044.7, "iupac": "?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1122h-1x_1-5]/1-1-2-3-3-3-3-4-4-4-4-4/a4-b1_b4-c1_c3-d1_c6-e1_e3-f1_e6-g1_h?-a?|b?|c?|d?|e?|f?|g?}_i?-a?|b?|c?|d?|e?|f?|g?}_j?-a?|b?|c?|d?|e?|f?|g?}_k?-a?|b?|c?|d?|e?|f?|g?}_l?-a?|b?|c?|d?|e?|f?|g?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:a-dman-HEX-1:5\\n9b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(6+1)7d\\n7:7o(3+1)8d\\n8:7o(6+1)9d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n10b:x-dman-HEX-1:5\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n11b:x-dman-HEX-1:5\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n12b:x-dman-HEX-1:5\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n13b:x-dman-HEX-1:5\\nUND5:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n14b:x-dman-HEX-1:5", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/6425", "id": "6425", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=high-mannose_N-glycan&jump_to_nav=true", "name": "high mannose" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/3648", "id": "3648", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/6425", "id": "6425", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P29965-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P29965/annotated", "id": "P29965", "database": "UniCarbKB" } ], "protein_name": "CD40 ligand", "gene_name": "CD40LG", "position": 240 } ], "mass_pme": 2577.29, "inchi_key": "", "publication": [ { "title": "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/6425", "id": "6425", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 10, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00028MO", "name": "N-Glycan high mannose" } ], "inchi": "" }, "G36521AS": { "glytoucan_ac": "G36521AS", "mass": 1827.68, "iupac": "beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-1-4-5-3-1/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-f1_f3-g1_f4-h1_i2-j1", "glycoct": 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{ "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": 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"protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 762 }, { "uniprot_canonical_ac": "P02675-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02675/annotated", "id": "P02675", "database": "UniCarbKB" } ], "protein_name": "Fibrinogen beta chain", "gene_name": "FGB", "position": 394 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 138 }, { "uniprot_canonical_ac": "P02679-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02679/annotated", "id": "P02679", "database": "UniCarbKB" } ], "protein_name": "Fibrinogen gamma chain", "gene_name": "FGG", "position": 78 }, { "uniprot_canonical_ac": "P01011-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01011/annotated", "id": "P01011", "database": "UniCarbKB" } ], "protein_name": "Alpha-1-antichymotrypsin", "gene_name": "SERPINA3", "position": 127 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 358 }, { "uniprot_canonical_ac": "P48199-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P48199/annotated", "id": "P48199", "database": "UniCarbKB" } ], "protein_name": "C-reactive protein", "gene_name": "", "position": 147 }, { "uniprot_canonical_ac": "P02743-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02743/annotated", "id": "P02743", "database": "UniCarbKB" } ], "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "position": 51 }, { 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"ZHYGTQWNPCLWIP-RLYLNQAISA-N", "publication": [ { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "N-glycan patterns of human transferrin produced in Trichoplusia ni insect cells: effects of mammalian galactosyltransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10929010", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Ailor E, Takahashi N, Tsukamoto Y, Masuda K, Rahman BA, Jarvis DL, Lee YC, Betenbaugh MJ", "date": "2000", "pmid": "10929010" }, { "title": "X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10029548", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Bewley MC, Tam BM, Grewal J, He S, Shewry S, Murphy ME, Mason AB, Woodworth RC, Baker EN, MacGillivray RT", "date": "1999", "pmid": "10029548" }, { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", "journal": "Endocrine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Elliott MM, Kardana A, Lustbader JW, Cole LA", "date": "1997", "pmid": "9449027" }, { "title": "Structural determination of two N-linked glycans isolated from recombinant human lactoferrin expressed in BHK cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7774715", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Legrand D, Salmon V, Coddeville B, Benaissa M, Plancke Y, Spik G", "date": "1995", "pmid": "7774715" }, { "title": "Alteration of asparagine-linked glycosylation in serum transferrin of patients with hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8174273", "journal": "Clinica chimica acta; international journal of clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Matsumoto K, Maeda Y, Kato S, Yuki H", "date": "1994", "pmid": "8174273" }, { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous 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Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "Carbohydrate deficient glycoprotein syndrome type II: a deficiency in Golgi localised N-acetyl-glucosaminyltransferase II.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7944531", "journal": "Archives of disease in childhood", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Jaeken J, Schachter H, Carchon H, De Cock P, Coddeville B, Spik G", "date": "1994", "pmid": "7944531" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Studies on the carbohydrate moiety and on the biosynthesis of rat C-reactive protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8486673", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Sambasivam H, Rassouli M, Murray RK, Nagpurkar A, Mookerjea S, Azadi P, Dell A, Morris HR", "date": "1993", "pmid": "8486673" }, { "title": "Structural analysis on the sugar chains of human alpha 1-antitrypsin: presence of fucosylated biantennary glycan in hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8390218", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Saitoh A, Aoyagi Y, Asakura H", "date": "1993", "pmid": "8390218" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "N-glycosylation site mapping of human serotransferrin by serial lectin affinity chromatography, fast atom bombardment-mass spectrometry, and 1H nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1456441", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Fu D, van Halbeek H", "date": "1992", "pmid": "1456441" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1899031", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "1899031" }, { "title": "Asparagine-linked oligosaccharide processing in lepidopteran insect cells. Temporal dependence of the nature of the oligosaccharides assembled on asparagine-289 of recombinant human plasminogen produced in baculovirus vector infected Spodoptera frugiperda (IPLB-SF-21AE) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2059624", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2059624" }, { "title": "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2065054", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2065054" }, { "title": "Structure determination of the glycans of human-serum alpha 1-antichymotrypsin using 1H-NMR spectroscopy and deglycosylation by N-glycanase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2015821", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Laine A, Hachulla E, Strecker G, Michalski JC, Wieruszeski JM", "date": "1991", "pmid": "2015821" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. Absence of fucose residues questions the proposed mechanism of hyposideraemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2390069", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Derisbourg P, Wieruszeski JM, Montreuil J, Spik G", "date": "1990", "pmid": "2390069" }, { "title": "Oligosaccharide processing in the expression of human plasminogen cDNA by lepidopteran insect (Spodoptera frugiperda) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2386787", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Fraser MJ, Castellino FJ", "date": "1990", "pmid": "2386787" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Characterization of the B-chain of human plasma alpha 2HS-glycoprotein. The complete amino acid sequence and primary structure of its heteroglycan.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6833285", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Gejyo F, Chang JL, Burgi W, Schmid K, Offner GD, Troxler RF, Van Halbeek H, Dorland L, Gerwig GJ, Vliegenthart JF", "date": "1983", "pmid": "6833285" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" }, { "title": "Study of the carbohydrate moiety of human serum sex hormone-binding globulin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6684483", "journal": "Biochimica et biophysica acta", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Avvakumov GV, Matveentseva IV, Akhrem LV, Strel'chyonok OA, Akhrem AA", "date": "1983", "pmid": "6684483" }, { "title": "Structural study of the sugar chains of human lactoferrin: finding of four novel complex-type asparagine-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7068558", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Matsumoto A, Yoshima H, Takasaki S, Kobata A", "date": "1982", "pmid": "7068558" }, { "title": "The structures and microheterogeneity of the carbohydrate chains of human plasma ceruloplasmin. 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Structural characteristics of the triantennary complex type sugar chains of human plasma glycoproteins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7451505", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Yamashita K, Liang CJ, Funakoshi S, Kobata A", "date": "1981", "pmid": "7451505" }, { "title": "Studies on the structures of the carbohydrate moiety of human prothrombin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7309709", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1249", "id": "1249", "database": "UniCarbKB" } ], "authors": "Mizuochi T, Fujii J, Kisiel W, Kobata A", "date": "1981", "pmid": "7309709" }, { "title": "Studies on the oligosaccharide chains of human alpha 1-protease inhibitor. II. 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"other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C34H60N2O25/c1-9-19(46)24(51)25(52)33(54-9)60-29-18(36-11(3)43)32(58-27(13(45)5-38)20(47)12(44)4-37)57-16(8-41)28(29)59-34-26(53)30(22(49)15(7-40)56-34)61-31-17(35-10(2)42)23(50)21(48)14(6-39)55-31/h9,12-34,37-41,44-53H,4-8H2,1-3H3,(H,35,42)(H,36,43)/t9-,12+,13-,14+,15+,16+,17+,18+,19+,20-,21+,22-,23+,24+,25-,26+,27+,28+,29+,30-,31-,32-,33-,34-/m0/s1" }, "G95695ZV": { "glytoucan_ac": "G95695ZV", "mass": 3101.12, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,17,16/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-4-3-1-4-1-4-1-4-1-4/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-n1_j4-k1_k3-l1_l4-m1_n4-o1_o3-p1_p4-q1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide 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"protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide 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"N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N36", "parentid": "N10", "name": "N-glycan_b-D-GlcpNAc_36" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N37", "parentid": "N36", "name": "N-glycan_b-D-Galp_37" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, 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"id": "122", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=core-2_O-glycan&jump_to_nav=true", "name": "core 2" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=O-glycan&jump_to_nav=true", "name": "O-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbOlink_21280_D000", "id": "carbOlink_21280_D000", "database": "CFG" }, { "url": "xxx/yyy/GOG1223", "id": "GOG1223", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13480", "id": "13480", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1976", "id": "1976", "database": "GlyConnect" }, { "url": 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"journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/122", "id": "122", "database": "UniCarbKB" } ], "authors": "Tsuji T, Osawa T", "date": "1987", "pmid": "3571205" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@@H]([C@@H]([C@H]([C@H](O4)O)NC(=O)C)O[C@H]5[C@@H]([C@H]([C@H]([C@H](O5)CO)O)O)O)O)CO)CO)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "LFucpa1-2DGalpb1-4DGlcpNAcb1-6[DGalpb1-3]DGalpNAca1-", "number_monosaccharides": 5, "motifs": [ { "id": "G00031MO", 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"alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c4-h1_c6-k1_d2-e1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_l4-m1_m6-n2", "glycoct": 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antibodies produced against hepatocellular carcinoma cell line.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2416034", "journal": "Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00052MO", "id": "G00052MO", "database": "GlyTouCan" } ], "authors": "Imai K, Sasanami T, Nakanishi T, Noguchi T, Yachi A", "date": "1985", "pmid": "2416034" }, { "title": "Blood group-active carbohydrate chains on the receptor for epidermal growth factor of A431 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6094178", "journal": "The EMBO journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00052MO", "id": "G00052MO", "database": "GlyTouCan" } ], "authors": "Childs RA, Gregoriou M, Scudder P, Thorpe SJ, Rees AR, Feizi T", "date": "1984", "pmid": "6094178" }, { "title": "A monoclonal antibody against human colonic adenoma recognizes difucosylated Type-2-blood-group chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6189529", "journal": "Bioscience reports", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00052MO", "id": "G00052MO", "database": "GlyTouCan" } ], "authors": "Brown A, Feizi T, Gooi HC, Embleton MJ, Picard JK, Baldwin RW", "date": "1983", "pmid": "6189529" }, { "title": "The monoclonal antibody directed to difucosylated type 2 chain (Fuc alpha 1 leads to 2Gal beta 1 leads to 4[Fuc alpha 1 leads to 3]GlcNAc; Y Determinant).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6194156", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00052MO", "id": "G00052MO", "database": "GlyTouCan" } ], "authors": "Abe K, McKibbin JM, Hakomori S", "date": "1983", "pmid": "6194156" }, { "title": "Mouse monoclonal antibody F-3 recognizes the difucosyl type-2 blood group structure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6188690", "journal": 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"uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12345", "id": "12345", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+30108", "id": "30108", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+37034", "id": "37034", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4418", "id": "4418", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7095", "id": "7095", "database": "CarbBank" }, { "url": "xxx/yyy/GOG171", "id": "GOG171", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2500", "id": "2500", "database": 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"position": 177 } ], "mass_pme": 2496.27, "inchi_key": "RDRATMAABXASQV-KBTMZASGSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1661", "id": "1661", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Human alpha-N-acetylgalactosaminidase: site occupancy and structure of N-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10704524", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1661", "id": "1661", "database": "UniCarbKB" } ], "authors": "Ohta M, Ohnishi T, Ioannou YA, Hodgson ME, Matsuura F, Desnick RJ", "date": "2000", "pmid": "10704524" }, { "title": "Structure of the asparagine-linked sugar chains of porcine 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activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1661", "id": "1661", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1661", "id": "1661", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": 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"detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N49", "parentid": "N6", "name": "N-glycan_a-D-Neup5Gc_49" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" 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}, "G88227HW": { "glytoucan_ac": "G88227HW", "mass": 3537.25, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,17,16/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": 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"", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": "B3GNT8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": 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"Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": 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"Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13430", "id": "13430", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23337", "id": "23337", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851890", "id": "CID91851890", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252284005", "id": "SID252284005", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3394.72, "inchi_key": "YBKNGKXPRJCZRF-PONCTPNNSA-N", "publication": [], "smiles_isomeric": 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"rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "InChI=1S/C104H173N7O76/c1-23(125)105-45-59(139)78(35(13-117)161-90(45)158)176-92-47(107-25(3)127)62(142)84(40(18-122)168-92)183-102-77(157)87(185-104-89(187-96-51(111-29(7)131)64(144)82(39(17-121)172-96)181-100-74(154)69(149)55(135)33(11-115)165-100)75(155)85(42(20-124)173-104)177-93-48(108-26(4)128)61(141)80(37(15-119)169-93)179-98-72(152)67(147)53(133)31(9-113)163-98)58(138)44(174-102)22-160-103-88(70(150)56(136)43(175-103)21-159-91-46(106-24(2)126)60(140)79(36(14-118)167-91)178-97-71(151)66(146)52(132)30(8-112)162-97)186-95-50(110-28(6)130)65(145)83(41(19-123)171-95)182-101-76(156)86(57(137)34(12-116)166-101)184-94-49(109-27(5)129)63(143)81(38(16-120)170-94)180-99-73(153)68(148)54(134)32(10-114)164-99/h30-104,112-124,132-158H,8-22H2,1-7H3,(H,105,125)(H,106,126)(H,107,127)(H,108,128)(H,109,129)(H,110,130)(H,111,131)/t30-,31-,32-,33-,34-,35-,36-,37-,38-,39-,40-,41-,42-,43-,44-,45-,46-,47-,48-,49-,50-,51-,52+,53+,54+,55+,56-,57+,58-,59-,60-,61-,62-,63-,64-,65-,66+,67+,68+,69+,70+,71-,72-,73-,74-,75+,76-,77+,78-,79-,80-,81-,82-,83-,84-,85-,86+,87+,88+,89+,90-,91-,92+,93+,94+,95+,96+,97+,98+,99+,100+,101+,102+,103+,104-/m1/s1" 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(2+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:10o(6+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|11|13|14|16\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n17b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/5543", "id": "5543", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/44", "id": "44", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5543", "id": "5543", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00742-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00742/annotated", "id": "P00742", "database": "UniCarbKB" } ], "protein_name": "Coagulation factor X", "gene_name": "F10", "position": 221 } ], "mass_pme": 2857.45, "inchi_key": "", "publication": [ { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5543", "id": "5543", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13996", "id": "13996", "database": "CarbBank" }, { "url": "xxx/yyy/GOG143", "id": "GOG143", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2094", "id": "2094", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3523", "id": "3523", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23669", "id": "23669", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2710", "id": "2710", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10890", "id": "G10890", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855862", "id": "CID91855862", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288765", "id": "SID252288765", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1529", "id": "1529", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07359-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07359/annotated", "id": "P07359", "database": "UniCarbKB" } ], "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "position": 37 }, { "uniprot_canonical_ac": "P07359-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07359/annotated", "id": "P07359", "database": "UniCarbKB" } ], "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "position": 175 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3392.71, "inchi_key": "JCRNTSDBMWUXKV-LHSHDHABSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1529", "id": "1529", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1529", "id": "1529", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "The carbohydrate moiety of human platelet glycocalicin: the structures of the major Asn-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3571205", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1529", "id": "1529", "database": "UniCarbKB" } ], "authors": "Tsuji T, Osawa T", "date": "1987", "pmid": "3571205" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": 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"InChI=1S/C104H171N7O76/c1-24-54(133)67(146)71(150)94(164-24)161-22-46-82(62(141)49(89(156)165-46)107-27(4)124)177-91-51(109-29(6)126)64(143)79(41(18-119)170-91)180-97-75(154)85(61(140)44(174-97)21-162-99-87(70(149)58(137)37(14-115)168-99)183-92-52(110-30(7)127)65(144)77(39(16-117)171-92)178-95-72(151)68(147)57(136)36(13-114)166-95)182-100-88(184-93-53(111-31(8)128)66(145)78(40(17-118)172-93)179-96-73(152)69(148)59(138)45(175-96)23-163-103(101(157)158)9-32(129)47(105-25(2)122)83(185-103)55(134)34(131)11-112)74(153)81(43(20-121)173-100)176-90-50(108-28(5)125)63(142)80(42(19-120)169-90)181-98-76(155)86(60(139)38(15-116)167-98)187-104(102(159)160)10-33(130)48(106-26(3)123)84(186-104)56(135)35(132)12-113/h24,32-100,112-121,129-156H,9-23H2,1-8H3,(H,105,122)(H,106,123)(H,107,124)(H,108,125)(H,109,126)(H,110,127)(H,111,128)(H,157,158)(H,159,160)/t24-,32-,33-,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57-,58+,59-,60-,61+,62+,63+,64+,65+,66+,67+,68-,69-,70-,71-,72+,73+,74-,75-,76+,77+,78+,79+,80+,81+,82+,83+,84+,85-,86-,87-,88-,89+,90-,91-,92-,93-,94+,95-,96-,97-,98-,99-,100+,103+,104-/m0/s1" 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q2TAA5-1", "gene": "ALG11", "gene_link": "", "protein_name": "GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9BV10-1", "gene": "ALG12", "gene_link": "", "protein_name": "Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", 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"authors": "Trimble RB, Lubowski C, Hauer CR 3rd, Stack R, McNaughton L, Gemmill TR, Kumar SA", "date": "2004", "pmid": "14693913" }, { "title": "Structural characterization of the N-linked oligosaccharides in bile salt-stimulated lipase originated from human breast milk.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10024660", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2539", "id": "2539", "database": "UniCarbKB" } ], "authors": "Mechref Y, Chen P, Novotny MV", "date": "1999", "pmid": "10024660" }, { "title": "Variation of the glycosylation of human pancreatic bile-salt-dependent lipase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8404899", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2539", "id": "2539", "database": "UniCarbKB" } ], "authors": "Mas E, Abouakil N, Roudani S, Franc JL, Montreuil J, Lombardo D", "date": "1993", "pmid": "8404899" } ], "smiles_isomeric": 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"Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1281", "id": "1281", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1842.95, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G48989LO": { "glytoucan_ac": "G48989LO", "mass": 1769.63, "iupac": 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"count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G62768NK": { "glytoucan_ac": "G62768NK", "mass": 2044.7, "iupac": "?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1122h-1x_1-5]/1-1-2-3-3-4-4-4-4-4-4-4/a4-b1_b4-c1_c3-d1_c6-e1_f?-a?|b?|c?|d?|e?}_g?-a?|b?|c?|d?|e?}_h?-a?|b?|c?|d?|e?}_i?-a?|b?|c?|d?|e?}_j?-a?|b?|c?|d?|e?}_k?-a?|b?|c?|d?|e?}_l?-a?|b?|c?|d?|e?}", "glycoct": 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"id": "4822", "database": "UniCarbKB" } ], "taxid": 10090, "name": "Mus musculus" }, { "evidence": [ { "url": "http://www.unicarbkb.org/structure/4822", "id": "4822", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/376", "id": "376", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4822", "id": "4822", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "Q05769-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q05769/annotated", "id": "Q05769", "database": "UniCarbKB" } ], "protein_name": "Prostaglandin G/H synthase 2", "gene_name": "Ptgs2", "position": 130 }, { "uniprot_canonical_ac": "P02786-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02786/annotated", "id": "P02786", "database": "UniCarbKB" } ], "protein_name": "Transferrin receptor protein 1", "gene_name": "TFRC", "position": 727 } ], "mass_pme": 2577.29, "inchi_key": "", "publication": [ { "title": "Characterization of the glycosylation sites in cyclooxygenase-2 using mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11258925", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4822", "id": "4822", "database": "UniCarbKB" } ], "authors": "Nemeth JF, Hochgesang GP Jr, Marnett LJ, Caprioli RM", "date": "2001", "pmid": "11258925" }, { "title": "The critical glycosylation site of human transferrin receptor contains a high-mannose oligosaccharide.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7780197", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4822", "id": "4822", "database": "UniCarbKB" } ], "authors": "Hayes GR, Williams A, Costello CE, Enns CA, Lucas JJ", "date": "1995", "pmid": "7780197" }, { "title": "Identification of the O-linked glycosylation site of the human transferrin receptor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1421757", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4822", "id": "4822", "database": "UniCarbKB" } ], "authors": "Hayes GR, Enns CA, Lucas JJ", "date": "1992", "pmid": "1421757" }, { "title": "Human transferrin receptor contains O-linked oligosaccharides.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2403553", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4822", "id": "4822", "database": "UniCarbKB" } ], "authors": "Do SI, Enns C, Cummings RD", "date": "1990", "pmid": "2403553" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 10, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G02776UX": { "glytoucan_ac": "G02776UX", "mass": 2021.74, "iupac": "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/4,12,11/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-3-4-2-3-2-4-4/a4-b1_b3-c1_c3-d1_c4-e1_e3-f1_f3-g1_f4-h1_h3-i1_i3-j1_i4-l1_j2-k1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:a-lgal-HEX-1:5|6:d\\n6b:b-dgal-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\n10b:b-dgal-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-lgal-HEX-1:5|6:d\\n15b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(3+1)5d\\n5:3o(4+1)6d\\n6:6o(3+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:7o(4+1)10d\\n10:10o(3+1)11d\\n11:11d(2+1)12n\\n12:11o(3+1)13d\\n13:13o(2+1)14d\\n14:11o(4+1)15d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G02776UX", "id": "G02776UX", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28863", "id": "28863", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8189", "id": "8189", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12761", "id": "12761", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2498.28, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 4, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00048MO", "name": "Lewis B" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" 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"", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_43768_D000", "id": "carbNlink_43768_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=32381", "id": "32381", "database": "GlycomeDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855102", "id": "CID91855102", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287854", "id": "SID252287854", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3334.67, "inchi_key": "JCFRTMVDJKRNFZ-ITGFYYQPSA-N", "publication": [], "smiles_isomeric": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(4+1)7d\\n7:7d(2+1)8n\\n8:5o(6+1)9d\\n9:1o(6+1)10d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n11b:x-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:a-lgal-HEX-1:5|6:d\\n14b:b-dgal-HEX-1:5\\nLIN\\n10:11d(2+1)12n\\n11:11o(3+1)13d\\n12:11o(4+1)14d\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n15b:x-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:a-lgal-HEX-1:5|6:d\\n18b:b-dgal-HEX-1:5\\nLIN\\n13:15d(2+1)16n\\n14:15o(3+1)17d\\n15:15o(4+1)18d\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n19b:x-dglc-HEX-1:5\\n20b:x-dgal-HEX-1:5\\n21s:n-acetyl\\nLIN\\n16:19o(-1+1)20d\\n17:19d(2+1)21n\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n22b:x-dglc-HEX-1:5\\n23b:x-dgal-HEX-1:5\\n24s:n-acetyl\\nLIN\\n18:22o(-1+1)23d\\n19:22d(2+1)24n", 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"name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G12715RL": { "glytoucan_ac": "G12715RL", "mass": 2738.0, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": 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"N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": "B3GNT8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": 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"protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+46614", "id": "46614", "database": "CarbBank" }, { "url": "xxx/yyy/GOG82", "id": "GOG82", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=7614", "id": "7614", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/334", "id": "334", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12018", "id": "12018", "database": 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"http://unicarbkb.org/proteinsummary/Q63345/annotated", "id": "Q63345", "database": "UniCarbKB" } ], "protein_name": "Myelin-oligodendrocyte glycoprotein", "gene_name": "", "position": 58 }, { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 } ], "mass_pme": 2378.21, "inchi_key": "NSDMKXHWJJXSLX-AMDSVQNHSA-N", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4015", "id": "4015", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4015", "id": "4015", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4015", "id": "4015", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4015", "id": "4015", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4015", "id": "4015", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" } ], "smiles_isomeric": 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"count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [], "inchi": "InChI=1S/C32H55NO26/c1-7(38)33-13-18(43)25(11(5-37)52-28(13)50)57-31-24(49)26(17(42)12(56-31)6-51-29-22(47)19(44)14(39)8(2-34)53-29)58-32-27(21(46)16(41)10(4-36)55-32)59-30-23(48)20(45)15(40)9(3-35)54-30/h8-32,34-37,39-50H,2-6H2,1H3,(H,33,38)/t8-,9-,10-,11-,12-,13-,14-,15-,16-,17-,18-,19+,20+,21+,22+,23+,24+,25-,26+,27+,28?,29+,30-,31+,32-/m1/s1" }, "G14757SY": { "glytoucan_ac": "G14757SY", "mass": 1363.48, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,7,6/[u2122h_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-5-6-3/a4-b1_b3-c1_b6-g1_c2-d1_d4-e1_e6-f2", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dman-HEX-1:5\\n4b:a-dman-HEX-1:5\\n5b:b-dglc-HEX-1:5\\n6s:n-acetyl\\n7b:b-dgal-HEX-1:5\\n8b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n9s:n-acetyl\\n10b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3o(3+1)4d\\n4:4o(2+1)5d\\n5:5d(2+1)6n\\n6:5o(4+1)7d\\n7:7o(6+2)8d\\n8:8d(5+1)9n\\n9:3o(6+1)10d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G14757SY", "id": "G14757SY", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10665", "id": "10665", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10738", "id": "10738", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10830", "id": "10830", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1331", "id": "1331", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1332", "id": "1332", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1333", "id": "1333", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1334", "id": "1334", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16028", "id": "16028", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+18990", "id": "18990", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+33656", "id": "33656", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36005", "id": "36005", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=197", "id": "197", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=250", "id": "250", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1713.87, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G67971GL": { "glytoucan_ac": "G67971GL", "mass": 2206.75, "iupac": "?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1122h-1x_1-5]/1-1-2-3-3-3-3-4-4-4-4-4-4/a4-b1_b4-c1_c3-d1_c6-e1_e3-f1_e6-g1_h?-a?|b?|c?|d?|e?|f?|g?}_i?-a?|b?|c?|d?|e?|f?|g?}_j?-a?|b?|c?|d?|e?|f?|g?}_k?-a?|b?|c?|d?|e?|f?|g?}_l?-a?|b?|c?|d?|e?|f?|g?}_m?-a?|b?|c?|d?|e?|f?|g?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:a-dman-HEX-1:5\\n9b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(6+1)7d\\n7:7o(3+1)8d\\n8:7o(6+1)9d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n10b:x-dman-HEX-1:5\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n11b:x-dman-HEX-1:5\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n12b:x-dman-HEX-1:5\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n13b:x-dman-HEX-1:5\\nUND5:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n14b:x-dman-HEX-1:5\\nUND6:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9\\nSubtreeLinkageID1:o(-1+-1)d\\nRES\\n15b:x-dman-HEX-1:5", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/6426", "id": "6426", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=high-mannose_N-glycan&jump_to_nav=true", "name": "high mannose" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1124", "id": "1124", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/6426", "id": "6426", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P29965-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P29965/annotated", "id": "P29965", "database": "UniCarbKB" } ], "protein_name": "CD40 ligand", "gene_name": "CD40LG", "position": 240 } ], "mass_pme": 2781.39, "inchi_key": "", "publication": [ { "title": "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/6426", "id": "6426", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 11, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00028MO", "name": "N-Glycan high mannose" } ], "inchi": "" }, "G19537TS": { "glytoucan_ac": "G19537TS", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_l4-m1_m6-n2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G19537TS", "id": "G19537TS", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44761_D000", "id": "carbNlink_44761_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=20742", "id": "20742", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G05328", "id": "G05328", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851344", "id": "CID91851344", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252283351", "id": "SID252283351", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3579.79, "inchi_key": "AJIQNABDTCLVTI-WONNEJKFSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](OC([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": 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"database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11996", "id": "11996", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13990", "id": "13990", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+15286", "id": "15286", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1543", "id": "1543", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16214", "id": "16214", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16415", "id": "16415", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16458", "id": "16458", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+17174", "id": "17174", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+17869", "id": "17869", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+18447", "id": "18447", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+26187", "id": "26187", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+33727", "id": "33727", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36120", "id": "36120", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+46995", "id": "46995", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+48129", "id": "48129", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5227", "id": "5227", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5433", "id": "5433", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8138", "id": "8138", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9445", "id": "9445", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9646", "id": "9646", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=603", "id": "603", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=758", "id": "758", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00195", "id": "G00195", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854761", "id": "CID91854761", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287440", "id": "SID252287440", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2062.05, "inchi_key": "JVLSRMNERKIGQG-DQGXRZEUSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@@H](O[C@@H]([C@H]2O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O[C@H]4[C@@H]([C@H]([C@@H]([C@H](O4)CO)O[C@H]5[C@@H]([C@H]([C@H]([C@H](O5)CO)O)O[C@@]6(C[C@@H]([C@H]([C@@H](O6)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O[C@H]7[C@H]([C@@H]([C@@H]([C@@H](O7)C)O)O)O)NC(=O)C)O)CO)O[C@H]8[C@H]([C@H](O[C@H]([C@@H]8O)O[C@@H]9[C@H](O[C@H]([C@@H]([C@H]9O)O)O)CO)CO)O)NC(=O)C)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpb1-", "number_monosaccharides": 9, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00065MO", "name": "VIM" }, { "id": "G00070MO", "name": "Glycosphingolipid Neo-lacto series" } ], "inchi": "InChI=1S/C63H105N3O47/c1-14-30(79)36(85)40(89)57(97-14)108-49-28(65-17(4)75)55(110-51-33(82)21(8-68)100-59(42(51)91)105-45-24(11-71)99-54(94)39(88)38(45)87)103-25(12-72)46(49)106-60-43(92)52(34(83)22(9-69)101-60)111-56-29(66-18(5)76)50(109-58-41(90)37(86)31(80)15(2)98-58)47(26(13-73)104-56)107-61-44(93)53(35(84)23(10-70)102-61)113-63(62(95)96)6-19(77)27(64-16(3)74)48(112-63)32(81)20(78)7-67/h14-15,19-61,67-73,77-94H,6-13H2,1-5H3,(H,64,74)(H,65,75)(H,66,76)(H,95,96)/t14-,15-,19-,20+,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33-,34-,35-,36+,37+,38+,39+,40-,41-,42+,43+,44+,45+,46+,47+,48+,49+,50+,51-,52-,53-,54+,55-,56-,57-,58-,59-,60-,61-,63-/m0/s1" }, "G86632ZU": { "glytoucan_ac": "G86632ZU", "mass": 2280.82, "iupac": "alpha-D-NeupAc-(2->6),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-3-1-4-5-6/a4-b1_a6-k1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_i4-j1_l2-a6|b6|c6|d6|e6|f6|g6|h6|i6|j6|k6}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(4+1)10d\\n10:10d(2+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:1o(6+1)16d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|15|16\\nSubtreeLinkageID1:o(6+2)d\\nRES\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7545", "id": "7545", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7545", "id": "7545", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P41222-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P41222/annotated", "id": "P41222", "database": "UniCarbKB" } ], "protein_name": "Prostaglandin-H2 D-isomerase", "gene_name": "PTGDS", "position": 51 }, { "uniprot_canonical_ac": "P41222-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P41222/annotated", "id": "P41222", "database": "UniCarbKB" } ], "protein_name": "Prostaglandin-H2 D-isomerase", "gene_name": "PTGDS", "position": 78 } ], "mass_pme": 2827.44, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G01817YC": { "glytoucan_ac": "G01817YC", "mass": 2775.0, "iupac": "beta-D-GalpNAc-(1->4),alpha-D-NeupAc-(2->3),alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->?)[beta-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->?)[beta-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-1-2-3-1-4-1-3-1-5-4-6-6-7/a4-b1_a6-j1_b4-c1_e4-f1_k3-l2_k1-a4|b4|c4|d4|e4|f4|g4|h4|i4|j4}_m2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3}_n1-a4|b4|c4|d4|e4|f4|g4|h4|i4|j4}_c?-d1_c?-h1_d?-e1_d?-g1_h?-i1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(-1+1)6d\\n6:6o(-1+1)7d\\n7:7d(2+1)8n\\n8:5o(-1+1)9d\\n9:9o(-1+1)10d\\n10:10d(2+1)11n\\n11:9o(-1+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:1o(6+1)15d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|14|15\\nSubtreeLinkageID1:o(4+1)d\\nRES\\n16b:b-dgal-HEX-1:5\\n17s:n-acetyl\\nLIN\\n15:16d(2+1)17n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|14|15\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n18b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n19s:n-acetyl\\nLIN\\n16:18d(5+1)19n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|14|15\\nSubtreeLinkageID1:o(4+1)d\\nRES\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n17:20o(3+2)21d\\n18:21d(5+1)22n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7152", "id": "7152", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7152", "id": "7152", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P40225-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P40225/annotated", "id": "P40225", "database": "UniCarbKB" } ], "protein_name": "Thrombopoietin", "gene_name": "THPO", "position": 197 } ], "mass_pme": 3433.74, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G42912TT": { "glytoucan_ac": "G42912TT", "mass": 871.27, "iupac": "beta-D-GlcpNAc-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc6S-(1->6)]-D-GalNAc(?->", "wurcs": "WURCS=2.0/4,4,3/[h2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][a2112h-1b_1-5]/1-2-3-4/a3-b1_a6-c1_c4-d1", "glycoct": 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91850044", "id": "CID91850044", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252281809", "id": "SID252281809", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1067.49, "inchi_key": "MGYIYOYQVDCAKH-CJYNLOAQSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O[C@H]([C@H](CO)NC(=O)C)[C@H]([C@@H](CO[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)COS(=O)(=O)O)O[C@H]3[C@@H]([C@H]([C@H]([C@H](O3)CO)O)O)O)O)NC(=O)C)O)O)CO)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 4, "motifs": [], "inchi": "InChI=1S/C30H53N3O24S/c1-9(37)31-12(4-34)26(56-29-17(32-10(2)38)22(44)20(42)14(5-35)53-29)19(41)13(40)7-51-28-18(33-11(3)39)23(45)27(16(55-28)8-52-58(48,49)50)57-30-25(47)24(46)21(43)15(6-36)54-30/h12-30,34-36,40-47H,4-8H2,1-3H3,(H,31,37)(H,32,38)(H,33,39)(H,48,49,50)/t12-,13+,14+,15+,16+,17+,18+,19-,20+,21-,22+,23+,24-,25+,26+,27+,28+,29-,30-/m0/s1" }, "G77583AR": { "glytoucan_ac": "G77583AR", "mass": 1201.42, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)-beta-D-Manp-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,6,5/[u2122h_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-5-6/a4-b1_b3-c1_c2-d1_d4-e1_e6-f2", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dman-HEX-1:5\\n4b:a-dman-HEX-1:5\\n5b:b-dglc-HEX-1:5\\n6s:n-acetyl\\n7b:b-dgal-HEX-1:5\\n8b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n9s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3o(3+1)4d\\n4:4o(2+1)5d\\n5:5d(2+1)6n\\n6:5o(4+1)7d\\n7:7o(6+2)8d\\n8:8d(5+1)9n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G77583AR", "id": "G77583AR", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10736", "id": "10736", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12776", "id": "12776", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14501", "id": "14501", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14561", "id": "14561", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+15188", "id": "15188", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+15524", "id": "15524", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+15929", "id": "15929", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+18978", "id": "18978", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+22749", "id": "22749", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+33654", "id": "33654", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3785", "id": "3785", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4249", "id": "4249", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+970", "id": "970", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+971", "id": "971", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+972", "id": "972", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=195", "id": "195", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=248", "id": "248", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1509.77, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G97895RK": { "glytoucan_ac": "G97895RK", "mass": 2587.92, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,13,12/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_h6-i2_j2-k1_k4-l1_l3-m2", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": 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"P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4269.05, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5168", "id": "5168", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", 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"id": "G00052MO", "name": "Lewis Y" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "InChI=1S/C54H91N3O39/c1-12-26(66)33(73)37(77)50(83-12)94-44-25(57-16(5)65)49(89-21(10-62)42(44)92-54-46(36(76)29(69)18(7-59)87-54)96-51-38(78)34(74)27(67)13(2)84-51)95-45-31(71)22(90-53(40(45)80)93-43-24(56-15(4)64)47(81)85-19(8-60)30(43)70)11-82-48-23(55-14(3)63)32(72)41(20(9-61)88-48)91-52-39(79)35(75)28(68)17(6-58)86-52/h12-13,17-54,58-62,66-81H,6-11H2,1-5H3,(H,55,63)(H,56,64)(H,57,65)/t12-,13-,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27+,28-,29-,30-,31-,32+,33+,34+,35-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45-,46+,47?,48+,49-,50-,51-,52-,53-,54-/m0/s1" }, "G99952ON": { "glytoucan_ac": "G99952ON", "mass": 1868.7, "iupac": "beta-D-GlcpNAc-(1->?),beta-D-GlcpNAc-(1->?),alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": 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"CarbBank" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_46658_D000", "id": "carbNlink_46658_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbOlink_20767_D000", "id": "carbOlink_20767_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbSynthe_0765_D000", "id": "carbSynthe_0765_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2626", "id": "2626", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3429", "id": "3429", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00304", "id": "G00304", "database": "KEGG Glycan" }, { "url": 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"database": "GlyTouCan" } ], "authors": "Galili U, LaTemple DC, Radic MZ", "date": "1998", "pmid": "9583877" }, { "title": "Monoclonal antibodies that recognize the trisaccharide epitope Gal alpha 1-3Gal beta 1-4GlcNAc present on Ehrlich tumor cell membrane glycoproteins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7503969", "journal": "Histochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G27798EJ", "id": "G27798EJ", "database": "GlyTouCan" } ], "authors": "Takagaki M, Knibbs RN, Roth J, Goldstein IJ", "date": "1993", "pmid": "7503969" }, { "title": "Regulation of the expression of Gal alpha 1-3Gal beta 1-4GlcNAc glycosphingolipids in kidney.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2211651", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G27798EJ", "id": "G27798EJ", "database": "GlyTouCan" } ], "authors": "Hendricks SP, He P, Stults CL, Macher BA", "date": "1990", "pmid": "2211651" 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-6DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "InChI=1S/C56H94N4O40/c1-13-29(69)39(79)42(82)53(89-13)88-12-24-46(37(77)25(49(85)90-24)57-14(2)65)97-52-28(60-17(5)68)38(78)45(21(9-64)94-52)98-55-44(84)47(99-56-48(41(81)32(72)20(8-63)93-56)100-51-27(59-16(4)67)36(76)31(71)19(7-62)92-51)34(74)23(96-55)11-87-54-43(83)40(80)33(73)22(95-54)10-86-50-26(58-15(3)66)35(75)30(70)18(6-61)91-50/h13,18-56,61-64,69-85H,6-12H2,1-5H3,(H,57,65)(H,58,66)(H,59,67)(H,60,68)/t13-,18+,19+,20+,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40-,41-,42-,43-,44-,45+,46+,47-,48-,49+,50+,51-,52-,53+,54-,55-,56+/m0/s1" }, "G12932IO": { "glytoucan_ac": "G12932IO", "mass": 2222.78, "iupac": 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"alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1_m6-n2", "glycoct": 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"uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional 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}, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { 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"id": "SID252293476", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3595.82, "inchi_key": "RKGXLYJPGSQKQP-XPRZMJERSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@H]([C@@H]([C@@H]([C@H](O4)OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@H]([C@@H](CO)O)[C@@H]([C@H](CO)NC(=O)C)O)CO)O)O[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": 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"detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C109H180N8O80/c1-27(129)110-35(12-118)60(144)82(42(143)16-122)186-95-57(115-32(6)134)71(155)85(47(21-127)179-95)189-100-80(164)90(191-103-93(76(160)64(148)43(17-123)177-103)193-97-59(117-34(8)136)72(156)84(46(20-126)181-97)188-99-79(163)75(159)66(150)52(184-99)26-175-108(105(168)169)10-37(138)54(112-29(3)131)88(195-108)62(146)40(141)14-120)69(153)50(182-100)24-173-102-92(192-96-58(116-33(7)135)73(157)86(48(22-128)180-96)190-101-81(165)91(68(152)44(18-124)176-101)197-109(106(170)171)11-38(139)55(113-30(4)132)89(196-109)63(147)41(142)15-121)77(161)67(151)49(185-102)23-172-94-56(114-31(5)133)70(154)83(45(19-125)178-94)187-98-78(162)74(158)65(149)51(183-98)25-174-107(104(166)167)9-36(137)53(111-28(2)130)87(194-107)61(145)39(140)13-119/h35-103,118-128,137-165H,9-26H2,1-8H3,(H,110,129)(H,111,130)(H,112,131)(H,113,132)(H,114,133)(H,115,134)(H,116,135)(H,117,136)(H,166,167)(H,168,169)(H,170,171)/t35-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65-,66-,67+,68-,69+,70+,71+,72+,73+,74-,75-,76-,77-,78+,79+,80-,81+,82+,83+,84+,85+,86+,87+,88+,89+,90-,91-,92-,93-,94+,95-,96-,97-,98-,99-,100-,101-,102-,103+,107+,108+,109-/m0/s1" }, "G55143WF": { "glytoucan_ac": "G55143WF", "mass": 1558.54, "iupac": "alpha-D-Manp-(1->2)[alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/3,9,8/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_d6-f1_g3-h1_g6-i1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:a-dman-HEX-1:5\\n9b:a-dman-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:6o(6+1)8d\\n8:5o(6+1)9d\\n9:9o(3+1)10d\\n10:9o(6+1)11d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=high-mannose_N-glycan&jump_to_nav=true", "name": "high mannose" }, "type": { "url": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n\\n17:1o(6+1)18d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G59655SA", "id": "G59655SA", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" }, { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1957", "id": "1957", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase 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"publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4821", "id": "4821", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 11, "name": "Hexose" }, { "residue": "hexnac", "count": 11, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 24, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G54410JV": { "glytoucan_ac": "G54410JV", "mass": 748.27, "iupac": "beta-D-Galp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->?)]-beta-D-GalpNAc(1->", "wurcs": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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{ "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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"rxn.Q9BT22-1", "detachedby": "", "id": "N20", "parentid": "N4", "name": "N-glycan_a-D-Manp_20" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 11, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGlcpa1-2DGlcpa1-3DGlcpa1-3DManpa1-2DManpa1-2[DManpa1-6]DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00028MO", "name": "N-Glycan high mannose" } ], "inchi": 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"detachedby": "", "id": "NE35", "parentid": "NC", "name": "N-glycan_b-D-Manp_E35" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DManpa1-2DManpa1-3[DManpb1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 6, "motifs": [], "inchi": 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"protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27303", "id": "27303", "database": "CarbBank" }, { "url": "xxx/yyy/GOG209", "id": "GOG209", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8153", "id": "8153", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3256", "id": "3256", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12718", "id": "12718", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24102", "id": "24102", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10974", "id": "G10974", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846206", "id": "CID91846206", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277236", "id": "SID252277236", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4203.11, "inchi_key": "YQXKOTUGNIFPOO-KPYQADQFSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1749", "id": "1749", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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III. A hybridoma antibody (FH6) defining a human cancer-associated difucoganglioside (VI3NeuAcV3III3Fuc2nLc6).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6469974", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00054MO", "id": "G00054MO", "database": "GlyTouCan" } ], "authors": "Fukushi Y, Nudelman E, Levery SB, Hakomori S, Rauvala H", "date": "1984", "pmid": "6469974" }, { "title": "Characterization of sialosylated Lewisx as a new tumor-associated antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6386148", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00054MO", "id": "G00054MO", "database": "GlyTouCan" } ], "authors": "Fukushima K, Hirota M, Terasaki PI, Wakisaka A, Togashi H, Chia D, Suyama N, Fukushi Y, Nudelman E, Hakomori S", "date": "1984", "pmid": "6386148" } ], "smiles_isomeric": 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}, "G66964CR": { "glytoucan_ac": "G66964CR", "mass": 2881.03, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j6-k2_l4-m1_m3-n2", "glycoct": 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"classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"url": "http://unicarbkb.org/proteinsummary/P09466/annotated", "id": "P09466", "database": "UniCarbKB" } ], "protein_name": "Glycodelin", "gene_name": "PAEP", "position": 46 } ], "mass_pme": 2367.19, "inchi_key": "", "publication": [ { "title": "Structural analysis of the oligosaccharides derived from glycodelin, a human glycoprotein with potent immunosuppressive and contraceptive activities.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7592613", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5664", "id": "5664", "database": "UniCarbKB" } ], "authors": "Dell A, Morris HR, Easton RL, Panico M, Patankar M, Oehniger S, Koistinen R, Koistinen H, Seppala M, Clark GF", "date": "1995", "pmid": "7592613" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, 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hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7573", "id": "7573", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 10, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G24875YE": { 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Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7439", "id": "7439", "database": "UniCarbKB" } ], "authors": "Loos A, Gruber C, Altmann F, Mehofer U, Hensel F, Grandits M, Oostenbrink C, Stadlmayr G, Furtmuller PG, Steinkellner H", "date": "2014", "pmid": "24706782" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G36264SN": { "glytoucan_ac": "G36264SN", "mass": 1202.44, "iupac": 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"inchi": "" }, "G51793MY": { "glytoucan_ac": "G51793MY", "mass": 2222.78, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_i4-j1_j6-k2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1245", "id": "1245", "database": "UniCarbKB" } ], "taxid": 10116, "name": "Rattus norvegicus" }, { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1245", "id": "1245", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 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"https://www.ebi.ac.uk/chebi/searchId.do?chebiId=71646", "id": "71646", "database": "ChEBI" }, { "url": "xxx/yyy/GOG347", "id": "GOG347", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13610", "id": "13610", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1050", "id": "1050", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23852", "id": "23852", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID70698328", "id": "CID70698328", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252290644", "id": "SID252290644", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1245", "id": "1245", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P12346-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P12346/annotated", "id": "P12346", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "", "position": 512 }, { "uniprot_canonical_ac": "Q03626-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/Q03626/annotated", "id": "Q03626", "database": "UniCarbKB" } ], "protein_name": "Murinoglobulin-1", "gene_name": "", "position": 393 }, { "uniprot_canonical_ac": "P02743-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02743/annotated", "id": "P02743", "database": "UniCarbKB" } ], "protein_name": "Serum amyloid P-component", "gene_name": "APCS", "position": 51 } ], "mass_pme": 2769.39, "inchi_key": "QVICFDLBUMXOPD-LEBUUVDNSA-N", "publication": [ { "title": "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24090084", "journal": "Journal of proteome research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1245", "id": "1245", "database": "UniCarbKB" } ], "authors": "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "date": "2013", "pmid": "24090084" }, { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous glycostructure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8202534", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1245", "id": "1245", "database": "UniCarbKB" } ], "authors": "Pepys MB, Rademacher TW, Amatayakul-Chantler S, Williams P, Noble GE, Hutchinson WL, Hawkins PN, Nelson SR, Gallimore JR, Herbert J, et al.", "date": "1994", "pmid": "8202534" }, { "title": "Carbohydrate microheterogeneity of rat serotransferrin. Determination of glycan primary structures and characterization of a new type of trisialylated diantennary glycan.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1997323", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1245", "id": "1245", "database": "UniCarbKB" } ], "authors": "Spik G, Coddeville B, Strecker G, Montreuil J, Regoeczi E, Chindemi PA, Rudolph JR", "date": "1991", "pmid": "1997323" } ], "smiles_isomeric": 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"name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { 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"complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2011", "id": "2011", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/151", "id": "151", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/2011", "id": "2011", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 4594.29, "inchi_key": "", "publication": [ { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2011", "id": "2011", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2011", "id": "2011", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2011", "id": "2011", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 1, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" 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"B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q766D5-1", "gene": "B4galnt4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG487", "id": "GOG487", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14085", "id": "14085", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25469", "id": "25469", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859792", "id": "CID91859792", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252293454", "id": "SID252293454", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4605.31, "inchi_key": "FPPVJPLWTPDYBZ-RGYZTUSRSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N30", "parentid": "N5", "name": "N-glycan_b-D-GalpNAc_30" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N70", "parentid": "N30", "name": "N-glycan_a-D-Neup5Ac_70" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpNAcb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4269.05, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5166", "id": "5166", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 4, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4]DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", 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{ "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N18", "parentid": "N7", "name": "N-glycan_a-L-Fucp_18" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", 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"inchi_key": "BCNSNFMYBHXXEU-QLIAQFQHSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H](C(O2)O)NC(=O)C)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00036MO", "name": "O-Glycan core 3 fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], 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"https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" }, { "title": "N-linked sugar chain structure of recombinant human lymphotoxin produced by CHO cells: the functional role of carbohydrate as to its lectin-like character and clearance velocity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8323280", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Fukushima K, Watanabe H, Takeo K, Nomura M, Asahi T, Yamashita K", "date": "1993", "pmid": "8323280" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1388166", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1659", "id": "1659", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": 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"gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { 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"name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12096", "id": "12096", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+17140", "id": "17140", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+17350", "id": "17350", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+47966", "id": "47966", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7130", "id": "7130", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9106", "id": "9106", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1673", "id": "1673", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2069", "id": "2069", "database": "Glycosciences.de" } ], "glycoprotein": [], 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"alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,18,17/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m6-n2_o4-p1_p6-q2", "glycoct": 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"Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", 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"gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7983", "id": "7983", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9800", "id": "9800", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15706", "id": "15706", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91850737", "id": "CID91850737", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252282637", "id": "SID252282637", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4580.31, "inchi_key": "WCUGJZQIVQWSMO-QWXSYGPPSA-N", "publication": [], "smiles_isomeric": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4218.94, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5172", "id": "5172", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", 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"id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N62", "parentid": "N3", "name": "N-glycan_b-D-GlcpNAc_62" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N63", "parentid": "N62", "name": "N-glycan_b-D-Galp_63" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N45", "parentid": "N6", "name": "N-glycan_b-D-Galp_45" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" 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"evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G19763QB", "id": "G19763QB", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q2TAA5-1", "gene": "ALG11", "gene_link": "", "protein_name": "GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9BV10-1", "gene": "ALG12", "gene_link": "", "protein_name": "Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", 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"beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-1-2-3-1-4-1-5-3-1-4/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_j4-k1", "glycoct": 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"gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23517", "id": "23517", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858011", "id": "CID91858011", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291329", "id": "SID252291329", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2578.33, "inchi_key": "JSDFVASEESRIAB-GMMLSQOUSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)NC(=O)C)O)NC(=O)C)O)O[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N30", "parentid": "N5", "name": "N-glycan_b-D-GalpNAc_30" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpNAcb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": 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"beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,16,15/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-4-2-5-2-5-2-5-6/a4-b1_a6-p1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i4-l1_i6-n1_j4-k1_l4-m1_n4-o1", "glycoct": 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[ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", 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"InChI=1S/C110H185N7O80/c1-25-55(139)69(153)75(159)102(171-25)168-22-34(138)84(56(140)33(9-118)111-26(2)131)186-97-50(113-28(4)133)64(148)90(45(20-129)178-97)194-108-83(167)93(195-110-95(197-101-54(117-32(8)137)68(152)89(44(19-128)182-101)193-107-80(164)74(158)61(145)39(14-123)176-107)81(165)91(46(21-130)183-110)187-98-51(114-29(5)134)65(149)86(41(16-125)179-98)190-104-77(161)71(155)58(142)36(11-120)173-104)62(146)47(184-108)23-170-109-94(196-100-53(116-31(7)136)67(151)88(43(18-127)181-100)192-106-79(163)73(157)60(144)38(13-122)175-106)82(166)92(188-99-52(115-30(6)135)66(150)87(42(17-126)180-99)191-105-78(162)72(156)59(143)37(12-121)174-105)48(185-109)24-169-96-49(112-27(3)132)63(147)85(40(15-124)177-96)189-103-76(160)70(154)57(141)35(10-119)172-103/h25,33-110,118-130,138-167H,9-24H2,1-8H3,(H,111,131)(H,112,132)(H,113,133)(H,114,134)(H,115,135)(H,116,136)(H,117,137)/t25-,33-,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57-,58-,59-,60-,61-,62+,63+,64+,65+,66+,67+,68+,69+,70-,71-,72-,73-,74-,75-,76+,77+,78+,79+,80+,81-,82-,83-,84+,85+,86+,87+,88+,89+,90+,91+,92+,93-,94-,95-,96+,97-,98-,99-,100-,101-,102+,103-,104-,105-,106-,107-,108-,109-,110+/m0/s1" 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+6782", "id": "6782", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7170", "id": "7170", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1040", "id": "1040", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1302", "id": "1302", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2058.06, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", 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"RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dman-HEX-1:5\\n4b:a-dman-HEX-1:5\\n5b:b-dglc-HEX-1:5\\n6s:n-acetyl\\n7b:b-dgal-HEX-1:5\\n8b:b-dglc-HEX-1:5\\n9s:n-acetyl\\n10b:b-dgal-HEX-1:5\\n11b:a-dman-HEX-1:5\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3o(3+1)4d\\n4:4o(2+1)5d\\n5:5d(2+1)6n\\n6:5o(4+1)7d\\n7:7o(3+1)8d\\n8:8d(2+1)9n\\n9:8o(4+1)10d\\n10:3o(6+1)11d\\n11:11o(2+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+1)15d\\n15:15d(2+1)16n\\n16:15o(4+1)17d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G27744SG", "id": "G27744SG", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+20292", "id": "20292", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+49624", "id": "49624", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=15883", "id": "15883", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2700.37, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G12438DW": { "glytoucan_ac": "G12438DW", "mass": 3027.08, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,16,15/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-2-5-2-5-2-5/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j3-k1_k4-l1_l3-m1_m4-n1_n3-o1_o4-p1", "glycoct": 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"name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_43906_D000", "id": "carbNlink_43906_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=32383", "id": "32383", "database": "GlycomeDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91847769", "id": "CID91847769", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279131", "id": "SID252279131", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3755.9, "inchi_key": "IZYXCXJDLVADHP-SFOKWFLPSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](OC([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)NC(=O)C)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "InChI=1S/C115H190N8O84/c1-26(138)116-51-34(146)9-115(114(175)176,207-92(51)59(148)35(147)10-124)178-25-50-63(152)76(165)80(169)107(193-50)196-87-44(19-133)191-105(58(73(87)162)123-33(8)145)206-98-78(167)62(151)38(13-127)185-113(98)204-96-67(156)49(192-111(84(96)173)200-91-45(20-134)186-100(53(69(91)158)118-28(3)140)194-85-42(17-131)179-99(174)52(68(85)157)117-27(2)139)24-177-112-97(77(166)61(150)37(12-126)184-112)205-104-57(122-32(7)144)74(163)90(48(23-137)190-104)199-110-83(172)95(66(155)41(16-130)183-110)203-103-56(121-31(6)143)72(161)89(47(22-136)189-103)198-109-82(171)94(65(154)40(15-129)182-109)202-102-55(120-30(5)142)71(160)88(46(21-135)188-102)197-108-81(170)93(64(153)39(14-128)181-108)201-101-54(119-29(4)141)70(159)86(43(18-132)187-101)195-106-79(168)75(164)60(149)36(11-125)180-106/h34-113,124-137,146-174H,9-25H2,1-8H3,(H,116,138)(H,117,139)(H,118,140)(H,119,141)(H,120,142)(H,121,143)(H,122,144)(H,123,145)(H,175,176)/t34-,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60-,61+,62+,63-,64-,65-,66-,67+,68+,69+,70+,71+,72+,73+,74+,75-,76-,77-,78-,79+,80+,81+,82+,83+,84-,85+,86+,87+,88+,89+,90+,91+,92+,93-,94-,95-,96-,97-,98-,99?,100-,101-,102-,103-,104-,105-,106-,107-,108-,109-,110-,111-,112-,113+,115+/m0/s1" }, "G66576RC": { "glytoucan_ac": "G66576RC", "mass": 1412.44, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc6S-(1->6)-beta-D-Galp-(1->3)[alpha-D-NeupAc-(2->6)]-D-GalNAc(?->", "wurcs": "WURCS=2.0/4,6,5/[h2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O_6*OSO/3=O/3=O][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-2-4-4/a3-b1_a6-f2_b6-c1_c4-d1_d6-e2", "glycoct": "RES\\n1b:o-dgal-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dgal-HEX-1:5\\n4b:b-dglc-HEX-1:5\\n5s:n-acetyl\\n6b:b-dgal-HEX-1:5\\n7b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n8s:n-acetyl\\n9s:sulfate\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:3o(6+1)4d\\n4:4d(2+1)5n\\n5:4o(4+1)6d\\n6:6o(6+2)7d\\n7:7d(5+1)8n\\n8:4o(6+1)9n\\n9:1o(6+2)10d\\n10:10d(5+1)11n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G66576RC", "id": "G66576RC", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+33365", "id": "33365", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10976", "id": "10976", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=17387", "id": "17387", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861854", "id": "CID91861854", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295926", "id": "SID252295926", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1748.81, "inchi_key": "CARPGOZPVRPIJE-KQTOAACFSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@@H]([C@@H]([C@H]([C@@H](O4)O[C@H]([C@H](CO)NC(=O)C)[C@H]([C@@H](CO[C@@]5(C[C@@H]([C@H]([C@@H](O5)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)O)COS(=O)(=O)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [], "inchi": "InChI=1S/C50H84N4O40S/c1-14(58)51-18(7-55)40(32(69)23(66)10-85-49(47(77)78)5-19(62)27(52-15(2)59)42(93-49)30(67)21(64)8-56)91-45-38(75)36(73)33(70)24(88-45)11-84-44-29(54-17(4)61)35(72)41(26(90-44)13-87-95(81,82)83)92-46-39(76)37(74)34(71)25(89-46)12-86-50(48(79)80)6-20(63)28(53-16(3)60)43(94-50)31(68)22(65)9-57/h18-46,55-57,62-76H,5-13H2,1-4H3,(H,51,58)(H,52,59)(H,53,60)(H,54,61)(H,77,78)(H,79,80)(H,81,82,83)/t18-,19-,20-,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32-,33-,34-,35+,36-,37-,38+,39+,40+,41+,42+,43+,44+,45-,46-,49+,50+/m0/s1" }, "G24131KD": { "glytoucan_ac": "G24131KD", "mass": 2790.99, "iupac": "?-D-NeupAc-(2->?),?-D-NeupAc-(2->?),beta-D-GlcpNAc-(1->4)?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3/6)[?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3/6)]-beta-D-Manp-(1->]", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O]/1-1-2-3-4-5-4-5-3-4-5-1-6-6/a4-b1_b4-c1_c4-l1_d1-c3|c6_i1-c3|c6_d?-e1_d?-g1_e?-f1_g?-h1_i?-j1_j?-k1_m2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?}_n2-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:x-dglc-HEX-1:5\\n15b:x-dgal-HEX-1:5\\n16s:n-acetyl\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(3|6+1)13d\\n13:13o(-1+1)14d\\n14:14o(-1+1)15d\\n15:14d(2+1)16n\\n16:5o(4+1)17d\\n17:17d(2+1)18n\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n19b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n20s:n-acetyl\\nLIN\\n18:19d(5+1)20n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15|17\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n21b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n19:21d(5+1)22n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7411", "id": "7411", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7411", "id": "7411", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 } ], "mass_pme": 3463.75, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G34216YN": { "glytoucan_ac": "G34216YN", "mass": 2039.76, "iupac": "alpha-D-Galp-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->?)[alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->?)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/5,12,11/[h2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][a2112h-1a_1-5]/1-2-3-2-3-4-2-4-5-3-2-4/a4-b1_b3-c1_c4-d1_e3-f1_e4-g1_g2-h1_g3-i1_j4-k1_k2-l1_d?-e1_d?-j1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dgal-HEX-1:5\\n6b:b-dglc-HEX-1:5\\n7s:n-acetyl\\n8b:a-lgal-HEX-1:5|6:d\\n9b:b-dgal-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\n11b:a-dgal-HEX-1:5\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(-1+1)6d\\n6:6d(2+1)7n\\n7:6o(3+1)8d\\n8:6o(4+1)9d\\n9:9o(2+1)10d\\n10:9o(3+1)11d\\n11:5o(-1+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(2+1)15d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G34216YN", "id": "G34216YN", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+21005", "id": "21005", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=36020", "id": "36020", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2544.32, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00052MO", "name": "Lewis Y" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G40200RC": { "glytoucan_ac": "G40200RC", "mass": 1640.59, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,9,8/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-4-2-5/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g6-h1_h4-i1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(6+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G40200RC", "id": "G40200RC", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+6684", "id": "6684", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10456", "id": "10456", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16597", "id": "16597", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2047.05, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G86414TE": { "glytoucan_ac": "G86414TE", "mass": 3392.22, "iupac": "alpha-D-NeupAc-(2->3/6),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,18,17/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-2-5-4-2-5-2-5-2-5-2-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-n1_j4-k1_k3-l1_l4-m1_n4-o1_o3-p1_p4-q1_r1-f3|f6|h3|h6|m3|m6|q3|q6}", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\n20b:b-dglc-HEX-1:5\\n21s:n-acetyl\\n22b:b-dgal-HEX-1:5\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:16o(3+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d\\n19:13o(6+1)20d\\n20:20d(2+1)21n\\n21:20o(4+1)22d\\n22:22o(3+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\nUND\\nUND1:100.0:100.0\\nParentIDs:9|12|19|25\\nSubtreeLinkageID1:o(3|6+1)d\\nRES\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n25:26d(5+1)27n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G86414TE", "id": "G86414TE", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21354_P", "id": "carbNlink_21354_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28931", "id": "28931", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 4205.12, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 8, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G71063DT": { "glytoucan_ac": "G71063DT", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,18,17/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k4-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\n28b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n\\n22:17o(4+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n\\n27:1o(6+1)28d", 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"G96570OI", "mass": 1318.5, "iupac": "beta-D-GlcpNAc-(1->4)-alpha-D-Manp-(1->3)[beta-D-GlcpNAc-(1->6)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/4,7,6/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-2-3-4-2-4-2/a4-b1_b4-c1_c3-d1_c6-f1_d4-e1_f6-g1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(4+1)7d\\n7:7d(2+1)8n\\n8:5o(6+1)9d\\n9:9o(6+1)10d\\n10:10d(2+1)11n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G96570OI", "id": "G96570OI", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], 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"parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [], "inchi": 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}, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858184", "id": "CID91858184", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291529", "id": "SID252291529", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/4924", "id": "4924", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 762 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 358 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": 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A study employing 500-MHz 1H-NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7096333", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4924", "id": "4924", "database": "UniCarbKB" } ], "authors": "Endo M, Suzuki K, Schmid K, Fournet B, Karamanos Y, Montreuil J, Dorland L, van Halbeek H, Vliegenthart JF", "date": "1982", "pmid": "7096333" }, { "title": "Structural studies of asparagine-linked sugar chains of human ceruloplasmin. 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"id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" } ], "inchi": "InChI=1S/C56H94N4O40/c1-13-29(70)39(80)42(83)53(88-13)86-12-24-45(37(78)25(49(85)89-24)57-14(2)66)96-52-28(60-17(5)69)38(79)44(22(10-65)94-52)97-54-43(84)46(98-56-48(41(82)33(74)21(9-64)93-56)100-51-27(59-16(4)68)36(77)31(72)19(7-62)91-51)34(75)23(95-54)11-87-55-47(40(81)32(73)20(8-63)92-55)99-50-26(58-15(3)67)35(76)30(71)18(6-61)90-50/h13,18-56,61-65,70-85H,6-12H2,1-5H3,(H,57,66)(H,58,67)(H,59,68)(H,60,69)/t13-,18+,19+,20+,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40-,41-,42-,43-,44+,45+,46-,47-,48-,49+,50-,51-,52-,53-,54-,55-,56+/m0/s1" }, "G06820QR": { "glytoucan_ac": "G06820QR", "mass": 2969.04, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupGc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][Aad21122h-2a_2-6_5*NCCO/3=O]/1-1-2-3-1-4-5-1-4-3-1-4-6-1-4/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_j2-k1_j6-n1_k4-l1_l6-m2_n4-o1", "glycoct": 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"complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 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"LRPKYKSKMWSZFJ-FLPWSBJNSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)CO)O)C(=O)O)O)O)O)O)NC(=O)C)O)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N49", "parentid": "N6", "name": "N-glycan_a-D-Neup5Gc_49" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 1, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, 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"protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 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"uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG261", "id": "GOG261", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13321", "id": "13321", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/902", "id": "902", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23054", "id": "23054", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91847955", "id": "CID91847955", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279351", "id": "SID252279351", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1729", "id": "1729", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01229-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01229/annotated", "id": "P01229", "database": "UniCarbKB" } ], "protein_name": "Lutropin subunit beta", "gene_name": "LHB", "position": 50 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 102 }, { "uniprot_canonical_ac": "P01215-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01215/annotated", "id": "P01215", "database": "UniCarbKB" } ], "protein_name": "Glycoprotein hormones alpha chain", "gene_name": "CGA", "position": 76 } ], "mass_pme": 3014.52, "inchi_key": "WKYJXPFJBOQCCU-PAVJLPTOSA-N", "publication": [ { "title": "Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9449027", 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"id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N74", "parentid": "N9", "name": "N-glycan_b-D-GalpNAc_74" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N96", "parentid": "N74", "name": "N-glycan_a-D-Neup5Ac_96" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpNAcb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1315", "id": "1315", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1315", "id": "1315", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by 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"UniCarbKB" } ], "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "position": 37 }, { "uniprot_canonical_ac": "P07359-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07359/annotated", "id": "P07359", "database": "UniCarbKB" } ], "protein_name": "Platelet glycoprotein Ib alpha chain", "gene_name": "GP1BA", "position": 175 } ], "mass_pme": 3392.71, "inchi_key": "", "publication": [ { "title": "The carbohydrate moiety of human platelet glycocalicin: the structures of the major Asn-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3571205", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1693", "id": "1693", "database": "UniCarbKB" } ], "authors": "Tsuji T, Osawa T", "date": "1987", "pmid": "3571205" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": 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"DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4[DGalpb1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G09176OA": { "glytoucan_ac": "G09176OA", "mass": 1421.52, "iupac": "?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->?)[alpha-D-Manp-(1->?)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[?-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][a1221m-1x_1-5]/1-1-2-3-4-5-3-6/a4-b1_a6-h1_b4-c1_c?-d1_c?-g1_d?-e1_e?-f1", "glycoct": 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"https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4787", "id": "4787", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G98961TI": { "glytoucan_ac": "G98961TI", "mass": 2645.96, "iupac": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=14563", "id": "14563", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26093", "id": "26093", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853249", "id": "CID91853249", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285629", "id": "SID252285629", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "DFZSSAHVRKOWPI-ZUWAMQJISA-N", "publication": [], "smiles_isomeric": 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"no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG104", "id": "GOG104", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14631", "id": "14631", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26161", "id": "26161", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855688", "id": "CID91855688", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288558", "id": "SID252288558", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "FUKYNZAODBVPHZ-DTFMWFGQSA-N", "publication": [], "smiles_isomeric": 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}, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C134H218N10O98/c1-32(158)135-63-42(168)11-131(127(202)203,237-105(63)73(176)46(172)15-145)212-30-61-77(180)89(192)92(195)120(224-61)229-99-53(22-152)217-115(68(84(99)187)140-37(6)163)210-28-59-79(182)91(194)112(235-118-71(143-40(9)166)87(190)100(54(23-153)220-118)230-121-93(196)90(193)78(181)62(225-121)31-213-132(128(204)205)12-43(169)64(136-33(2)159)106(238-132)74(177)47(173)16-146)125(226-59)211-29-60-82(185)109(95(198)122(223-60)231-101-55(24-154)218-116(69(85(101)188)141-38(7)164)227-98-52(21-151)214-114(201)67(83(98)186)139-36(5)162)234-126-113(236-119-72(144-41(10)167)88(191)103(57(26-156)221-119)233-124-97(200)111(81(184)51(20-150)216-124)242-134(130(208)209)14-45(171)66(138-35(4)161)108(240-134)76(179)49(175)18-148)94(197)104(58(27-157)222-126)228-117-70(142-39(8)165)86(189)102(56(25-155)219-117)232-123-96(199)110(80(183)50(19-149)215-123)241-133(129(206)207)13-44(170)65(137-34(3)160)107(239-133)75(178)48(174)17-147/h42-126,145-157,168-201H,11-31H2,1-10H3,(H,135,158)(H,136,159)(H,137,160)(H,138,161)(H,139,162)(H,140,163)(H,141,164)(H,142,165)(H,143,166)(H,144,167)(H,202,203)(H,204,205)(H,206,207)(H,208,209)/t42-,43-,44-,45-,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77-,78-,79+,80-,81-,82+,83+,84+,85+,86+,87+,88+,89-,90-,91-,92+,93+,94-,95-,96+,97+,98+,99+,100+,101+,102+,103+,104+,105+,106+,107+,108+,109-,110-,111-,112-,113-,114+,115+,116-,117-,118-,119-,120-,121-,122-,123-,124-,125-,126+,131+,132+,133-,134-/m0/s1" }, "G89285QP": { "glytoucan_ac": "G89285QP", "mass": 1868.7, "iupac": "beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,10,9/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+25698", "id": "25698", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28604", "id": "28604", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+47650", "id": "47650", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7153", "id": "7153", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7154", "id": "7154", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1472", "id": "1472", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1786", "id": "1786", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 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"WURCS=2.0/4,5,4/[a2122h-1b_1-5][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5_2*NCC/3=O]/1-2-3-2-4/a4-b1_b3-c1_c4-d1_d3-e1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dgal-HEX-1:5\\n6b:b-dgal-HEX-1:5\\n7s:n-acetyl\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6d(2+1)7n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G32252UW", "id": "G32252UW", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "http://csdb.glycoscience.ru/bacterial/core/search_id.php?mode=record&id_list=7245", "id": "7245", "database": "BCSDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+17357", "id": "17357", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+26394", "id": "26394", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+34173", "id": "34173", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4652", "id": "4652", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+48438", "id": "48438", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+691", "id": "691", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+692", "id": "692", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+693", "id": "693", "database": "CarbBank" }, { "url": "xxx/yyy/GOG1019", "id": "GOG1019", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2079", "id": "2079", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=18384", "id": "18384", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2687", "id": "2687", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00889", "id": "G00889", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846456", "id": "CID91846456", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277538", "id": "SID252277538", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1148.59, "inchi_key": "DCAVQKLDEURSGU-VFABZGIFSA-N", "publication": [ { "title": "Neisseria gonorrhoeae that infect men have lipooligosaccharides with terminal N-acetyllactosamine repeats.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9873046", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G32252UW", "id": "G32252UW", "database": "GlyTouCan" } ], "authors": "John CM, Schneider H, Griffiss 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"database": "UniCarbDB" } ], "glycoprotein": [], "mass_pme": 1134.61, "inchi_key": "CGXZJABXOYFMHH-BYRCWZQMSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@H]([C@H](CO)NC(=O)C)[C@H]([C@@H](CO[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)O)NC(=O)C)O)O)CO)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": 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"uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { 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"Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": 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"CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7477", "id": "7477", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1150", "id": "1150", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1416", "id": "1416", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=6638", "id": "6638", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861867", "id": "CID91861867", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295943", "id": "SID252295943", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3135.62, "inchi_key": "OBMTZXYCQNBQCK-FIKNGWROSA-N", "publication": [], "smiles_isomeric": 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"classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=core-2_O-glycan&jump_to_nav=true", "name": "core 2" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=O-glycan&jump_to_nav=true", "name": "O-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbOlink_20538_D000", "id": "carbOlink_20538_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=21719", "id": "21719", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G06675", "id": "G06675", "database": "KEGG Glycan" } ], "glycoprotein": [], "mass_pme": 1101.57, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": 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erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1199", "id": "1199", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1199", "id": "1199", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": 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"N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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}, "G00743WU": { "glytoucan_ac": "G00743WU", "mass": 2159.8, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-6/a4-b1_a6-k1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": 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"database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14077", "id": "14077", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/360", "id": "360", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25461", "id": "25461", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91849248", "id": "CID91849248", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252280881", "id": "SID252280881", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1127", "id": "1127", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2664.36, "inchi_key": "WTHBHGPAZKVTEO-WUQKALNDSA-N", "publication": [], "smiles_isomeric": 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"N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N69", "parentid": "N29", "name": "N-glycan_a-D-Neup5Ac_69" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N30", "parentid": "N5", "name": "N-glycan_b-D-GalpNAc_30" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+1084", "id": "1084", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14207", "id": "14207", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8670", "id": "8670", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9210", "id": "9210", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9792", "id": "9792", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=238", "id": "238", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=292", "id": "292", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1311.67, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [], "inchi": "" }, "G80759CD": { "glytoucan_ac": "G80759CD", "mass": 2280.82, "iupac": "alpha-D-NeupAc-(2->3),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-3-1-4-5-6/a4-b1_a6-k1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_i4-j1_l2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(4+1)10d\\n10:10d(2+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:1o(6+1)16d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|15|16\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7864", "id": "7864", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n13s:n-acetyl\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\n18b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n19s:n-acetyl\\n20b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n21s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:7o(6+2)12d\\n12:12d(5+1)13n\\n13:5o(6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(3+1)17d\\n17:17o(3+2)18d\\n18:18d(5+1)19n\\n19:15o(6+2)20d\\n20:20d(5+1)21n", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { 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N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13844", "id": "13844", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2958", "id": "2958", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24784", "id": "24784", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846968", "id": "CID91846968", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252278147", "id": "SID252278147", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1619", "id": "1619", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3491.74, "inchi_key": "XSCOVMNQWBQLKK-YJOMHJPGSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O[C@H]3[C@H]([C@@H]([C@H](O[C@@H]3OC[C@@H]4[C@H]([C@@H]([C@@H]([C@@H](O4)O[C@@H]5[C@H](O[C@H]([C@@H]([C@H]5O)NC(=O)C)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O)CO)CO)O)O[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO[C@@]9(C[C@@H]([C@H]([C@@H](O9)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)NC(=O)C)O)CO)O)O)NC(=O)C)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", 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"rxn.Q9BT22-1", "detachedby": "", "id": "N101", "parentid": "N86", "name": "N-glycan_a-D-Neup5Ac_101" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE55", "parentid": "N5", "name": "N-glycan_a-D-Neu5Acp_E55" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:13o(6+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { 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"protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": 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}, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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"16448", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24335", "id": "24335", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2720", "id": "2720", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=2120", "id": "2120", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2737", "id": "2737", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1438.73, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00070MO", "name": "Glycosphingolipid Neo-lacto series" } ], "inchi": "" }, "G39465KG": { "glytoucan_ac": "G39465KG", "mass": 2648.99, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,15,14/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-6-5-2-6-5-6/a4-b1_a6-o1_b4-c1_c3-d1_c4-g1_c6-h1_d2-e1_e4-f1_h2-i1_h6-l1_i3-j1_i4-k1_l3-m1_l4-n1", "glycoct": 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"rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N43", "parentid": "N9", "name": "N-glycan_a-L-Fucp_43" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-1-4-5-6/a4-b1_a6-n1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_i4-j1_j3-k1_k4-l1_l3-m2", "glycoct": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": "B3GNT8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG413", "id": "GOG413", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13862", "id": "13862", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/653", "id": "653", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24807", "id": "24807", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854603", "id": "CID91854603", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287250", "id": "SID252287250", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 3392.71, "inchi_key": "BRESGMYLXGEYBJ-XILYEMRZSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1975", "id": "1975", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N61", "parentid": "N60", "name": "N-glycan_a-D-Neup5Ac_61" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": 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"DNeup5Aca2-3DGalpb1-4[LFucpa1-3]DGlcpNAcb1-4[LFucpa1-3]DGlcpNAcb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C45H75N3O32/c1-11-24(58)28(62)30(64)41(70-11)77-36-22(47-14(4)54)39(67)72-19(9-51)33(36)75-40-23(48-15(5)55)37(78-42-31(65)29(63)25(59)12(2)71-42)34(20(10-52)74-40)76-43-32(66)38(27(61)18(8-50)73-43)80-45(44(68)69)6-16(56)21(46-13(3)53)35(79-45)26(60)17(57)7-49/h11-12,16-43,49-52,56-67H,6-10H2,1-5H3,(H,46,53)(H,47,54)(H,48,55)(H,68,69)/t11-,12-,16-,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27-,28+,29+,30-,31-,32+,33+,34+,35+,36+,37+,38-,39+,40-,41-,42-,43-,45-/m0/s1" }, "G63166WT": { "glytoucan_ac": "G63166WT", "mass": 2400.83, "iupac": "alpha-D-NeupGc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupGc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-5-6/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j6-k2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-glycolyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-glycolyl\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n\\n17:1o(6+1)18d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G63166WT", "id": "G63166WT", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": 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"name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N49", "parentid": "N6", "name": "N-glycan_a-D-Neup5Gc_49" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 2, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C90H148N6O68/c1-21-47(116)59(128)64(133)81(146-21)142-18-38-71(55(124)43(77(137)147-38)91-22(2)106)156-78-44(92-23(3)107)56(125)70(34(14-103)150-78)159-84-67(136)74(160-86-76(63(132)51(120)31(11-100)149-86)162-80-46(94-25(5)109)58(127)69(33(13-102)152-80)158-83-66(135)61(130)53(122)37(155-83)20-145-90(88(140)141)7-27(111)42(96-40(115)16-105)73(164-90)49(118)29(113)9-98)54(123)35(153-84)17-143-85-75(62(131)50(119)30(10-99)148-85)161-79-45(93-24(4)108)57(126)68(32(12-101)151-79)157-82-65(134)60(129)52(121)36(154-82)19-144-89(87(138)139)6-26(110)41(95-39(114)15-104)72(163-89)48(117)28(112)8-97/h21,26-38,41-86,97-105,110-113,116-137H,6-20H2,1-5H3,(H,91,106)(H,92,107)(H,93,108)(H,94,109)(H,95,114)(H,96,115)(H,138,139)(H,140,141)/t21-,26-,27-,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52-,53-,54+,55+,56+,57+,58+,59+,60-,61-,62-,63-,64-,65+,66+,67-,68+,69+,70+,71+,72+,73+,74-,75-,76-,77+,78-,79-,80-,81+,82-,83-,84-,85-,86+,89+,90+/m0/s1" }, "G30542PN": { "glytoucan_ac": "G30542PN", "mass": 2305.86, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-GalpNAc-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-GalpNAc-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,12,11/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5_2*NCC/3=O][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-7-5-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i3-j1_i4-k1", "glycoct": 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cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Amino acid sequence and carbohydrate structure of a recombinant human tissue factor pathway inhibitor expressed in Chinese hamster ovary cells: one N-and two O-linked carbohydrate chains are located between Kunitz domains 2 and 3 and one N-linked carbohydrate chain is in Kunitz domain 2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8639592", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Nakahara Y, Miyata T, Hamuro T, Funatsu A, Miyagi M, Tsunasawa S, Kato H", "date": "1996", "pmid": "8639592" }, { "title": "N-linked sugar chain structure of recombinant human lymphotoxin produced by CHO cells: the functional role of carbohydrate as to its lectin-like character and clearance velocity.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8323280", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Fukushima K, Watanabe H, Takeo K, Nomura M, Asahi T, Yamashita K", "date": "1993", "pmid": "8323280" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "The asparagine-linked oligosaccharides on tissue factor pathway inhibitor terminate with SO4-4GalNAc beta 1, 4GlcNAc beta 1,2 Mana alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1388166", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Smith PL, Skelton TP, Fiete D, Dharmesh SM, Beranek MC, MacPhail L, Broze GJ Jr, Baenziger JU", "date": "1992", "pmid": "1388166" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1669", "id": "1669", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+5421", "id": "5421", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5423", "id": "5423", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1255", "id": "1255", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1534", "id": "1534", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3579.79, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G74026TS": { "glytoucan_ac": "G74026TS", "mass": 2370.86, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,12,11/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f3-g2_h2-i1_i4-j1_j3-k2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(3+2)16d\\n16:16d(5+1)17n\\n17:1o(6+1)18d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G74026TS", "id": "G74026TS", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" }, { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G74026TS", "id": "G74026TS", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16609", "id": "16609", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24430", "id": "24430", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G04941", "id": "G04941", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848356", "id": "CID91848356", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279836", "id": "SID252279836", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4029.02, "inchi_key": "WQDJHPZRVRYDCY-GXRZKERFSA-N", "publication": [], "smiles_isomeric": 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"NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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}, "G70490JW": { "glytoucan_ac": "G70490JW", "mass": 2376.78, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp3S-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,12,11/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a2112h-1b_1-5_3*OSO/3=O/3=O]/1-2-3-4-2-5-6-2-7-4-2-5/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_j2-k1_k4-l1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15s:sulfate\\n16b:a-dman-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+1)15n\\n15:5o(6+1)16d\\n16:16o(2+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G70490JW", "id": "G70490JW", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24949", "id": "24949", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8121", "id": "8121", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12680", "id": "12680", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2923.39, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G94232LU": { "glytoucan_ac": "G94232LU", "mass": 2340.88, "iupac": "alpha-D-GalpNAc-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)beta-D-GlcpNAc-(1->4)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,13,12/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5_2*NCC/3=O]/1-2-3-4-2-5-6-7-2-4-2-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c4-i1_c6-j1_d2-e1_e4-f1_f2-g1_f3-h1_j2-k1_k4-l1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\n11b:a-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:a-dman-HEX-1:5\\n16b:b-dglc-HEX-1:5\\n17s:n-acetyl\\n18b:b-dgal-HEX-1:5\\n19b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(2+1)10d\\n10:9o(3+1)11d\\n11:11d(2+1)12n\\n12:5o(4+1)13d\\n13:13d(2+1)14n\\n14:5o(6+1)15d\\n15:15o(2+1)16d\\n16:16d(2+1)17n\\n17:16o(4+1)18d\\n18:1o(6+1)19d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G94232LU", "id": "G94232LU", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P19526-1", "gene": "FUT1", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 1" }, { "uniprot_canonical_ac": "Q10981-1", "gene": "FUT2", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 2" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09327-1", "gene": "MGAT3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 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"Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "O09160-1", "gene": "Fut1", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 1" }, { "uniprot_canonical_ac": "Q9JL27-1", "gene": "Fut2", "gene_link": "", "protein_name": "Galactoside 2-alpha-L-fucosyltransferase 2" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 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2901.51, "inchi_key": "KUSOVLMXSXOJTN-MIBYWWIRSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O)NC(=O)C)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O)O)NC(=O)C)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N53", "parentid": "N3", "name": "N-glycan_a-L-Fucp_53" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N97", "parentid": "N3", "name": "N-glycan_a-D-GalpNAc_97" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00066MO", "name": "Blood group A" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "InChI=1S/C90H152N6O64/c1-21-46(114)60(128)65(133)84(139-21)137-19-30(113)69(48(116)29(9-97)91-23(3)107)151-81-43(94-26(6)110)57(125)71(38(17-105)147-81)153-87-68(136)75(73(155-79-41(92-24(4)108)55(123)49(117)31(10-98)141-79)40(150-87)20-138-88-76(63(131)52(120)34(13-101)144-88)158-82-44(95-27(7)111)58(126)70(37(16-104)148-82)152-86-67(135)62(130)51(119)33(12-100)143-86)157-89-77(64(132)53(121)35(14-102)145-89)159-83-45(96-28(8)112)59(127)72(39(18-106)149-83)154-90-78(160-85-66(134)61(129)47(115)22(2)140-85)74(54(122)36(15-103)146-90)156-80-42(93-25(5)109)56(124)50(118)32(11-99)142-80/h21-22,29-90,97-106,113-136H,9-20H2,1-8H3,(H,91,107)(H,92,108)(H,93,109)(H,94,110)(H,95,111)(H,96,112)/t21-,22-,29-,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50-,51-,52+,53+,54-,55+,56+,57+,58+,59+,60+,61+,62-,63-,64-,65-,66-,67+,68-,69+,70+,71+,72+,73+,74-,75+,76-,77-,78+,79-,80+,81-,82-,83-,84+,85-,86-,87-,88-,89+,90-/m0/s1" }, "G62765SF": { "glytoucan_ac": "G62765SF", "mass": 2733.97, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-1-4-5-3-1-4-6/a4-b1_a6-n1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_l4-m1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(3+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:1o(6+1)21d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": 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"Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27286", "id": "27286", "database": "CarbBank" }, { "url": "xxx/yyy/GOG200", "id": "GOG200", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8141", "id": "8141", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2006", "id": "2006", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12705", "id": "12705", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24091", "id": "24091", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10963", "id": "G10963", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91862454", "id": "CID91862454", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296666", "id": "SID252296666", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 }, { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 3392.71, "inchi_key": "FDYWIZWBODCKOR-ITLRNRJGSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1977", "id": "1977", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" 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"rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9s:n-acetyl\\n10b:x-dglc-HEX-1:5\\n11b:x-dgal-HEX-1:5\\n12s:n-acetyl\\n13b:a-dman-HEX-1:5\\n14b:x-dglc-HEX-1:5\\n15b:x-dgal-HEX-1:5\\n16s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:7d(2+1)9n\\n9:6o(-1+1)10d\\n10:10o(-1+1)11d\\n11:10d(2+1)12n\\n12:5o(3|6+1)13d\\n13:13o(-1+1)14d\\n14:14o(-1+1)15d\\n15:14d(2+1)16n\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n17b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n16:17d(5+1)18n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n19b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n20s:n-acetyl\\nLIN\\n17:19d(5+1)20n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+2)d\\nRES\\n21b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n18:21d(5+1)22n\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|8|10|11|13|14|15\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n23b:x-lgal-HEX-1:5|6:d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7409", "id": "7409", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7409", "id": "7409", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 184 }, { "uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 241 } ], "mass_pme": 3753.88, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7409", "id": "7409", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7409", "id": "7409", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7409", "id": "7409", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G33866SM": { "glytoucan_ac": "G33866SM", "mass": 953.37, "iupac": "beta-D-Galp-(1->3/4)-beta-D-GlcpNAc-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-D-GalNAc(?->", "wurcs": "WURCS=2.0/3,5,4/[h2112h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-2-3/a3-b1_a6-d1_d4-e1_c1-b3|b4", "glycoct": "RES\\n1b:o-dgal-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4b:b-dgal-HEX-1:5\\n5s:n-acetyl\\n6b:b-dglc-HEX-1:5\\n7s:n-acetyl\\n8b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:3o(3|4+1)4d\\n4:3d(2+1)5n\\n5:1o(6+1)6d\\n6:6d(2+1)7n\\n7:6o(4+1)8d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G33866SM", "id": "G33866SM", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+25797", "id": "25797", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+32370", "id": "32370", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3707", "id": "3707", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4207", "id": "4207", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4871", "id": "4871", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=7921", "id": "7921", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12446", "id": "12446", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1205.65, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic 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"G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G19607EP": { "glytoucan_ac": "G19607EP", "mass": 3535.24, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,17,16/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G19607EP", "id": "G19607EP", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24940", "id": "24940", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8125", "id": "8125", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12684", "id": "12684", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "", "publication": [], "smiles_isomeric": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=10505", "id": "10505", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16648", "id": "16648", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1060.54, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 4, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G16873YG": { "glytoucan_ac": "G16873YG", "mass": 3464.24, "iupac": 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"Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27310", "id": "27310", "database": "CarbBank" }, { "url": "xxx/yyy/GOG208", "id": "GOG208", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8152", "id": "8152", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/401", "id": "401", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12717", "id": "12717", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24101", "id": "24101", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G03787", "id": "G03787", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855314", "id": "CID91855314", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288106", "id": "SID252288106", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2671", "id": "2671", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4291.16, "inchi_key": "BJEDGUZZICFKDO-ZZHWXKEYSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2671", "id": "2671", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2671", "id": "2671", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2671", "id": "2671", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2671", "id": "2671", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/2671", "id": "2671", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": 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"parentid": "N1", "name": "N-glycan_a-D-Manp_21" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N22", "parentid": "N21", "name": "N-glycan_a-D-Manp_22" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N25", "parentid": "N22", "name": "N-glycan_a-D-Glcp_25" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N19", "parentid": "N4", "name": "N-glycan_a-D-Manp_19" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N20", "parentid": "N4", "name": "N-glycan_a-D-Manp_20" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": 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"Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P38649-1", "gene": "Abo", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { 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"attachedby": "rxn.P16442-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N52", "parentid": "N3", "name": "N-glycan_a-D-Galp_52" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N83", "parentid": "N60", "name": "N-glycan_a-D-Galp_83" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": 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"residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/5179", "id": "5179", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2210", "id": "2210", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5179", "id": "5179", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 4464.07, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5179", "id": "5179", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5179", "id": "5179", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 8, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DGalp[3S]b1-4DGlcpNAcb1-2[DGalp[3S]b1-4DGlcpNAcb1-4]DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", 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"uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O54905-1", "gene": "B3galt2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9JI67-1", "gene": "B3galt5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/5092", "id": "5092", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2548", "id": "2548", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5092", "id": "5092", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 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structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5092", "id": "5092", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 1, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "P38649-1", "gene": "Abo", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q921Q3-1", 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"Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG382", "id": "GOG382", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13761", "id": "13761", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/779", "id": "779", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24644", "id": "24644", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91860143", "id": "CID91860143", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252293874", "id": "SID252293874", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/2889", "id": "2889", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2612.32, "inchi_key": "KICMNTFKZMBYPS-GCEFQBDOSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N50", "parentid": "N6", "name": "N-glycan_a-D-Galp_50" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpa1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C79H131N5O59/c1-18(94)80-35-23(99)6-79(78(121)122,143-63(35)40(101)24(100)7-85)124-17-34-44(105)52(113)56(117)73(134-34)136-60-30(13-91)132-71(39(49(60)110)84-22(5)98)142-67-54(115)43(104)27(10-88)129-77(67)140-65-46(107)33(133-75(58(65)119)138-62-31(14-92)130-69(37(48(62)109)82-20(3)96)135-59-29(12-90)125-68(120)36(47(59)108)81-19(2)95)16-123-76-66(53(114)42(103)26(9-87)128-76)141-70-38(83-21(4)97)50(111)61(32(15-93)131-70)137-74-57(118)64(45(106)28(11-89)127-74)139-72-55(116)51(112)41(102)25(8-86)126-72/h23-77,85-93,99-120H,6-17H2,1-5H3,(H,80,94)(H,81,95)(H,82,96)(H,83,97)(H,84,98)(H,121,122)/t23-,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41-,42+,43+,44-,45-,46+,47+,48+,49+,50+,51-,52-,53-,54-,55+,56+,57+,58-,59+,60+,61+,62+,63+,64-,65-,66-,67-,68+,69-,70-,71-,72+,73-,74-,75-,76-,77+,79+/m0/s1" }, "G97823BP": { "glytoucan_ac": "G97823BP", "mass": 2223.8, "iupac": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/3474", "id": "3474", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5350", "id": "5350", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2756.4, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G80566CZ": { "glytoucan_ac": "G80566CZ", "mass": 3172.12, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)[alpha-D-NeupAc-(2->6)]-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,15,14/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-6-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-l1_d2-e1_d4-h1_e4-f1_f6-g2_h3-i1_h6-k2_i3-j2_l2-m1_m4-n1_n3-o2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\n19b:a-dman-HEX-1:5\\n20b:b-dglc-HEX-1:5\\n21s:n-acetyl\\n22b:b-dgal-HEX-1:5\\n23b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n24s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(3+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n\\n16:12o(6+2)17d\\n17:17d(5+1)18n\\n18:5o(6+1)19d\\n19:19o(2+1)20d\\n20:20d(2+1)21n\\n21:20o(4+1)22d\\n22:22o(3+2)23d\\n23:23d(5+1)24n", "species": [], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O54905-1", "gene": "B3galt2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9JI67-1", "gene": "B3galt5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2996", "id": "2996", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+42018", "id": "42018", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5472", "id": "5472", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1642", "id": "1642", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=2025", "id": "2025", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4002", "id": "4002", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858442", "id": "CID91858442", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291841", "id": "SID252291841", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3957.0, "inchi_key": "CALWCAHAVZHUMN-RKOQMOGESA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@H]([C@@H](CO)O)[C@@H]([C@H](CO)NC(=O)C)O)CO)CO[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)NC(=O)C)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": 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"detachedby": "", "id": "NE10", "parentid": "N7", "name": "N-glycan_a-D-Neu5Acp_E10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C120H197N9O88/c1-30(143)121-39(14-130)67(161)88(48(160)19-135)203-103-63(126-35(6)148)78(172)90(53(24-140)196-103)206-108-85(179)98(77(171)56(201-108)27-190-111-101(82(176)72(166)49(20-136)195-111)210-104-64(127-36(7)149)80(174)91(54(25-141)197-104)207-109-86(180)99(74(168)50(21-137)193-109)216-119(115(186)187)12-42(154)61(124-33(4)146)96(214-119)70(164)46(158)17-133)209-112-102(211-105-65(128-37(8)150)79(173)89(52(23-139)198-105)205-107-83(177)81(175)73(167)57(202-107)28-191-117(113(182)183)10-40(152)59(122-31(2)144)94(212-117)68(162)44(156)15-131)84(178)92(55(26-142)199-112)204-106-66(129-38(9)151)93(76(170)58(200-106)29-192-118(114(184)185)11-41(153)60(123-32(3)145)95(213-118)69(163)45(157)16-132)208-110-87(181)100(75(169)51(22-138)194-110)217-120(116(188)189)13-43(155)62(125-34(5)147)97(215-120)71(165)47(159)18-134/h39-112,130-142,152-181H,10-29H2,1-9H3,(H,121,143)(H,122,144)(H,123,145)(H,124,146)(H,125,147)(H,126,148)(H,127,149)(H,128,150)(H,129,151)(H,182,183)(H,184,185)(H,186,187)(H,188,189)/t39-,40-,41-,42-,43-,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73-,74-,75-,76+,77+,78+,79+,80+,81-,82-,83+,84-,85-,86+,87+,88+,89+,90+,91+,92+,93+,94+,95+,96+,97+,98-,99-,100-,101-,102-,103-,104-,105-,106-,107-,108-,109-,110-,111-,112+,117+,118+,119-,120-/m0/s1" }, "G62469XB": { "glytoucan_ac": "G62469XB", "mass": 1113.41, "iupac": "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->3/6)-beta-D-Galp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-D-GalNAc(?->", "wurcs": "WURCS=2.0/3,6,5/[u2112h_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O]/1-2-3-2-3-2/a3-b1_a6-e1_c3-d1_e4-f1_c1-b3|b6", "glycoct": "RES\\n1b:x-dgal-HEX-x:x\\n2s:n-acetyl\\n3b:b-dgal-HEX-1:5\\n4b:b-dglc-HEX-1:5\\n5s:n-acetyl\\n6b:b-dgal-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:3o(3|6+1)4d\\n4:4d(2+1)5n\\n5:4o(3+1)6d\\n6:1o(6+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G62469XB", "id": "G62469XB", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=core-2_O-glycan&jump_to_nav=true", "name": "core 2" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=O-glycan&jump_to_nav=true", "name": "O-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+21791", "id": "21791", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10744", "id": "10744", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16982", "id": "16982", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1393.72, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00032MO", "name": "O-Glycan core 1 fuzzy" }, { "id": "G00034MO", "name": "O-Glycan core 2 fuzzy" }, { "id": "G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G33608TH": { "glytoucan_ac": "G33608TH", "mass": 2588.94, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4-1-6-4-6/a4-b1_a6-n1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j3-k1_k3-l1_k4-m1", 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide 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"protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG575", "id": "GOG575", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14712", "id": "14712", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2541", "id": "2541", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26251", "id": "26251", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861843", "id": "CID91861843", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295915", "id": "SID252295915", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/5347", "id": "5347", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 156 } ], "mass_pme": 3205.62, "inchi_key": "FBKYPMWPLBBLBJ-XZLZVYHOSA-N", "publication": [ { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5347", "id": "5347", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "Structural determination of two N-linked glycans isolated from recombinant human lactoferrin expressed in BHK cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7774715", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5347", "id": "5347", "database": "UniCarbKB" } ], "authors": "Legrand D, Salmon V, Coddeville B, Benaissa M, Plancke Y, Spik G", "date": "1995", "pmid": "7774715" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. Absence of fucose residues questions the proposed mechanism of hyposideraemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2390069", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5347", "id": "5347", "database": "UniCarbKB" } ], "authors": "Derisbourg P, Wieruszeski JM, Montreuil J, Spik G", "date": "1990", "pmid": "2390069" }, { "title": "Structural study of the sugar chains of human lactoferrin: finding of four novel complex-type asparagine-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7068558", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5347", "id": "5347", "database": "UniCarbKB" } ], "authors": "Matsumoto A, Yoshima H, Takasaki S, Kobata A", "date": "1982", "pmid": "7068558" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O)O)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N99", "parentid": "N59", "name": "N-glycan_a-L-Fucp_99" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=5098", "id": "5098", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1509.77, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G77058YR": { "glytoucan_ac": "G77058YR", "mass": 2370.86, "iupac": 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(3+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:13o(6+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { 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{ "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N87", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N88", "parentid": "N87", "name": "N-glycan_b-D-Galp_88" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=35921", "id": "35921", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16288", "id": "16288", "database": "Glycosciences.de" }, { "url": "https://unicarb-db.expasy.org/searchStructures/28824", "id": "28824", "database": "UniCarbDB" } ], "glycoprotein": [], "mass_pme": 1134.61, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 5, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G42264OV": { "glytoucan_ac": "G42264OV", "mass": 1786.65, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-3-1-4-5/a4-b1_a6-j1_b4-c1_c3-d1_c6-g1_e4-f1_g6-h1_h4-i1_d?-e1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(6+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:1o(6+1)14d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/3407", "id": "3407", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": 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"Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3407", "id": "3407", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3407", "id": "3407", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" } ], "smiles_isomeric": "", 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"Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27285", "id": "27285", "database": "CarbBank" }, { "url": "xxx/yyy/GOG199", "id": "GOG199", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8140", "id": "8140", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1406", "id": "1406", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12704", "id": "12704", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24090", "id": "24090", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10962", "id": "G10962", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859305", "id": "CID91859305", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292872", "id": "SID252292872", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 }, { "uniprot_canonical_ac": "P00750-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 } ], "mass_pme": 3392.71, "inchi_key": "ZFZMXMVOCLZJFW-XRDIPGIISA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8687384", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Jaques AJ, Opdenakker G, Rademacher TW, Dwek RA, Zamze SE", "date": "1996", "pmid": "8687384" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Carbohydrate structure of recombinant human uterine tissue plasminogen activator expressed in mouse epithelial cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2513186", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Pfeiffer G, Schmidt M, Strube KH, Geyer R", "date": "1989", "pmid": "2513186" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1795", "id": "1795", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": 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"alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,18,17/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG308", "id": "GOG308", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13525", "id": "13525", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/876", "id": "876", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23495", "id": "23495", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91852394", "id": "CID91852394", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252284614", "id": "SID252284614", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1755", "id": "1755", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 5013.51, "inchi_key": "BFXHSOBTAPQBKY-LREVJEOCSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1755", "id": "1755", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1755", "id": "1755", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1755", "id": "1755", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1755", "id": "1755", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary 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"protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9Z222-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG418", "id": "GOG418", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13868", "id": "13868", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3427", "id": "3427", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24814", "id": "24814", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91860637", "id": "CID91860637", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252294482", "id": "SID252294482", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4203.11, "inchi_key": "ZFCVFRIAFODAFX-HNCGSIAASA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1989", "id": "1989", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N36", "parentid": "N10", "name": "N-glycan_b-D-GlcpNAc_36" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N37", "parentid": "N36", "name": "N-glycan_b-D-Galp_37" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N58", "parentid": "N37", "name": "N-glycan_a-D-Neup5Ac_58" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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} ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+508", "id": "508", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=10174", "id": "10174", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16228", "id": "16228", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G05915", "id": "G05915", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854694", "id": "CID91854694", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287354", "id": "SID252287354", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1060.54, "inchi_key": "FUSISFDFJVGXQI-MVZCQNFISA-N", "publication": [], "smiles_isomeric": 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"http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3948.9, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5161", "id": "5161", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5161", "id": "5161", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-4[DGalp[3S]b1-4DGlcpNAcb1-2]DManpa1-3[DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 16, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G87073UP": { "glytoucan_ac": "G87073UP", "mass": 1786.65, "iupac": "alpha-L-Fucp-(1->2)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,10,9/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-5-3-1-4/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f2-g1_h2-i1_i4-j1", "glycoct": 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"", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14303", "id": "14303", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25746", "id": "25746", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859098", "id": "CID91859098", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292634", "id": "SID252292634", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3815.94, "inchi_key": "BDUMTFVZVITIJS-TZNZGRBFSA-N", "publication": [], "smiles_isomeric": 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"GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36822", "id": "36822", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35905", "id": "35905", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15866", "id": "15866", "database": "Glycosciences.de" }, { "url": "https://unicarb-db.expasy.org/searchStructures/29071", "id": "29071", "database": "UniCarbDB" } ], "glycoprotein": [], "mass_pme": 1975.02, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": 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oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1999", "id": "1999", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1999", "id": "1999", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": 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"classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": 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], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G63038KS": { "glytoucan_ac": "G63038KS", "mass": 545.2, "iupac": "beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->6)-D-Gal(?->", "wurcs": "WURCS=2.0/3,3,2/[u2112h][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3/a6-b1_b3-c1", "glycoct": "RES\\n1b:x-dgal-HEX-x:x\\n2b:b-dglc-HEX-1:5\\n3s:n-acetyl\\n4b:b-dgal-HEX-1:5\\nLIN\\n1:1o(6+1)2d\\n2:2d(2+1)3n\\n3:2o(3+1)4d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G63038KS", "id": "G63038KS", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+10839", "id": "10839", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+12999", "id": "12999", 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"Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG414", "id": "GOG414", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13863", "id": "13863", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2899", "id": "2899", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24808", "id": "24808", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855309", "id": "CID91855309", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288100", "id": "SID252288100", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 3392.71, "inchi_key": "DEWAEDJUZRTCOG-XRDIPGIISA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1797", "id": "1797", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C104H171N7O76/c1-24-54(133)68(147)72(151)94(164-24)162-23-46-81(63(142)49(89(156)165-46)107-27(4)124)176-91-51(109-29(6)126)65(144)79(42(19-120)171-91)178-96-74(153)84(181-100-88(70(149)58(137)37(14-115)169-100)183-93-53(111-31(8)128)67(146)80(43(20-121)173-93)180-98-76(155)86(61(140)39(16-117)168-98)187-104(102(159)160)10-33(130)48(106-26(3)123)83(185-104)56(135)35(132)12-113)62(141)45(174-96)22-163-99-87(182-92-52(110-30(7)127)66(145)78(41(18-119)172-92)177-95-73(152)69(148)57(136)36(13-114)166-95)71(150)59(138)44(175-99)21-161-90-50(108-28(5)125)64(143)77(40(17-118)170-90)179-97-75(154)85(60(139)38(15-116)167-97)186-103(101(157)158)9-32(129)47(105-25(2)122)82(184-103)55(134)34(131)11-112/h24,32-100,112-121,129-156H,9-23H2,1-8H3,(H,105,122)(H,106,123)(H,107,124)(H,108,125)(H,109,126)(H,110,127)(H,111,128)(H,157,158)(H,159,160)/t24-,32-,33-,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57-,58+,59+,60-,61-,62+,63+,64+,65+,66+,67+,68+,69-,70-,71-,72-,73+,74-,75+,76+,77+,78+,79+,80+,81+,82+,83+,84-,85-,86-,87-,88-,89+,90+,91-,92-,93-,94+,95-,96-,97-,98-,99-,100+,103-,104-/m0/s1" }, "G54149OE": { "glytoucan_ac": "G54149OE", "mass": 2477.9, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,14,13/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a2112h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-6-4-2-5-6-7/a4-b1_a6-n1_b4-c1_c3-d1_c6-j1_d2-e1_d4-g1_e4-f1_g4-h1_h3-i1_j2-k1_k4-l1_l3-m1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dgal-HEX-1:5\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\n18b:a-dgal-HEX-1:5\\n19b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:12o(3+1)13d\\n13:5o(6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(4+1)17d\\n17:17o(3+1)18d\\n18:1o(6+1)19d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G54149OE", "id": "G54149OE", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "P16442-1", "gene": "ABO", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P38649-1", "gene": "Abo", "gene_link": "", "protein_name": "Histo-blood group ABO system transferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { 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}, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91846200", "id": "CID91846200", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252277224", "id": "SID252277224", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3094.59, "inchi_key": "AMVSJSYQGYXABR-FCRAFDIQSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O[C@@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { 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"parentid": "N8", "name": "N-glycan_a-D-Galp_39" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N50", "parentid": "N6", "name": "N-glycan_a-D-Galp_50" }, { "attachedby": "rxn.P16442-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C94H159N5O70/c1-21-45(118)58(131)63(136)86(146-21)144-19-28(117)71(46(119)27(7-100)95-22(2)112)159-82-41(96-23(3)113)54(127)75(36(15-108)153-82)164-92-70(143)79(53(126)40(158-92)20-145-93-80(62(135)50(123)32(11-104)152-93)168-84-43(98-25(5)115)57(130)74(38(17-110)155-84)163-91-69(142)78(52(125)34(13-106)151-91)166-89-66(139)61(134)49(122)31(10-103)149-89)167-94-81(169-85-44(99-26(6)116)56(129)72(35(14-107)156-85)161-87-64(137)59(132)47(120)29(8-101)147-87)67(140)76(39(18-111)157-94)160-83-42(97-24(4)114)55(128)73(37(16-109)154-83)162-90-68(141)77(51(124)33(12-105)150-90)165-88-65(138)60(133)48(121)30(9-102)148-88/h21,27-94,100-111,117-143H,7-20H2,1-6H3,(H,95,112)(H,96,113)(H,97,114)(H,98,115)(H,99,116)/t21-,27-,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47-,48-,49-,50+,51-,52-,53+,54+,55+,56+,57+,58+,59-,60-,61-,62-,63-,64+,65+,66+,67-,68+,69+,70-,71+,72+,73+,74+,75+,76+,77-,78-,79-,80-,81-,82-,83-,84-,85-,86+,87-,88+,89+,90-,91-,92-,93-,94+/m0/s1" 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(4+1)12d\\n12:12d(2+1)13n\\n13:12o(3+1)14d\\n14:12o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n", "species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and 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"http://www.unicarbkb.org/structure/7822", "id": "7822", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3579.79, "inchi_key": "RTCQHARONSRQEE-CISABKSTSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": 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"rxn.Q9BT22-1", "detachedby": "", "id": "NE10", "parentid": "N7", "name": "N-glycan_a-D-Neu5Acp_E10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": 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"count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G83565SN": { "glytoucan_ac": "G83565SN", "mass": 1841.62, "iupac": "alpha-D-Glcp-(1->3)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/4,11,10/[u2122h_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1a_1-5]/1-2-3-3-3-4-3-3-3-3-3/a4-b1_b3-c1_b6-g1_c2-d1_d2-e1_e3-f1_g3-h1_g6-j1_h2-i1_j2-k1", "glycoct": 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"evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 } ], "mass_pme": 2129.1, "inchi_key": "YKZSVLXVPPCXHV-SKWMGFDDSA-N", "publication": [ { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": 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"composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 5, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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}, "G51369CD": { "glytoucan_ac": "G51369CD", "mass": 1882.64, "iupac": "?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),?-D-Manp-(1->?),alpha-D-Manp-(1->3)[alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1122h-1x_1-5]/1-1-2-3-3-4-4-4-4-4-4/a4-b1_b4-c1_c3-d1_c6-e1_f1-a?|b?|c?|d?|e?}_g1-a?|b?|c?|d?|e?}_h1-a?|b?|c?|d?|e?}_i1-a?|b?|c?|d?|e?}_j1-a?|b?|c?|d?|e?}_k1-a?|b?|c?|d?|e?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(6+1)7d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n8b:x-dman-HEX-1:5\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n9b:x-dman-HEX-1:5\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n10b:x-dman-HEX-1:5\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n11b:x-dman-HEX-1:5\\nUND5:100.0:100.0\\nParentIDs:1|3|5|6|7\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n12b:x-dman-HEX-1:5\\nUND6:100.0:100.0\\nParentIDs:1|3|5|6|7\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n13b:x-dman-HEX-1:5", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7775", "id": "7775", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7775", "id": "7775", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P29965-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P29965/annotated", "id": "P29965", "database": "UniCarbKB" } ], "protein_name": "CD40 ligand", "gene_name": "CD40LG", "position": 240 } ], "mass_pme": 2373.19, "inchi_key": "", "publication": [ { "title": "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11676606", "journal": "Protein expression and purification", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7775", "id": "7775", "database": "UniCarbKB" } ], "authors": "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J", "date": "2001", "pmid": "11676606" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G75381NI": { "glytoucan_ac": "G75381NI", "mass": 2077.75, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,11,10/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-4-2-5-6-7/a4-b1_a6-k1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_h4-i1_i3-j2", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n15s:n-acetyl\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:5o(6+1)10d\\n10:10o(2+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:13o(3+2)14d\\n14:14d(5+1)15n\\n15:1o(6+1)16d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G75381NI", "id": "G75381NI", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": 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"inchi_key": "", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)O)O)CO)CO)O)CO)O[C@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O[C@@H]5[C@@H]([C@H]([C@H]([C@H](O5)CO)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpa1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpb1-", "number_monosaccharides": 5, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00070MO", "name": "Glycosphingolipid Neo-lacto series" } ], "inchi": "" }, "G67196QU": { 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G67196QU", "id": "G67196QU", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21416_P", "id": "carbNlink_21416_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28969", "id": "28969", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 4379.21, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 8, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 19, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G34754UR": { "glytoucan_ac": "G34754UR", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": 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], "glycoprotein": [], "mass_pme": 3579.79, "inchi_key": "YZVOKWDTEJAATD-HTPUPBDZSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@H]([C@@H]([C@@H]([C@H](O4)O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](OC([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": 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"InChI=1S/C109H178N8O80/c1-26(127)110-51-34(135)9-107(104(165)166,195-87(51)59(141)37(138)12-118)173-23-48-63(145)73(155)78(160)98(183-48)188-83-42(17-123)178-94(55(69(83)151)114-30(5)131)171-21-46-66(148)77(159)92(194-97-58(117-33(8)134)72(154)85(44(19-125)181-97)190-100-80(162)75(157)65(147)50(185-100)25-175-109(106(169)170)11-36(137)53(112-28(3)129)89(197-109)61(143)39(140)14-120)103(186-46)192-90-67(149)47(182-101(81(90)163)191-86-45(20-126)179-95(56(70(86)152)115-31(6)132)187-82-41(16-122)176-93(164)54(68(82)150)113-29(4)130)22-172-102-91(76(158)62(144)40(15-121)177-102)193-96-57(116-32(7)133)71(153)84(43(18-124)180-96)189-99-79(161)74(156)64(146)49(184-99)24-174-108(105(167)168)10-35(136)52(111-27(2)128)88(196-108)60(142)38(139)13-119/h34-103,118-126,135-164H,9-25H2,1-8H3,(H,110,127)(H,111,128)(H,112,129)(H,113,130)(H,114,131)(H,115,132)(H,116,133)(H,117,134)(H,165,166)(H,167,168)(H,169,170)/t34-,35-,36-,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63-,64-,65-,66+,67+,68+,69+,70+,71+,72+,73-,74-,75-,76-,77-,78+,79+,80+,81-,82+,83+,84+,85+,86+,87+,88+,89+,90-,91-,92-,93?,94+,95-,96-,97-,98-,99-,100-,101-,102-,103+,107+,108+,109+/m0/s1" 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"http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbOlink_20067_D000", "id": "carbOlink_20067_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=17597", "id": "17597", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00592", "id": "G00592", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID71298221", "id": "CID71298221", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288313", "id": "SID252288313", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1305.67, "inchi_key": "UIRDKPIOTPRKAG-UBHMJAKMSA-N", "publication": [], "smiles_isomeric": 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"protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 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"publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1983", "id": "1983", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,12,11/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-3-1-4-5-1-4/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-k1_h4-i1_i3-j2_k4-l1", "glycoct": 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"Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine 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"Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" } ], "crossref": [ { "url": "xxx/yyy/GOG417", "id": "GOG417", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13867", "id": "13867", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1696", "id": "1696", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24813", "id": "24813", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858797", "id": "CID91858797", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292276", "id": "SID252292276", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 4203.11, "inchi_key": "ZPRVRFTXMHKGEP-KPYQADQFSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1747", "id": "1747", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": 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"N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-4DGlcpNAcb1-2]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"1482348" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1189", "id": "1189", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1189", "id": "1189", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" }, { "title": "Carbohydrate structures of a human tissue plasminogen activator variant expressed in recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2226797", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1189", "id": "1189", "database": "UniCarbKB" } ], "authors": "Nimtz M, Noll G, Paques EP, Conradt HS", "date": "1990", "pmid": "2226797" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. 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"RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(4+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(6+2)16d\\n16:16d(5+1)17n\\n17:1o(6+1)18d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G44264DI", "id": "G44264DI", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" 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"C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H](C(O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)O)O)NC(=O)C)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C90H148N6O66/c1-21-47(114)58(125)63(130)81(144-21)140-18-40-72(54(121)43(77(135)145-40)93-24(4)106)155-79-45(95-26(6)108)56(123)70(35(15-102)148-79)158-85-67(134)75(159-84-66(133)62(129)71(36(16-103)150-84)154-78-44(94-25(5)107)55(122)68(33(13-100)147-78)156-82-64(131)59(126)51(118)38(152-82)19-142-89(87(136)137)8-28(110)41(91-22(2)104)73(161-89)48(115)30(112)10-97)53(120)37(151-85)17-141-86-76(61(128)50(117)32(12-99)146-86)160-80-46(96-27(7)109)57(124)69(34(14-101)149-80)157-83-65(132)60(127)52(119)39(153-83)20-143-90(88(138)139)9-29(111)42(92-23(3)105)74(162-90)49(116)31(113)11-98/h21,28-86,97-103,110-135H,8-20H2,1-7H3,(H,91,104)(H,92,105)(H,93,106)(H,94,107)(H,95,108)(H,96,109)(H,136,137)(H,138,139)/t21-,28-,29-,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51-,52-,53+,54+,55+,56+,57+,58+,59-,60-,61-,62+,63-,64+,65+,66-,67-,68+,69+,70+,71+,72+,73+,74+,75-,76-,77?,78-,79-,80-,81+,82-,83-,84+,85-,86-,89+,90+/m0/s1" }, "G54505OS": { "glytoucan_ac": "G54505OS", "mass": 2077.75, "iupac": "beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-3-1-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i4-j1_j3-k2", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\n10b:b-dgal-HEX-1:5\\n11b:a-dman-HEX-1:5\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:7o(4+1)10d\\n10:5o(6+1)11d\\n11:11o(2+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(3+2)15d\\n15:15d(5+1)16n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/6063", "id": "6063", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/683", "id": "683", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/6063", "id": "6063", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2582.31, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G62464EH": { "glytoucan_ac": "G62464EH", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,14,13/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_h6-l1_i4-j1_j3-k2_l4-m1_m3-n2", "glycoct": "RES\\n1b:x-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n17s:n-acetyl\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:15o(3+2)16d\\n16:16d(5+1)17n\\n17:12o(6+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(3+2)21d\\n21:21d(5+1)22n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G62464EH", "id": "G62464EH", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_44742_D000", "id": "carbNlink_44742_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=21000", "id": "21000", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G05697", "id": "G05697", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848167", "id": "CID91848167", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279605", "id": "SID252279605", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3579.79, "inchi_key": "LYJGAUIUSLXKLQ-AVCZDMDPSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](OC([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)CO[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": 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"British journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Takahashi I, Maehara Y, Kusumoto T, Kohnoe S, Kakeji Y, Baba H, Sugimachi K", "date": "1994", "pmid": "8286201" }, { "title": "Sialyl-Tn expression in gastric carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7999432", "journal": "European journal of cancer (Oxford, England : 1990)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Carneiro F, David L, Sobrinho-Simoes M", "date": "1994", "pmid": "7999432" }, { "title": "Blood-group sialyl-Tn antigen is more specific than Tn as a tumor marker in the pancreas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7846011", "journal": "Pancreas", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Ching CK, Holmes SW, Holmes GK, Long RG", "date": "1994", "pmid": "7846011" }, { "title": "Becoming an independent homebirth midwife.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7887817", "journal": "Australian College of Midwives Incorporated journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Smith S", "date": "1994", "pmid": "7887817" }, { "title": "Expression of sialyl-Tn predicts the effect of adjuvant chemotherapy in node-positive breast cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7981088", "journal": "British journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Miles DW, Happerfield LC, Smith P, Gillibrand R, Bobrow LG, Gregory WM, Rubens RD", "date": "1994", "pmid": "7981088" }, { "title": "Simple mucins (T, sialosyl-T, Tn and sialosyl-Tn) are not diagnostic for malignant breast lesions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7516636", "journal": "Anticancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Reed W, Bryne M, Clausen H, Dabelsteen E, Nesland JM", "date": "1994", "pmid": "7516636" }, { "title": "Coexpression of cancer-associated carbohydrate antigens, Tn and sialyl Tn.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7841802", "journal": "Glycoconjugate journal", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Nakada H, Inoue M, Tanaka N, Yamashina I", "date": "1994", "pmid": "7841802" }, { "title": "Predictive value of preoperative serum sialyl Tn antigen levels in prognosis of patients with gastric cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8364861", "journal": "Cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Takahashi I, Maehara Y, Kusumoto T, Yoshida M, Kakeji Y, Kusumoto H, Furusawa M, Sugimachi K", "date": "1993", "pmid": "8364861" }, { "title": "Expression of Sialyl-Tn antigens in normal squamous epithelium, dysplasia, and squamous cell carcinoma in the esophagus.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8453646", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Ikeda Y, Kuwano H, Baba K, Ikebe M, Matushima T, Adachi Y, Mori M, Sugimachi K", "date": "1993", "pmid": "8453646" }, { "title": "Expression of sialyl-Tn antigen is correlated with survival time of patients with gastric carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8260233", "journal": "European journal of cancer (Oxford, England : 1990)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Ma XC, Terata N, Kodama M, Jancic S, Hosokawa Y, Hattori T", "date": "1993", "pmid": "8260233" }, { "title": "Serum sialyl Tn as an independent predictor of poor prognosis in patients with epithelial ovarian cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1727929", "journal": "Journal of clinical oncology : official journal of the American Society of Clinical Oncology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Kobayashi H, Terao T, Kawashima Y", "date": "1992", "pmid": "1727929" }, { "title": "[Investigation of a new method for separation of neutrophils from a small volume of human blood].", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1513058", "journal": "Nihon eiseigaku zasshi. Japanese journal of hygiene", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Kudoh E, Komatu T, Nakaji S, Sugawara K, Kumae T", "date": "1992", "pmid": "1513058" }, { "title": "Altered expression of sialyl-Tn, Lewis antigens and carcinoembryonic antigen between primary and metastatic lesions of uterine cervical cancers.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1618644", "journal": "Histochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Ogawa H, Inoue M, Tanizawa O, Miyamoto M, Sakurai M", "date": "1992", "pmid": "1618644" }, { "title": "Sialyl-Tn, sialyl-Lewis Xi, CA 19-9, CA 125, carcinoembryonic antigen, and tissue polypeptide antigen in differentiating ovarian cancer from benign tumors.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1346716", "journal": "Obstetrics and gynecology", "evidence": [ { 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"title": "Immunochemical studies on the differential binding properties of two monoclonal antibodies reacting with Tn red cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1847560", "journal": "Transfusion", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "King MJ, Parsons SF, Wu AM, Jones N", "date": "1991", "pmid": "1847560" }, { "title": "Blood group and blood-group-related antigens in normal pancreas and pancreas cancer: enhanced expression of precursor type 1, Tn and sialyl-Tn in pancreas cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1988363", "journal": "International journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Schuessler MH, Pintado S, Welt S, Real FX, Xu M, Melamed MR, Lloyd KO, Oettgen HF", "date": "1991", "pmid": "1988363" }, { "title": "Clinical evaluation of circulating serum sialyl Tn antigen levels in patients with epithelial ovarian cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1851822", "journal": "Journal of clinical oncology : official journal of the American Society of Clinical Oncology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Kobayashi H, Terao T, Kawashima Y", "date": "1991", "pmid": "1851822" }, { "title": "Altered O-glycan synthesis in lymphocytes from patients with Wiskott-Aldrich syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2033371", "journal": "The Journal of experimental medicine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/6", "id": "6", "database": "UniCarbKB" } ], "authors": "Piller F, Le Deist F, Weinberg KI, Parkman R, Fukuda M", "date": "1991", "pmid": "2033371" }, { "title": "Serological mapping of the TAG-72 tumor-associated antigen using 19 distinct monoclonal antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1696162", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Kuroki M, Fernsten PD, Wunderlich D, Colcher D, Simpson JF, Poole DJ, Schlom J", "date": "1990", "pmid": "1696162" }, { "title": "Clinical value of sialyl Tn antigen in patients with gynecologic tumors.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2342728", "journal": "Obstetrics and gynecology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G36123IU", "id": "G36123IU", "database": "GlyTouCan" } ], "authors": "Inoue M, Ogawa H, Nakanishi K, Tanizawa O, Karino K, Endo J", "date": "1990", "pmid": "2342728" }, { "title": "Inhibition of human immunodeficiency virus (HIV) infection in vitro by anticarbohydrate monoclonal antibodies: peripheral glycosylation of HIV envelope glycoprotein gp120 may be a target for virus neutralization.", "url": 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"http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbOlink_20813_D000", "id": "carbOlink_20813_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=19061", "id": "19061", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G02816", "id": "G02816", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID71298462", "id": "CID71298462", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252282995", "id": "SID252282995", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2058.06, "inchi_key": "WMVKEHVSBGNICY-GGCSKWJKSA-N", "publication": [], "smiles_isomeric": 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"Polylactosamine" }, { "id": "G00066MO", "name": "Blood group A" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "InChI=1S/C64H107N5O45/c1-15-34(83)44(93)45(94)61(98-15)114-55-54(113-57-29(65-16(2)78)40(89)35(84)21(7-70)100-57)39(88)25(11-74)103-64(55)109-50-28(14-77)106-60(32(43(50)92)68-19(5)81)112-53-38(87)24(10-73)102-63(47(53)96)108-49-27(13-76)105-59(31(42(49)91)67-18(4)80)111-52-37(86)23(9-72)101-62(46(52)95)107-48-26(12-75)104-58(30(41(48)90)66-17(3)79)110-51-33(69-20(6)82)56(97)99-22(8-71)36(51)85/h15,21-64,70-77,83-97H,7-14H2,1-6H3,(H,65,78)(H,66,79)(H,67,80)(H,68,81)(H,69,82)/t15-,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35-,36-,37-,38-,39-,40+,41+,42+,43+,44+,45-,46+,47+,48+,49+,50+,51+,52-,53-,54-,55+,56?,57+,58-,59-,60-,61-,62-,63-,64-/m0/s1" }, "G37126IL": { "glytoucan_ac": "G37126IL", "mass": 463.1, "iupac": "beta-D-Galp6S-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/2,2,1/[u2122h_2*NCC/3=O][a2112h-1b_1-5_6*OSO/3=O/3=O]/1-2/a4-b1", "glycoct": 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[], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 2, "motifs": [], "inchi": "" }, "G63125IE": { "glytoucan_ac": "G63125IE", "mass": 3027.08, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/7,15,14/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-7/a4-b1_a6-o1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e3-f1_f3-g2_h3-i1_i3-j2_k2-l1_l3-m1_m3-n2", "glycoct": 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N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { 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"Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O54905-1", "gene": "B3galt2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9JI67-1", "gene": "B3galt5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4950", "id": "4950", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=5730", "id": "5730", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=729", "id": "729", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11911", "id": "G11911", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91828217", "id": "CID91828217", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252294367", "id": "SID252294367", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P00742-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00742/annotated", "id": "P00742", "database": "UniCarbKB" } ], "protein_name": "Coagulation factor X", "gene_name": "F10", "position": 231 }, { "uniprot_canonical_ac": "P00742-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00742/annotated", "id": "P00742", "database": "UniCarbKB" } ], "protein_name": "Coagulation factor X", "gene_name": "F10", "position": 221 }, { "uniprot_canonical_ac": "P07602-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07602/annotated", "id": "P07602", "database": "UniCarbKB" } ], "protein_name": "Prosaposin", "gene_name": "PSAP", "position": 215 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 } ], "mass_pme": 2945.5, "inchi_key": "NMOVOKGRXPIVPX-JLPVGVCHSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Structure of the asparagine-linked sugar chains of porcine kidney and human urine cerebroside sulfate activator protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11180632", "journal": "Journal of mass spectrometry : JMS", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Faull KF, Johnson J, Kim MJ, To T, Whitelegge JP, Stevens RL, Fluharty CB, Fluharty AL", "date": "2000", "pmid": "11180632" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" }, { "title": "Structural study of the oligosaccharide moieties of sphingolipid activator proteins, saposins A, C and D obtained from the spleen of a Gaucher patient.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344278", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Ito K, Takahashi N, Takahashi A, Shimada I, Arata Y, O'Brien JS, Kishimoto Y", "date": "1993", "pmid": "8344278" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1919", "id": "1919", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": 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"id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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}, "G81575FZ": { "glytoucan_ac": "G81575FZ", "mass": 3537.25, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,17,16/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f6-g2_h4-i1_i6-j2_k2-l1_k4-o1_l4-m1_m6-n2_o4-p1_p3-q2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n11s:n-acetyl\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:b-dgal-HEX-1:5\\n15b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:b-dglc-HEX-1:5\\n19s:n-acetyl\\n20b:b-dgal-HEX-1:5\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\n23b:b-dglc-HEX-1:5\\n24s:n-acetyl\\n25b:b-dgal-HEX-1:5\\n26b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n27s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:9o(6+2)10d\\n10:10d(5+1)11n\\n11:6o(6+1)12d\\n12:12d(2+1)13n\\n13:12o(4+1)14d\\n14:14o(6+2)15d\\n15:15d(5+1)16n\\n16:5o(6+1)17d\\n17:17o(2+1)18d\\n18:18d(2+1)19n\\n19:18o(4+1)20d\\n20:20o(6+2)21d\\n21:21d(5+1)22n\\n22:17o(4+1)23d\\n23:23d(2+1)24n\\n24:23o(4+1)25d\\n25:25o(3+2)26d\\n26:26d(5+1)27n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G81575FZ", "id": "G81575FZ", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5425", "id": "5425", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9886", "id": "9886", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15794", "id": "15794", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91852081", "id": "CID91852081", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252284233", "id": "SID252284233", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4406.22, "inchi_key": "GPZAWBVWFXMMER-JPHJGLNYSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)OC[C@@H]4[C@H]([C@@H]([C@@H]([C@H](O4)O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@H]([C@@H](CO)O)[C@@H]([C@H](CO)NC(=O)C)O)CO)CO[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE87", "parentid": "N1", "name": "N-glycan_b-D-GlcNAcp_E87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE93", "parentid": "NE87", "name": "N-glycan_b-D-Galp_E93" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE95", "parentid": "NE93", "name": "N-glycan_a-D-Neu5Acp_E95" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N46", "parentid": "N32", "name": "N-glycan_a-D-Neup5Ac_46" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { 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"http://www.unicarbkb.org/structure/690", "id": "690", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=core-2_O-glycan&jump_to_nav=true", "name": "core 2" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=O-glycan&jump_to_nav=true", "name": "O-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2674", "id": "2674", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/690", "id": "690", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2292.17, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-6[DGalpb1-3]DGalpNAca1-", "number_monosaccharides": 10, "motifs": [ { "id": "G00031MO", "name": "O-Glycan core 1" }, { "id": "G00032MO", "name": "O-Glycan core 1 fuzzy" }, { "id": "G00033MO", "name": "O-Glycan core 2" }, { "id": "G00034MO", "name": "O-Glycan core 2 fuzzy" }, { "id": "G00041MO", "name": "O-Glycan core 6" }, { "id": "G00042MO", "name": "O-Glycan core 6 Fuzzy" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G12230UX": { "glytoucan_ac": "G12230UX", "mass": 1058.4, "iupac": "beta-D-Galp-(1->3)[alpha-D-Galp-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-D-GalNAc(?->", "wurcs": 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"G46542RN": { "glytoucan_ac": "G46542RN", "mass": 2985.04, "iupac": "alpha-D-NeupGc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupGc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O]/1-1-2-3-1-4-5-1-4-3-1-4-5-1-4/a4-b1_b4-c1_c3-d1_c6-j1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_j2-k1_j6-n1_k4-l1_l6-m2_n4-o1", "glycoct": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+995", "id": "995", "database": "CarbBank" }, { "url": "xxx/yyy/GOG1101", "id": "GOG1101", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=5437", "id": "5437", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25757", "id": "25757", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7781", "id": "7781", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00067", "id": "G00067", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID56836390", "id": "CID56836390", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252292359", "id": "SID252292359", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1352.69, "inchi_key": "UTVHXMGRNOOVTB-SWDDOKSCSA-N", "publication": [ { "title": "Neisseria gonorrhoeae that infect men have lipooligosaccharides with terminal N-acetyllactosamine repeats.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9873046", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G84034JH", "id": "G84034JH", "database": "GlyTouCan" } ], "authors": "John CM, Schneider H, Griffiss JM", "date": "1999", "pmid": "9873046" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O[C@H]2[C@H]([C@H](O[C@H]([C@@H]2O)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@H](O[C@H]([C@@H]4O)O[C@@H]5[C@H](O[C@H]([C@@H]([C@H]5O)O)O)CO)CO)O)CO)CO)O)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpb1-", "number_monosaccharides": 6, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00070MO", "name": "Glycosphingolipid Neo-lacto series" } ], "inchi": "InChI=1S/C40H68N2O31/c1-9(49)41-17-22(54)30(69-38-27(59)24(56)19(51)11(3-43)64-38)15(7-47)67-36(17)72-33-20(52)12(4-44)65-39(28(33)60)70-31-16(8-48)68-37(18(23(31)55)42-10(2)50)73-34-21(53)13(5-45)66-40(29(34)61)71-32-14(6-46)63-35(62)26(58)25(32)57/h11-40,43-48,51-62H,3-8H2,1-2H3,(H,41,49)(H,42,50)/t11-,12-,13-,14-,15-,16-,17-,18-,19+,20+,21+,22-,23-,24+,25-,26-,27-,28-,29-,30-,31-,32-,33+,34+,35-,36+,37+,38+,39+,40+/m1/s1" }, "G10859BP": { "glytoucan_ac": "G10859BP", "mass": 2080.78, "iupac": 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{ "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35936", "id": "35936", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16414", "id": "16414", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2585.34, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00048MO", "name": "Lewis B" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00052MO", "name": "Lewis Y" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00058MO", "name": "Polylactosamine" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G36362BK": { "glytoucan_ac": "G36362BK", "mass": 2882.05, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,16,15/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-2-5-4-2-5-2-5-6/a4-b1_a6-p1_b4-c1_c3-d1_c6-k1_d2-e1_d4-i1_e4-f1_f3-g1_g4-h1_i4-j1_k2-l1_k6-n1_l4-m1_n4-o1", "glycoct": 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"gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", 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antibodies directed to cancer-associated ganglioside antigens having various sialic acid linkages.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2111348", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G93400AK", "id": "G93400AK", "database": "GlyTouCan" } ], "authors": "Zenita K, Hirashima K, Shigeta K, Hiraiwa N, Takada A, Hashimoto K, Fujimoto E, Yago K, Kannagi R", "date": "1990", "pmid": "2111348" }, { "title": "Quantitative and qualitative characterization of human cancer-associated serum glycoprotein antigens expressing epitopes consisting of sialyl or sialyl-fucosyl type 1 chain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2454154", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G93400AK", "id": "G93400AK", "database": "GlyTouCan" } ], "authors": "Kannagi R, Kitahara A, Itai S, Zenita K, Shigeta K, Tachikawa T, Noda A, Hirano H, Abe M, Shin S, et al.", 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"gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 2474.16, "inchi_key": "QVDWBDQRRHDADU-JYPDAGSWSA-N", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1539", "id": "1539", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": 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"Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=14605", "id": "14605", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26135", "id": "26135", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91848271", "id": "CID91848271", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252279733", "id": "SID252279733", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3753.88, "inchi_key": "DYHKIXRFHDJPFJ-VFCHQLMOSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"species": [], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q766D5-1", "gene": "B4galnt4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG831", "id": "GOG831", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14083", "id": "14083", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25467", "id": "25467", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91851937", "id": "CID91851937", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252284062", "id": "SID252284062", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4605.31, "inchi_key": "PFFAJJCFKIQVAJ-RGYZTUSRSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO[C@@]1(C[C@@H]([C@H]([C@@H](O1)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N29", "parentid": "N2", "name": "N-glycan_b-D-GalpNAc_29" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N69", "parentid": "N29", "name": "N-glycan_a-D-Neup5Ac_69" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N38", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_38" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpNAcb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 18, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C142H231N11O102/c1-34-78(186)96(204)98(206)128(225-34)222-32-66-110(90(198)71(121(212)226-66)147-39(6)171)241-125-75(151-43(10)175)94(202)106(59(26-163)232-125)242-129-100(208)115(246-134-120(248-127-76(152-44(11)176)92(200)104(58(25-162)233-127)239-123-72(148-40(7)172)89(197)83(191)65(236-123)33-224-139(135(213)214)13-46(178)67(143-35(2)167)111(249-139)79(187)50(182)17-154)99(207)109(62(29-166)235-134)240-124-74(150-42(9)174)93(201)107(60(27-164)231-124)244-131-102(210)117(86(194)55(22-159)228-131)254-141(137(217)218)15-48(180)69(145-37(4)169)113(251-141)81(189)52(184)19-156)88(196)64(237-129)31-223-133-119(247-126-77(153-45(12)177)95(203)108(61(28-165)234-126)245-132-103(211)118(87(195)56(23-160)229-132)255-142(138(219)220)16-49(181)70(146-38(5)170)114(252-142)82(190)53(185)20-157)97(205)84(192)63(238-133)30-221-122-73(149-41(8)173)91(199)105(57(24-161)230-122)243-130-101(209)116(85(193)54(21-158)227-130)253-140(136(215)216)14-47(179)68(144-36(3)168)112(250-140)80(188)51(183)18-155/h34,46-134,154-166,178-212H,13-33H2,1-12H3,(H,143,167)(H,144,168)(H,145,169)(H,146,170)(H,147,171)(H,148,172)(H,149,173)(H,150,174)(H,151,175)(H,152,176)(H,153,177)(H,213,214)(H,215,216)(H,217,218)(H,219,220)/t34-,46-,47-,48-,49-,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65+,66+,67+,68+,69+,70+,71+,72+,73+,74+,75+,76+,77+,78+,79+,80+,81+,82+,83-,84+,85-,86-,87-,88+,89+,90+,91+,92+,93+,94+,95+,96+,97-,98-,99-,100-,101+,102+,103+,104+,105+,106+,107+,108+,109+,110+,111+,112+,113+,114+,115-,116-,117-,118-,119-,120-,121+,122+,123-,124-,125-,126-,127-,128+,129-,130-,131-,132-,133-,134+,139+,140-,141-,142-/m0/s1" }, "G70072FZ": { "glytoucan_ac": "G70072FZ", "mass": 3535.24, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,17,16/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": 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"Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5447", "id": "5447", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9847", "id": "9847", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15753", "id": "15753", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91857754", "id": "CID91857754", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291020", "id": "SID252291020", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3769.91, "inchi_key": "AHVKFZWKDLKHFK-HZMJHDLFSA-N", "publication": [], "smiles_isomeric": 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}, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_14" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": 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"parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N59", "parentid": "N6", "name": "N-glycan_b-D-GlcpNAc_59" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N60", "parentid": "N59", "name": "N-glycan_b-D-Galp_60" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N65", "parentid": "N60", "name": "N-glycan_b-D-GlcpNAc_65" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N66", "parentid": "N65", "name": "N-glycan_b-D-Galp_66" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": 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"St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "xxx/yyy/GOG111", "id": "GOG111", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14648", "id": "14648", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=26178", "id": "26178", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91856208", "id": "CID91856208", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252289180", "id": "SID252289180", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4390.19, "inchi_key": "YEYCBKHEBDJPNM-YQRGPIKASA-N", "publication": [], "smiles_isomeric": 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}, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N14", 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G33309GL", "id": "G33309GL", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", 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"title": "Structural variations of O-linked oligosaccharides present in leukosialin isolated from erythroid, myeloid, and T-lymphoid cell lines.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2943741", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/102", "id": "102", "database": "UniCarbKB" } ], "authors": "Carlsson SR, Sasaki H, Fukuda M", "date": "1986", "pmid": "2943741" }, { "title": "The structure of the carbohydrate units of human plasma galactoglycoprotein determined by 500-megahertz 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6725284", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/102", "id": "102", "database": "UniCarbKB" } ], "authors": "Akiyama K, Simons ER, Bernasconi P, Schmid K, van Halbeek H, Vliegenthart JF, Haupt H, Schwick HG", "date": "1984", "pmid": "6725284" } ], "smiles_isomeric": 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"database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3923.71, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5181", "id": "5181", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": 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"count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C68H116N4O51/c1-16(83)69-20(5-73)34(88)52(21(87)6-74)116-60-31(70-17(2)84)41(95)55(28(13-81)112-60)119-66-51(105)57(121-68-59(47(101)38(92)25(10-78)111-68)123-62-33(72-19(4)86)42(96)53(27(12-80)114-62)117-63-48(102)44(98)35(89)22(7-75)107-63)40(94)30(115-66)15-106-67-58(46(100)37(91)24(9-77)110-67)122-61-32(71-18(3)85)43(97)54(29(14-82)113-61)118-65-50(104)56(39(93)26(11-79)109-65)120-64-49(103)45(99)36(90)23(8-76)108-64/h20-68,73-82,87-105H,5-15H2,1-4H3,(H,69,83)(H,70,84)(H,71,85)(H,72,86)/t20-,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34+,35-,36-,37+,38+,39-,40+,41+,42+,43+,44-,45-,46-,47-,48+,49+,50+,51-,52+,53+,54+,55+,56-,57-,58-,59-,60-,61-,62-,63-,64+,65-,66-,67-,68+/m0/s1" }, "G04855ZO": { "glytoucan_ac": "G04855ZO", "mass": 2354.86, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,13,12/[u2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-4-2-5-2-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-h1_d2-e1_d4-g1_e4-f1_h2-i1_h6-k1_i4-j1_k4-l1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:a-dman-HEX-1:5\\n13b:b-dglc-HEX-1:5\\n14s:n-acetyl\\n15b:b-dgal-HEX-1:5\\n16b:b-dglc-HEX-1:5\\n17s:n-acetyl\\n18b:b-dgal-HEX-1:5\\n19b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:5o(6+1)12d\\n12:12o(2+1)13d\\n13:13d(2+1)14n\\n14:13o(4+1)15d\\n15:12o(6+1)16d\\n16:16d(2+1)17n\\n17:16o(4+1)18d\\n18:1o(6+1)19d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G04855ZO", "id": "G04855ZO", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+40546", "id": "40546", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7374", "id": "7374", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=572", "id": "572", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=715", "id": "715", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2915.49, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7563", "id": "7563", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P08861-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P08861/annotated", "id": "P08861", "database": "UniCarbKB" } ], "protein_name": "Chymotrypsin-like elastase family member 3B", "gene_name": "CELA3B", "position": 114 } ], "mass_pme": 2773.41, "inchi_key": "", "publication": [ { "title": "Carbohydrate structure of human pancreatic elastase 1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1898343", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7563", "id": "7563", "database": "UniCarbKB" } ], "authors": "Wendorf P, Linder D, Sziegoleit A, Geyer R", "date": "1991", "pmid": "1898343" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpa1-3[LFucpa1-2]DGalpb1-3/4[LFucpa1-3/4]DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00048MO", "name": "Lewis B" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00052MO", "name": "Lewis Y" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo 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"title": "Down-regulation of Sp1 activity through modulation of O-glycosylation by treatment with a low glucose mimetic, 2-deoxyglucose.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/14532290", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Kang HT, Ju JW, Cho JW, Hwang ES", "date": "2003", "pmid": "14532290" }, { "title": "The transcription factor PDX-1 is post-translationally modified by O-linked N-acetylglucosamine and this modification is correlated with its DNA binding activity and insulin secretion in min6 beta-cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12831837", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Gao Y, Miyazaki J, Hart GW", "date": "2003", "pmid": "12831837" }, { "title": "YY1 is 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glycosylation.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11050244", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Du XL, Edelstein D, Rossetti L, Fantus IG, Goldberg H, Ziyadeh F, Wu J, Brownlee M", "date": "2000", "pmid": "11050244" }, { "title": "Elevated O-linked N-acetylglucosamine metabolism in pancreatic beta-cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9917327", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Hanover JA, Lai Z, Lee G, Lubas WA, Sato SM", "date": "1999", "pmid": "9917327" }, { "title": "Glycosylation sites flank phosphorylation sites on synapsin I: O-linked N-acetylglucosamine residues are localized within domains mediating synapsin I interactions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10386995", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Cole RN, Hart GW", "date": "1999", "pmid": "10386995" }, { "title": "SV40 large T antigen is modified with O-linked N-acetylglucosamine but not with other forms of glycosylation.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9499386", "journal": "Glycobiology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Medina L, Grove K, Haltiwanger RS", "date": "1998", "pmid": "9499386" }, { "title": "Reduction of O-linked N-acetylglucosamine-modified assembly protein-3 in Alzheimer's disease.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9502801", "journal": "The Journal of neuroscience : the official journal of the Society for Neuroscience", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Yao PJ, Coleman PD", "date": "1998", "pmid": "9502801" }, { "title": "A subpopulation of estrogen receptors are modified by O-linked N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8999954", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Jiang MS, Hart GW", "date": "1997", "pmid": "8999954" }, { "title": "Reduced O glycosylation of Sp1 is associated with increased proteasome susceptibility.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9111324", "journal": "Molecular and cellular biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Han I, Kudlow JE", "date": "1997", "pmid": "9111324" }, { "title": "Mitotic arrest with nocodazole induces selective changes in the level of O-linked N-acetylglucosamine and accumulation of incompletely processed N-glycans on proteins from HT29 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9079710", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Haltiwanger RS, Philipsberg GA", "date": "1997", "pmid": "9079710" }, { "title": "O glycosylation of an Sp1-derived peptide blocks known Sp1 protein interactions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9343410", "journal": "Molecular and cellular biology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Roos MD, Su K, Baker JR, Kudlow JE", "date": "1997", "pmid": "9343410" }, { "title": "An in vivo approach for the identification of acceptor sites for O-glycosyltransferases: motifs for the addition of O-GlcNAc in Dictyostelium discoideum.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9092834", "journal": "Biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Jung E, Gooley AA, Packer NH, Slade MB, Williams KL, Dittrich W", "date": "1997", "pmid": "9092834" }, { "title": "Clonality and stability of the p53 gene in human astrocytic tumor cells: quantitative analysis of p53 gene mutations by yeast functional assay.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8707423", "journal": "International journal of cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Tada M, Iggo RD, Ishii N, Shinohe Y, Sakuma S, Estreicher A, Sawamura Y, Abe H", "date": "1996", "pmid": "8707423" }, { "title": "Cytoplasmic O-GlcNAc modification of the head domain and the KSP repeat motif of the neurofilament protein neurofilament-H.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8702840", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Dong DL, Xu ZS, Hart GW, Cleveland DW", "date": "1996", "pmid": "8702840" }, { "title": "Dynamic O-GlcNAcylation of the small heat shock protein alpha B-crystallin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8639509", "journal": "Biochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Roquemore EP, Chevrier MR, Cotter RJ, Hart GW", "date": "1996", "pmid": "8639509" }, { "title": "High molecular weight microtubule-associated proteins contain O-linked-N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8647865", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Ding M, Vandre DD", "date": "1996", "pmid": "8647865" }, { "title": "Regulation of specific DNA binding by p53: evidence for a role for O-glycosylation and charged residues at the carboxy-terminus.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8632915", "journal": "Oncogene", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Shaw P, Freeman J, Bovey R, Iggo R", "date": "1996", "pmid": "8632915" }, { "title": "Identification of O-linked N-acetylglucosamine modification of ankyrinG isoforms targeted to nodes of Ranvier.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8940148", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Zhang X, Bennett V", "date": "1996", "pmid": "8940148" }, { "title": "Beta-amyloid precursor protein is modified with O-linked N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7650762", "journal": "Journal of neuroscience research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Griffith LS, Mathes M, Schmitz B", "date": "1995", "pmid": "7650762" }, { "title": "Glycosylation of the c-Myc transactivation domain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7753821", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Chou TY, Dang CV, Hart GW", "date": "1995", "pmid": "7753821" }, { "title": "O-linked N-acetylglucosamine is upregulated in Alzheimer brains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7646495", "journal": "Biochemical and biophysical research communications", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Griffith LS, Schmitz B", "date": "1995", "pmid": "7646495" }, { "title": "The serine-rich Entamoeba histolytica protein is a phosphorylated membrane protein containing O-linked terminal N-acetylglucosamine residues.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7876162", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Stanley SL Jr, Tian K, Koester JP, Li E", "date": "1995", "pmid": "7876162" }, { "title": "Identification and mutational analysis of the glycosylation sites of human keratin 18.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7538124", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Ku NO, Omary MB", "date": "1995", "pmid": "7538124" }, { "title": "c-Myc is glycosylated at threonine 58, a known phosphorylation site and a mutational hot spot in lymphomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7642555", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Chou TY, Hart GW, Dang CV", "date": "1995", "pmid": "7642555" }, { "title": "Site-specific glycosylation of the human cytomegalovirus tegument basic phosphoprotein (UL32) at serine 921 and serine 952.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7966627", "journal": "Journal of virology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Greis KD, Gibson W, Hart GW", "date": "1994", "pmid": "7966627" }, { "title": "Clathrin assembly protein AP-3 is phosphorylated and glycosylated on the 50-kDa structural domain.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8063760", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Murphy JE, Hanover JA, Froehlich M, DuBois G, Keen JH", "date": "1994", "pmid": "8063760" }, { "title": "hnRNP G: sequence and characterization of a glycosylated RNA-binding protein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7692398", "journal": "Nucleic acids research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Soulard M, Della Valle V, Siomi MC, Pinol-Roma S, Codogno P, Bauvy C, Bellini M, Lacroix JC, Monod G, Dreyfuss G, et al.", "date": "1993", "pmid": "7692398" }, { "title": "RNA polymerase II is a glycoprotein. Modification of the COOH-terminal domain by O-GlcNAc.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8486697", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Kelly WG, Dahmus ME, Hart GW", "date": "1993", "pmid": "8486697" }, { "title": "Glycosylation of mammalian neurofilaments. Localization of multiple O-linked N-acetylglucosamine moieties on neurofilament polypeptides L and M.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344946", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Dong DL, Xu ZS, Chevrier MR, Cotter RJ, Cleveland DW, Hart GW", "date": "1993", "pmid": "8344946" }, { "title": "The cytoskeletal protein talin is O-glycosylated.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1629228", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Hagmann J, Grob M, Burger MM", "date": "1992", "pmid": "1629228" }, { "title": "Recombinant hirudin, a new anticoagulant, has no effect on faecal blood loss.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1524967", "journal": "British journal of clinical pharmacology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Meyer BH, Luus HG, Muller FO, Badenhorst PN, Lotter MG, Rothig HJ, Grotsch H, Rosenkranz B", "date": "1992", "pmid": "1524967" }, { "title": "The eukaryotic initiation factor 2-associated 67-kDa polypeptide (p67) plays a critical role in regulation of protein synthesis initiation in animal cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1346232", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Ray MK, Datta B, Chakraborty A, Chattopadhyay A, Meza-Keuthen S, Gupta NK", "date": "1992", "pmid": "1346232" }, { "title": "Localization of O-GlcNAc modification on the serum response transcription factor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1512232", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Reason AJ, Morris HR, Panico M, Marais R, Treisman RH, Haltiwanger RS, Hart GW, Kelly WG, Dell A", "date": "1992", "pmid": "1512232" }, { "title": "Characterization and dynamics of O-linked glycosylation of human cytokeratin 8 and 18.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1371281", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Chou CF, Smith AJ, Omary MB", "date": "1992", "pmid": "1371281" }, { "title": "A structural polypeptide of the baculovirus Autographa californica nuclear polyhedrosis virus contains O-linked N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1583718", "journal": "Journal of virology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Whitford M, Faulkner P", "date": "1992", "pmid": "1583718" }, { "title": "Vertebrate lens alpha-crystallins are modified by O-linked N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1730617", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Roquemore EP, Dell A, Morris HR, Panico M, Reason AJ, Savoy LA, Wistow GJ, Zigler JS Jr, Earles BJ, Hart GW", "date": "1992", "pmid": "1730617" }, { "title": "Synapsins contain O-linked N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1901592", "journal": "Journal of neurochemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Luthi T, Haltiwanger RS, Greengard P, Bahler M", "date": "1991", "pmid": "1901592" }, { "title": "Rotavirus NS26 is modified by addition of single O-linked residues of N-acetylglucosamine.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1850914", "journal": "Virology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Gonzalez SA, Burrone OR", "date": "1991", "pmid": "1850914" }, { "title": "Cytologic assessment of nuclear and cytoplasmic O-linked N-acetylglucosamine distribution by using anti-streptococcal monoclonal antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2116002", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Turner JR, Tartakoff AM, Greenspan NS", "date": "1990", "pmid": "2116002" }, { "title": "Relative accessibility of N-acetylglucosamine in trimers of the adenovirus types 2 and 5 fiber proteins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2120471", "journal": "Journal of virology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Mullis KG, Haltiwanger RS, Hart GW, Marchase RB, Engler JA", "date": "1990", "pmid": "2120471" }, { "title": "O-glycosylation of eukaryotic transcription factors: implications for mechanisms of transcriptional regulation.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3139301", "journal": "Cell", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G49108TO", "id": "G49108TO", "database": "GlyTouCan" } ], "authors": "Jackson SP, Tjian R", "date": "1988", "pmid": "3139301" }, { "title": "Monoclonal antibodies identify a group of nuclear pore complex glycoproteins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2437126", "journal": "The Journal of cell biology", "evidence": [ { "url": 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"database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23709", "id": "23709", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3233", "id": "3233", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G01420", "id": "G01420", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91858001", "id": "CID91858001", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291317", "id": "SID252291317", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1193", "id": "1193", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 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"type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", 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"GlycomeDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854395", "id": "CID91854395", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252287002", "id": "SID252287002", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3669.82, "inchi_key": "VPSBQPDGUMLUBI-HPIDIDBMSA-N", "publication": [], "smiles_isomeric": 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"detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N56", "parentid": "N3", "name": "N-glycan_a-D-Neup5Gc_56" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N48", "parentid": "N8", "name": "N-glycan_a-D-Neup5Gc_48" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N55", "parentid": "N6", "name": "N-glycan_a-D-Neup5Gc_55" } ], "composition": [ { "residue": "neugc", "count": 3, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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}, "G20815TK": { "glytoucan_ac": "G20815TK", "mass": 2005.72, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->3)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/4,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5]/1-1-2-3-1-4-1-4-3-1-4/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g3-h1_i2-j1_j4-k1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(3+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/2565", "id": "2565", "database": "UniCarbKB" } ], "taxid": 10116, "name": "Rattus norvegicus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "O43825-1", "gene": "B3GALT2", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q9Y2C3-1", "gene": "B3GALT5", "gene_link": "", "protein_name": "Beta-1,3-galactosyltransferase 5" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+46874", "id": "46874", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+49613", "id": "49613", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8515", "id": "8515", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=937", "id": "937", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1185", "id": "1185", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2524.27, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": 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"attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N19", "parentid": "N4", "name": "N-glycan_a-D-Manp_19" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N20", "parentid": "N4", "name": "N-glycan_a-D-Manp_20" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-3[LFucpa1-4]DGlcpNAcb1-2DManpa1-3[DGalpb1-3[LFucpa1-4]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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"type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+28230", "id": "28230", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9556", "id": "9556", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15189", "id": "15189", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3442.77, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", 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"evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G19710JA", "id": "G19710JA", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36311", "id": "36311", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35811", "id": "35811", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=3489", "id": "3489", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2207.16, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": "" }, "G24501HF": { "glytoucan_ac": "G24501HF", "mass": 2661.95, "iupac": "?-D-NeupAc-(2->?),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": 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"classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1225", "id": "1225", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/1937", "id": "1937", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00742-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00742/annotated", "id": "P00742", "database": "UniCarbKB" } ], "protein_name": "Coagulation factor X", "gene_name": "F10", "position": 221 } ], "mass_pme": 3306.67, "inchi_key": "", "publication": [ { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1937", "id": "1937", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"N6", "name": "N-glycan_a-D-Neup5Ac_13" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N35", "parentid": "N10", "name": "N-glycan_a-D-Neup5Ac_35" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00055MO", "name": "Lactosamine 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/943", "id": "943", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/3467", "id": "3467", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01033-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01033/annotated", "id": "P01033", "database": "UniCarbKB" } ], "protein_name": "Metalloproteinase inhibitor 1", "gene_name": "TIMP1", "position": 53 }, { "uniprot_canonical_ac": "P01033-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01033/annotated", "id": "P01033", "database": "UniCarbKB" } ], "protein_name": "Metalloproteinase inhibitor 1", "gene_name": "TIMP1", "position": 101 } ], "mass_pme": 2582.31, "inchi_key": "", "publication": [ { "title": "Site-specific characterization of glycoprotein carbohydrates by exoglycosidase digestion and laser desorption mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8053566", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3467", "id": "3467", "database": "UniCarbKB" } ], "authors": "Sutton CW, O'Neill JA, Cottrell JS", "date": "1994", "pmid": "8053566" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G20176SH": { "glytoucan_ac": "G20176SH", "mass": 1800.63, "iupac": "alpha-D-NeupAc-(2->3/6)-beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->3)[alpha-D-NeupAc-(2->3/6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/5,9,8/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-3-2-5/a4-b1_b3-c1_b6-g1_c3-d1_c4-e1_g4-h1_f2-e3|e6_i2-h3|h6", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:a-lgal-HEX-1:5|6:d\\n6b:b-dgal-HEX-1:5\\n7b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n8s:n-acetyl\\n9b:b-dglc-HEX-1:5\\n10s:n-acetyl\\n11b:b-dgal-HEX-1:5\\n12b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n13s:n-acetyl\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(3+1)5d\\n5:3o(4+1)6d\\n6:6o(3|6+2)7d\\n7:7d(5+1)8n\\n8:2o(6+1)9d\\n9:9d(2+1)10n\\n10:9o(4+1)11d\\n11:11o(3|6+2)12d\\n12:12d(5+1)13n", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G20176SH", "id": "G20176SH", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+29210", "id": "29210", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8639", "id": "8639", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=925", "id": "925", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1173", "id": "1173", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2249.13, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00054MO", "name": "Sialyl Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" }, { "id": "G00070MO", "name": "Glycosphingolipid Neo-lacto series" } ], "inchi": "" }, "G55507NB": { "glytoucan_ac": "G55507NB", "mass": 1364.5, "iupac": "beta-D-Galp-(1->3)[alpha-L-Fucp-(1->4)]-beta-D-GlcpNAc-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-beta-D-Galp-(1->4)-D-Glc(?->", "wurcs": "WURCS=2.0/4,8,7/[u2122h][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-2-4-3-4-2/a4-b1_b3-c1_b6-f1_c3-d1_c4-e1_f3-g1_f4-h1", "glycoct": "RES\\n1b:x-dglc-HEX-x:x\\n2b:b-dgal-HEX-1:5\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dgal-HEX-1:5\\n6b:a-lgal-HEX-1:5|6:d\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\n10b:b-dgal-HEX-1:5\\nLIN\\n1:1o(4+1)2d\\n2:2o(3+1)3d\\n3:3d(2+1)4n\\n4:3o(3+1)5d\\n5:3o(4+1)6d\\n6:2o(6+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:7o(4+1)10d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G55507NB", "id": "G55507NB", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14896", "id": "14896", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16789", "id": "16789", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+29229", "id": "29229", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5019", "id": "5019", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5020", "id": "5020", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1381", "id": "1381", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1671", "id": "1671", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1700.87, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 8, "motifs": [ { "id": "G00047MO", "name": "Lewis A" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00069MO", "name": "Glycosphingolipid Lacto series" } ], "inchi": "" }, "G30062BR": { "glytoucan_ac": "G30062BR", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91861524", "id": "CID91861524", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295542", "id": "SID252295542", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4564.28, "inchi_key": "FQKKEMOSJMMPCP-GAZFMKGQSA-N", "publication": [], "smiles_isomeric": 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"Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L9W6-1", "gene": "B4GALNT3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q76KP1-1", "gene": "B4GALNT4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { 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"MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q6L8S8-1", "gene": "B4galnt3", "gene_link": "", "protein_name": "Beta-1,4-N-acetylgalactosaminyltransferase 3" }, { "uniprot_canonical_ac": "Q766D5-1", "gene": "B4galnt4", "gene_link": "", "protein_name": "N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 1" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "xxx/yyy/GOG472", "id": "GOG472", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13991", "id": "13991", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2031", "id": "2031", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24979", "id": "24979", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91859712", "id": "CID91859712", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252293359", "id": "SID252293359", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1167", "id": "1167", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 165 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 } ], "mass_pme": 3201.64, "inchi_key": "AKWPSQWQDBXCDL-ZBRVIVBXSA-N", "publication": [ { "title": "Structural elucidation of a variety of GalNAc-containing N-linked oligosaccharides from human urinary kallidinogenase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8416919", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1167", "id": "1167", "database": "UniCarbKB" } ], "authors": "Tomiya N, Awaya J, Kurono M, Hanzawa H, Shimada I, Arata Y, Yoshida T, Takahashi N", "date": "1993", "pmid": "8416919" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)NC(=O)C)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O)NC(=O)C)O)NC(=O)C)O)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": 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"name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N30", "parentid": "N5", "name": "N-glycan_b-D-GalpNAc_30" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 8, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpNAcb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00057MO", "name": "LacDiNAc" } ], "inchi": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1211", "id": "1211", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5361", "id": "5361", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3119.59, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic 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"protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "xxx/yyy/GOG460", "id": "GOG460", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13956", "id": "13956", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24937", "id": "24937", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845656", "id": "CID91845656", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276582", "id": "SID252276582", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2496.27, "inchi_key": "OLTGIPHLDUXMIB-KBTMZASGSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H]([C@@H]([C@H](O[C@H]1O)CO)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)NC(=O)C)O)O)O[C@H]7[C@@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@H]([C@H](O8)CO)O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", 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"detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N78", "parentid": "N9", "name": "N-glycan_b-D-Galp_78" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2[DGalpb1-3DGlcpNAcb1-6]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" } ], "inchi": 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], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 241 } ], "mass_pme": 4564.28, "inchi_key": "", "publication": [ { "title": "Purification and characterization of the MUC1 mucin-type glycoprotein, epitectin, from human urine: structures of the major oligosaccharide alditols.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9530955", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7752", "id": "7752", "database": "UniCarbKB" } ], "authors": "Bhavanandan VP, Zhu Q, Yamakami K, Dilulio NA, Nair S, Capon C, Lemoine J, Fournet B", "date": "1998", "pmid": "9530955" }, { "title": "O-glycosylated species of natural human tumor-necrosis factor-alpha.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8631363", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7752", "id": "7752", "database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7752", "id": "7752", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": 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human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" }, { "title": "Human serum amyloid P component is an invariant constituent of amyloid deposits and has a uniquely homogeneous glycostructure.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8202534", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Pepys MB, Rademacher TW, Amatayakul-Chantler S, Williams P, Noble GE, Hutchinson WL, Hawkins PN, Nelson SR, Gallimore JR, Herbert J, et al.", "date": "1994", "pmid": "8202534" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. Application of gradient-enhanced natural abundance 1H-13C HSQC and HSQC-TOCSY to the alpha-subunit of human chorionic gonadotropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8026573", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "de Beer T, van Zuylen CW, Hard K, Boelens R, Kaptein R, Kamerling JP, Vliegenthart JF", "date": "1994", "pmid": "8026573" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "NMR investigations of the N-linked oligosaccharides at individual glycosylation sites of human lutropin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1991473", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG, Nimtz M", "date": "1991", "pmid": "1991473" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Oligosaccharide structures present on asparagine-289 of recombinant human plasminogen expressed in a Chinese hamster ovary cell line.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1899031", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "1899031" }, { "title": "Asparagine-linked oligosaccharide processing in lepidopteran insect cells. Temporal dependence of the nature of the oligosaccharides assembled on asparagine-289 of recombinant human plasminogen produced in baculovirus vector infected Spodoptera frugiperda (IPLB-SF-21AE) cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2059624", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2059624" }, { "title": "Structures of the asparagine-289-linked oligosaccharides assembled on recombinant human plasminogen expressed in a Mamestra brassicae cell line (IZD-MBO503).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2065054", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1107", "id": "1107", "database": "UniCarbKB" } ], "authors": "Davidson DJ, Castellino FJ", "date": "1991", "pmid": "2065054" }, { "title": "Oligosaccharide processing in the expression of human plasminogen cDNA by 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"beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,12,11/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-4-2-5-6-5/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e3-f1_e4-g1_h2-i1_i3-j1_i4-k1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\n10b:b-dgal-HEX-1:5\\n11b:a-dman-HEX-1:5\\n12b:b-dglc-HEX-1:5\\n13s:n-acetyl\\n14b:a-lgal-HEX-1:5|6:d\\n15b:b-dgal-HEX-1:5\\n16b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:7o(4+1)10d\\n10:5o(6+1)11d\\n11:11o(2+1)12d\\n12:12d(2+1)13n\\n13:12o(3+1)14d\\n14:12o(4+1)15d\\n15:1o(6+1)16d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G68765US", "id": "G68765US", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol 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"UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q6P4F1-1", "gene": "FUT10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q495W5-1", "gene": "FUT11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "P21217-1", "gene": "FUT3", "gene_link": "", "protein_name": "Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q5F2L2-1", "gene": "Fut10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q8BHC9-1", "gene": "Fut11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { 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"C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@H]([C@H]([C@@H]([C@H](CO)NC(=O)C)O)O[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O[C@H]3[C@H]([C@H]([C@@H]([C@H](O3)CO[C@@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO)O)O)O[C@H]5[C@@H]([C@H]([C@@H]([C@H](O5)CO)O[C@H]6[C@@H]([C@H]([C@H]([C@H](O6)CO)O)O)O)O[C@H]7[C@H]([C@@H]([C@@H]([C@@H](O7)C)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N41", "parentid": "N2", "name": "N-glycan_a-L-Fucp_41" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C80H136N4O58/c1-18-38(98)48(108)55(115)73(123-18)121-16-26(97)61(41(101)25(8-85)81-21(4)93)134-70-35(82-22(5)94)47(107)62(31(13-90)130-70)135-78-60(120)67(140-80-69(54(114)45(105)30(12-89)129-80)142-72-37(84-24(7)96)66(139-75-57(117)50(110)40(100)20(3)125-75)64(33(15-92)132-72)137-77-59(119)52(112)43(103)28(10-87)127-77)46(106)34(133-78)17-122-79-68(53(113)44(104)29(11-88)128-79)141-71-36(83-23(6)95)65(138-74-56(116)49(109)39(99)19(2)124-74)63(32(14-91)131-71)136-76-58(118)51(111)42(102)27(9-86)126-76/h18-20,25-80,85-92,97-120H,8-17H2,1-7H3,(H,81,93)(H,82,94)(H,83,95)(H,84,96)/t18-,19-,20-,25-,26+,27+,28+,29+,30+,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42-,43-,44+,45+,46+,47+,48+,49+,50+,51-,52-,53-,54-,55-,56-,57-,58+,59+,60-,61+,62+,63+,64+,65+,66+,67-,68-,69-,70-,71-,72-,73+,74-,75-,76-,77-,78-,79-,80+/m0/s1" }, "G61457CY": { "glytoucan_ac": "G61457CY", "mass": 2255.79, "iupac": "alpha-D-NeupGc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Galp-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/8,12,11/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCCO/3=O][a2112h-1a_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-6-4-2-5-7-8/a4-b1_a6-l1_b4-c1_c3-d1_c6-h1_d2-e1_e4-f1_f6-g2_h2-i1_i4-j1_j3-k1", "glycoct": 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"protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" } ], "crossref": [ { "url": "xxx/yyy/GOG334", "id": "GOG334", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13554", "id": "13554", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/583", "id": "583", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23529", "id": "23529", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91854174", "id": "CID91854174", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252286723", "id": "SID252286723", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1157", "id": "1157", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 165 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 } ], "mass_pme": 2507.29, "inchi_key": "BZVUKRZUTLVMPM-MGPCAMEQSA-N", "publication": [ { "title": "Structural elucidation of a variety of GalNAc-containing N-linked oligosaccharides from human urinary kallidinogenase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8416919", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1157", "id": "1157", "database": "UniCarbKB" } ], "authors": "Tomiya N, Awaya J, Kurono M, Hanzawa H, Shimada I, Arata Y, Yoshida T, Takahashi N", "date": "1993", "pmid": "8416919" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O)O)NC(=O)C)O)O[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O)O)O)NC(=O)C)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)NC(=O)C)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": 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{ "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": 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{ "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_20146_D000", "id": "carbNlink_20146_D000", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_30032_A", "id": "carbNlink_30032_A", "database": "CFG" }, { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_40311_D000", "id": "carbNlink_40311_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=17495", "id": "17495", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00412", "id": "G00412", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID71297513", "id": "CID71297513", "database": "PubChem" }, { "url": 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"motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C48H81N3O36/c1-11(58)49-21-28(65)37(17(7-55)76-42(21)74)83-43-22(50-12(2)59)29(66)39(19(9-57)80-43)85-47-36(73)40(27(64)20(82-47)10-75-45-34(71)31(68)24(61)14(4-52)77-45)86-48-41(33(70)26(63)16(6-54)79-48)87-44-23(51-13(3)60)30(67)38(18(8-56)81-44)84-46-35(72)32(69)25(62)15(5-53)78-46/h14-48,52-57,61-74H,4-10H2,1-3H3,(H,49,58)(H,50,59)(H,51,60)/t14-,15-,16-,17-,18-,19-,20-,21-,22-,23-,24-,25+,26-,27-,28-,29-,30-,31+,32+,33+,34+,35-,36+,37-,38-,39-,40+,41+,42?,43+,44+,45+,46+,47+,48-/m1/s1" }, "G70947EQ": { "glytoucan_ac": "G70947EQ", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", 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IgM in plants.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/24706782", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7868", "id": "7868", "database": "UniCarbKB" } ], "authors": "Loos A, Gruber C, Altmann F, Mehofer U, Hensel F, Grandits M, Oostenbrink C, Stadlmayr G, Furtmuller PG, Steinkellner H", "date": "2014", "pmid": "24706782" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": 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"detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"database": "GlyTouCan" } ], "authors": "Irazoqui FJ, Sendra VG, Lardone RD, Nores GA", "date": "2005", "pmid": "16033536" }, { "title": "Polyvalent GalNAcalpha1-->Ser/Thr (Tn) and Galbeta1-->3GalNAcalpha1-->Ser/Thr (T alpha) as the most potent recognition factors involved in Maclura pomifera agglutinin-glycan interactions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/15864746", "journal": "Journal of biomedical science", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Wu AM", "date": "2005", "pmid": "15864746" }, { "title": "Distribution of HPV infection and tumour markers in cervical intraepithelial neoplasia from cone biopsies of Mozambican women.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/15623485", "journal": "Journal of clinical pathology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Carrilho C, 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A reevaluation.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8625037", "journal": "Cancer", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Cao Y, Karsten UR, Liebrich W, Haensch W, Springer GF, Schlag PM", "date": "1995", "pmid": "8625037" }, { "title": "A new monoclonal antibody (A78-G/A7) to the Thomsen-Friedenreich pan-tumor antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7539400", "journal": "Hybridoma", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Karsten U, Butschak G, Cao Y, Goletz S, Hanisch FG", "date": "1995", "pmid": "7539400" }, { "title": "Anti-Thomsen-Friedenreich (T) antibody-based ELISA and its application to human breast carcinoma detection.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8551046", "journal": "Journal of immunological methods", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Desai PR, Ujjainwala LH, Carlstedt SC, Springer GF", "date": "1995", "pmid": "8551046" }, { "title": "Simple mucins (T, sialosyl-T, Tn and sialosyl-Tn) are not diagnostic for malignant breast lesions.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7516636", "journal": "Anticancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Reed W, Bryne M, Clausen H, Dabelsteen E, Nesland JM", "date": "1994", "pmid": "7516636" }, { "title": "Assignment of O-glycan attachment sites to the hinge-like regions of human lysosomal membrane glycoproteins lamp-1 and lamp-2.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8323299", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Carlsson SR, Lycksell PO, Fukuda M", "date": "1993", "pmid": "8323299" }, { "title": "Biosynthesis and secretion of human interleukin 2 glycoprotein variants from baculovirus-infected Sf21 cells. Characterization of polypeptides and posttranslational modifications.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8344280", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Grabenhorst E, Hofer B, Nimtz M, Jager V, Conradt HS", "date": "1993", "pmid": "8344280" }, { "title": "An improved approach to the analysis of the structure of small oligosaccharides of glycoproteins: application to the O-linked oligosaccharides from human glycophorin A.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8384526", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Krotkiewski H, Lisowska E, Nilsson G, Gronberg G, Nilsson B", "date": "1993", "pmid": "8384526" }, { "title": "Studies on the Thomsen-Friedenreich antigen in human colon with the lectin Amaranthin. Normal and neoplastic epithelium express only cryptic T antigen.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1370965", "journal": "Laboratory investigation; a journal of technical methods and pathology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Sata T, Roth J, Zuber C, Stamm B, Rinderle SJ, Goldstein IJ, Heitz PU", "date": "1992", "pmid": "1370965" }, { "title": "Human urinary bladder carcinoma glycoconjugates expressing T-(Gal beta(1-3)GalNAc alpha 1-O-R) and T-like antigens: a comparative study using peanut agglutinin and poly- and monoclonal antibodies.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1516058", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Langkilde NC, Wolf H, Clausen H, Orntoft TF", "date": "1992", "pmid": "1516058" }, { "title": "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1820200", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Weisshaar G, Hiyama J, Renwick AG", "date": "1991", "pmid": "1820200" }, { "title": "Altered O-glycan synthesis in lymphocytes from patients with Wiskott-Aldrich syndrome.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2033371", "journal": "The Journal of experimental medicine", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Piller F, Le Deist F, Weinberg KI, Parkman R, Fukuda M", "date": "1991", "pmid": "2033371" }, { "title": "Expression patterns of the T antigen and the cryptic T antigen in rat fetuses: detection with the lectin amaranthin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2335739", "journal": "The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Sata T, Zuber C, Rinderle SJ, Goldstein IJ, Roth J", "date": "1990", "pmid": "2335739" }, { "title": "Glycine to aspartic acid mutations at codon 13 of the c-Ki-ras gene in human gastrointestinal cancers.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2404571", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Nagata Y, Abe M, Kobayashi K, Yoshida K, Ishibashi T, Naoe T, Nakayama E, Shiku H", "date": "1990", "pmid": "2404571" }, { "title": "Expression of human interleukin-2 in recombinant baby hamster kidney, Ltk-, and Chinese hamster ovary cells. 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Distribution of cryptic and exposed TF antigens on murine lymphocytes from different lymphoid organs: detection with an anti-TF monoclonal antibody and peanut agglutinin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2736629", "journal": "Cellular immunology", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Wolf MF, Schmitt HR, Schumacher K", "date": "1989", "pmid": "2736629" }, { "title": "Expression of Tn, sialosyl-Tn, and T antigens in human colon cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2908846", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00031MO", "id": "G00031MO", "database": "GlyTouCan" } ], "authors": "Itzkowitz SH, Yuan M, Montgomery CK, Kjeldsen T, Takahashi HK, Bigbee WL, Kim YS", "date": "1989", "pmid": "2908846" }, { "title": "Chemical structure of neutral sugar chains isolated from human mature milk kappa-casein.", "url": 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Boland CR, Kim YD, Tomita JT, Palekar A, Bennington JL, Trump BF, Kim YS", "date": "1986", "pmid": "3731131" }, { "title": "Structural variations of O-linked oligosaccharides present in leukosialin isolated from erythroid, myeloid, and T-lymphoid cell lines.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2943741", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Carlsson SR, Sasaki H, Fukuda M", "date": "1986", "pmid": "2943741" }, { "title": "Comparative study of glycophorin A derived O-glycans from human Cad, Sd(a+) and Sd(a-) erythrocytes.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/4091823", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4", "id": "4", "database": "UniCarbKB" } ], "authors": "Blanchard D, Capon C, Leroy Y, Cartron JP, Fournet B", "date": "1985", "pmid": "4091823" }, { "title": "Comparative 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"url": "https://glyconnect.expasy.org/browser/proteins/720", "id": "720", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/7585", "id": "7585", "database": "UniCarbKB" }, { "url": "http://www.unicarbkb.org/structure/7717", "id": "7717", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" }, { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 211 }, { "uniprot_canonical_ac": "P00738-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" }, { "url": "http://unicarbkb.org/proteinsummary/P00738/annotated", "id": "P00738", "database": "UniCarbKB" } ], "protein_name": "Haptoglobin", "gene_name": "HP", "position": 241 } ], "mass_pme": 2945.5, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G57970NA": { "glytoucan_ac": "G57970NA", "mass": 2587.92, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": 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"url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=36639", "id": "36639", "database": "GlycomeDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91855782", "id": "CID91855782", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252288670", "id": "SID252288670", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3218.62, "inchi_key": "ZGRFCJOMAOKOLB-JGHNGCCPSA-N", "publication": [], "smiles_isomeric": 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"N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 2, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2035", "id": "2035", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 } ], "mass_pme": 5161.62, "inchi_key": "", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4820", "id": "4820", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 11, "name": "Hexose" }, { "residue": "hexnac", "count": 11, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 23, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G92777SG": { "glytoucan_ac": "G92777SG", "mass": 2005.72, "iupac": 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"position": 101 } ], "mass_pme": 3119.59, "inchi_key": "", "publication": [ { "title": "Site-specific characterization of glycoprotein carbohydrates by exoglycosidase digestion and laser desorption mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8053566", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3495", "id": "3495", "database": "UniCarbKB" } ], "authors": "Sutton CW, O'Neill JA, Cottrell JS", "date": "1994", "pmid": "8053566" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { 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"subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+27215", "id": "27215", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+49648", "id": "49648", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=16115", "id": "16115", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 3598.82, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G82955EQ": { "glytoucan_ac": "G82955EQ", "mass": 1948.7, "iupac": "alpha-D-Galp-(1->3)[alpha-L-Fucp-(1->2)]-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][a2112h-1a_1-5]/1-1-2-3-1-4-5-6-3-1-4/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_e4-f1_f2-g1_f3-h1_i2-j1_j4-k1", "glycoct": 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[], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2935", "id": "2935", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/4349", "id": "4349", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 2425.24, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpa1-3[LFucpa1-2]DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 11, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00046MO", "name": "Galalpha1-3Gal epitope" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G43677XO": { "glytoucan_ac": "G43677XO", "mass": 1728.61, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,9,8/[a2122h-1x_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-5-6-3-4-5/a4-b1_b3-c1_b6-g1_c2-d1_d4-e1_e6-f2_g2-h1_h4-i1", "glycoct": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=19020", "id": "19020", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G02757", "id": "G02757", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID71297632", "id": "CID71297632", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252282796", "id": "SID252282796", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 2163.09, "inchi_key": "RMXMBZSNGMEPGA-BPTCBBTBSA-N", "publication": [], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4O[C@H]5[C@@H]([C@H](O[C@H]([C@H]5O)O[C@@H]6[C@H](OC([C@@H]([C@H]6O)NC(=O)C)O)CO)CO[C@@H]7[C@H]([C@H]([C@@H]([C@H](O7)CO)O)O)O[C@H]8[C@@H]([C@H]([C@@H]([C@H](O8)CO)O[C@H]9[C@@H]([C@H]([C@H]([C@H](O9)CO)O)O)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C65H108N4O49/c1-15(77)66-29-19(81)5-65(64(100)101,118-52(29)33(83)20(82)6-70)103-14-28-37(87)43(93)47(97)60(111-28)113-51-26(12-76)109-58(32(41(51)91)69-18(4)80)117-55-45(95)36(86)23(9-73)107-63(55)115-53-38(88)27(110-61(48(53)98)114-49-24(10-74)104-56(99)30(39(49)89)67-16(2)78)13-102-62-54(44(94)35(85)22(8-72)106-62)116-57-31(68-17(3)79)40(90)50(25(11-75)108-57)112-59-46(96)42(92)34(84)21(7-71)105-59/h19-63,70-76,81-99H,5-14H2,1-4H3,(H,66,77)(H,67,78)(H,68,79)(H,69,80)(H,100,101)/t19-,20+,21+,22+,23+,24+,25+,26+,27+,28+,29+,30+,31+,32+,33+,34-,35+,36+,37-,38+,39+,40+,41+,42-,43-,44-,45-,46+,47+,48-,49+,50+,51+,52+,53-,54-,55-,56?,57-,58-,59-,60-,61-,62-,63+,65+/m0/s1" }, "G89877QI": { "glytoucan_ac": "G89877QI", "mass": 2879.01, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-5-1-4-5-3-1-4-5/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i3-j2_k2-l1_l4-m1_m6-n2", "glycoct": 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"1615", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase 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"Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2060", "id": "2060", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2063", "id": "2063", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2064", "id": "2064", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+25183", "id": "25183", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+29111", "id": "29111", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36013", "id": "36013", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36430", "id": "36430", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3927", "id": "3927", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+4448", "id": "4448", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7986", "id": "7986", "database": "CarbBank" }, { "url": "xxx/yyy/GOG55", "id": "GOG55", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=3166", "id": "3166", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1934", "id": "1934", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4266", "id": "4266", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7987", "id": "7987", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=8070", "id": "8070", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G10726", "id": "G10726", "database": "KEGG Glycan" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11877", "id": "G11877", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91862691", "id": "CID91862691", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296950", "id": "SID252296950", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01011-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01011/annotated", "id": "P01011", "database": "UniCarbKB" } ], "protein_name": "Alpha-1-antichymotrypsin", "gene_name": "SERPINA3", "position": 127 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 138 }, { "uniprot_canonical_ac": "P02787-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02787/annotated", "id": "P02787", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "TF", "position": 630 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 762 }, { "uniprot_canonical_ac": "P02787-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02787/annotated", "id": "P02787", "database": "UniCarbKB" } ], "protein_name": "Serotransferrin", "gene_name": "TF", "position": 432 }, { "uniprot_canonical_ac": "P01011-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01011/annotated", "id": "P01011", "database": "UniCarbKB" } ], "protein_name": "Alpha-1-antichymotrypsin", "gene_name": "SERPINA3", "position": 93 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 397 }, { "uniprot_canonical_ac": "P00450-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00450/annotated", "id": "P00450", "database": "UniCarbKB" } ], "protein_name": "Ceruloplasmin", "gene_name": "CP", "position": 358 } ], "mass_pme": 3579.79, "inchi_key": "GPOYYCMLRDLHFB-UANHXWJVSA-N", "publication": [ { "title": "N-glycan patterns of human transferrin produced in Trichoplusia ni insect cells: effects of mammalian galactosyltransferase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10929010", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Ailor E, Takahashi N, Tsukamoto Y, Masuda K, Rahman BA, Jarvis DL, Lee YC, Betenbaugh MJ", "date": "2000", "pmid": "10929010" }, { "title": "X-ray crystallography and mass spectroscopy reveal that the N-lobe of human transferrin expressed in Pichia pastoris is folded correctly but is glycosylated on serine-32.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10029548", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Bewley MC, Tam BM, Grewal J, He S, Shewry S, Murphy ME, Mason AB, Woodworth RC, Baker EN, MacGillivray RT", "date": "1999", "pmid": "10029548" }, { "title": "Carbohydrate deficient glycoprotein syndrome type II: a deficiency in Golgi localised N-acetyl-glucosaminyltransferase II.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7944531", "journal": "Archives of disease in childhood", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Jaeken J, Schachter H, Carchon H, De Cock P, Coddeville B, Spik G", "date": "1994", "pmid": "7944531" }, { "title": "Alteration of asparagine-linked glycosylation in serum transferrin of patients with hepatocellular carcinoma.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8174273", "journal": "Clinica chimica acta; international journal of clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Matsumoto K, Maeda Y, Kato S, Yuki H", "date": "1994", "pmid": "8174273" }, { "title": "N-glycosylation site mapping of human serotransferrin by serial lectin affinity chromatography, fast atom bombardment-mass spectrometry, and 1H nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1456441", "journal": "Analytical biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Fu D, van Halbeek H", "date": "1992", "pmid": "1456441" }, { "title": "Structure determination of the glycans of human-serum alpha 1-antichymotrypsin using 1H-NMR spectroscopy and deglycosylation by N-glycanase.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2015821", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Laine A, Hachulla E, Strecker G, Michalski JC, Wieruszeski JM", "date": "1991", "pmid": "2015821" }, { "title": "The structures and microheterogeneity of the carbohydrate chains of human plasma ceruloplasmin. A study employing 500-MHz 1H-NMR spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7096333", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Endo M, Suzuki K, Schmid K, Fournet B, Karamanos Y, Montreuil J, Dorland L, van Halbeek H, Vliegenthart JF", "date": "1982", "pmid": "7096333" }, { "title": "Structural studies of asparagine-linked sugar chains of human ceruloplasmin. Structural characteristics of the triantennary complex type sugar chains of human plasma glycoproteins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7451505", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1615", "id": "1615", "database": "UniCarbKB" } ], "authors": "Yamashita K, Liang CJ, Funakoshi S, Kobata A", "date": "1981", "pmid": "7451505" } ], "smiles_isomeric": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+20598", "id": "20598", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+22699", "id": "22699", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+2934", "id": "2934", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+33070", "id": "33070", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+37141", "id": "37141", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+40540", "id": "40540", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+42859", "id": "42859", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7204", "id": "7204", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7205", "id": "7205", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=13616", "id": "13616", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23927", "id": "23927", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2629.33, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": 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alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": 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"taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": 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"evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G73567NI", "id": "G73567NI", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P21217-1", "gene": "FUT3", "gene_link": "", "protein_name": "Galactoside 3(4)-L-fucosyltransferase" }, { "uniprot_canonical_ac": "P22083-1", "gene": "FUT4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q11128-1", "gene": "FUT5", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 5" }, { "uniprot_canonical_ac": "P51993-1", "gene": "FUT6", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09327-1", "gene": "MGAT3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q09328-1", "gene": "MGAT5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q3V5L5-1", "gene": "MGAT5B", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol 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"UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10470-1", "gene": "Mgat3", "gene_link": "", "protein_name": "Beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q8R4G6-1", "gene": "Mgat5", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q765H6-1", "gene": "Mgat5b", "gene_link": "", "protein_name": "Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B" } ], "crossref": [ { "url": "xxx/yyy/GOG891", "id": "GOG891", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=14268", "id": "14268", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/2405", "id": "2405", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25706", "id": "25706", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91845162", "id": "CID91845162", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252276008", "id": "SID252276008", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/7386", "id": "7386", "database": "UniCarbKB" } ], "glycoprotein": [], "mass_pme": 3263.67, "inchi_key": "CSRDFDLJKBEDGR-PMJMRPNZSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O[C@H]8[C@H]([C@@H]([C@@H]([C@@H](O8)C)O)O)O)NC(=O)C)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)NC(=O)C)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O)O)NC(=O)C)O[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N11", "parentid": "NC", "name": "N-glycan_b-D-GlcpNAc_11" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N43", "parentid": "N9", "name": "N-glycan_a-L-Fucp_43" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-6]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C102H170N6O73/c1-22-49(124)62(137)70(145)94(156-22)154-20-41-79(59(134)43(88(152)159-41)103-25(4)118)171-91-45(105-27(6)120)60(135)78(37(16-115)166-91)173-100-76(151)85(179-102-87(68(143)56(131)35(14-113)164-102)181-92-46(106-28(7)121)61(136)77(36(15-114)167-92)172-97-73(148)65(140)53(128)32(11-110)161-97)82(174-90-44(104-26(5)119)58(133)52(127)31(10-109)160-90)42(170-100)21-155-101-86(180-93-48(108-30(9)123)84(178-96-72(147)64(139)51(126)24(3)158-96)81(39(18-117)168-93)176-99-75(150)67(142)55(130)34(13-112)163-99)69(144)57(132)40(169-101)19-153-89-47(107-29(8)122)83(177-95-71(146)63(138)50(125)23(2)157-95)80(38(17-116)165-89)175-98-74(149)66(141)54(129)33(12-111)162-98/h22-24,31-102,109-117,124-152H,10-21H2,1-9H3,(H,103,118)(H,104,119)(H,105,120)(H,106,121)(H,107,122)(H,108,123)/t22-,23-,24-,31+,32+,33+,34+,35+,36+,37+,38+,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53-,54-,55-,56+,57+,58+,59+,60+,61+,62+,63+,64+,65-,66-,67-,68-,69-,70-,71-,72-,73+,74+,75+,76-,77+,78+,79+,80+,81+,82+,83+,84+,85+,86-,87-,88+,89+,90-,91-,92-,93-,94+,95-,96-,97-,98-,99-,100-,101-,102+/m0/s1" }, "G70374BH": { "glytoucan_ac": "G70374BH", "mass": 1626.61, "iupac": "beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,9,8/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-4-2-5-6/a4-b1_a6-i1_b4-c1_c3-d1_c6-f1_d2-e1_f2-g1_g4-h1", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:5o(6+1)9d\\n9:9o(2+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:1o(6+1)13d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G70374BH", "id": "G70374BH", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" }, { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G70374BH", "id": "G70374BH", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { 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"7774", "database": "UniCarbKB" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7774", "id": "7774", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 196 }, { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 180 } ], "mass_pme": 3059.57, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G71527NE": { "glytoucan_ac": "G71527NE", "mass": 3025.07, "iupac": "?-L-Fucp-(1->?),?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)[?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)]-alpha-D-Manp-(1->3)[?-D-NeupAc-(2->?)-?-D-Galp-(1->?)-?-D-GlcpNAc-(1->?)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,15,14/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1x_1-5_2*NCC/3=O][a2112h-1x_1-5][Aad21122h-2x_2-6_5*NCC/3=O][a1221m-1x_1-5]/1-1-2-3-4-5-6-4-5-6-3-4-5-6-7/a4-b1_b4-c1_c3-d1_c6-k1_d?-e1_d?-h1_e?-f1_f?-g2_h?-i1_i?-j2_k?-l1_l?-m1_m?-n2_o1-a?|b?|c?|d?|e?|f?|g?|h?|i?|j?|k?|l?|m?|n?}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:x-dglc-HEX-1:5\\n8b:x-dgal-HEX-1:5\\n9b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n10s:n-acetyl\\n11s:n-acetyl\\n12b:x-dglc-HEX-1:5\\n13b:x-dgal-HEX-1:5\\n14b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n15s:n-acetyl\\n16s:n-acetyl\\n17b:a-dman-HEX-1:5\\n18b:x-dglc-HEX-1:5\\n19b:x-dgal-HEX-1:5\\n20b:x-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n21s:n-acetyl\\n22s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(-1+1)7d\\n7:7o(-1+1)8d\\n8:8o(-1+2)9d\\n9:9d(5+1)10n\\n10:7d(2+1)11n\\n11:6o(-1+1)12d\\n12:12o(-1+1)13d\\n13:13o(-1+2)14d\\n14:14d(5+1)15n\\n15:12d(2+1)16n\\n16:5o(6+1)17d\\n17:17o(-1+1)18d\\n18:18o(-1+1)19d\\n19:19o(-1+2)20d\\n20:20d(5+1)21n\\n21:18d(2+1)22n\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|8|9|12|13|14|17|18|19|20\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n23b:x-lgal-HEX-1:5|6:d", "species": [ { "evidence": [ { "url": 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"Coagulation factor VII", "gene_name": "F7", "position": 382 } ], "mass_pme": 3753.88, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G77195RI": { "glytoucan_ac": "G77195RI", "mass": 2153.8, "iupac": "beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2/4)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2/4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,12,11/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a1221m-1a_1-5][a2112h-1b_1-5]/1-2-3-4-2-5-6-2-6-4-2-6/a4-b1_b4-c1_c3-d1_c6-j1_e3-f1_e4-g1_h4-i1_j2-k1_k4-l1_e1-d2|d4_h1-d2|d4", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-lgal-HEX-1:5|6:d\\n10b:b-dgal-HEX-1:5\\n11b:b-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:b-dgal-HEX-1:5\\n14b:a-dman-HEX-1:5\\n15b:b-dglc-HEX-1:5\\n16s:n-acetyl\\n17b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2|4+1)7d\\n7:7d(2+1)8n\\n8:7o(3+1)9d\\n9:7o(4+1)10d\\n10:6o(2|4+1)11d\\n11:11d(2+1)12n\\n12:11o(4+1)13d\\n13:5o(6+1)14d\\n14:14o(2+1)15d\\n15:15d(2+1)16n\\n16:15o(4+1)17d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G77195RI", "id": "G77195RI", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+34919", "id": "34919", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7428", "id": "7428", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35852", "id": "35852", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16822", "id": "16822", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=6685", "id": "6685", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2686.39, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 12, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, "G93602DI": { "glytoucan_ac": "G93602DI", "mass": 2298.84, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,12,11/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-2-5-4-2-5-6/a4-b1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_j4-k1_k3-l2", "glycoct": "RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n18s:n-acetyl\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:16o(3+2)17d\\n17:17d(5+1)18n", "species": [], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", 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"database": "CarbBank" }, { "url": "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=71334", "id": "71334", "database": "ChEBI" }, { "url": "xxx/yyy/GOG79", "id": "GOG79", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=6949", "id": "6949", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/693", "id": "693", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22970", "id": "22970", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=9992", "id": "9992", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G02741", "id": "G02741", "database": "KEGG Glycan" }, { "url": "https://www.rcsb.org/structure/1zag", "id": "1zag", "database": "PDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID70680320", "id": "CID70680320", 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Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4017", "id": "4017", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4017", "id": "4017", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/4017", "id": "4017", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" } ], "smiles_isomeric": "CC(=O)N[C@@H]1[C@H](C[C@@](O[C@H]1[C@@H]([C@@H](CO)O)O)(C(=O)O)OC[C@@H]2[C@@H]([C@@H]([C@H]([C@@H](O2)O[C@@H]3[C@H](O[C@H]([C@@H]([C@H]3O)NC(=O)C)O[C@H]4[C@H]([C@@H]([C@H](O[C@@H]4OC[C@@H]5[C@H]([C@@H]([C@@H]([C@@H](O5)O[C@@H]6[C@H](O[C@H]([C@@H]([C@H]6O)NC(=O)C)O[C@@H]7[C@H](O[C@H]([C@@H]([C@H]7O)NC(=O)C)O)CO)CO)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O)O)NC(=O)C)O)CO)O)O)CO)O)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+2014", "id": "2014", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+24896", "id": "24896", "database": "CarbBank" }, { "url": "xxx/yyy/GOG192", "id": "GOG192", "database": "Glyco" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=8013", "id": "8013", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1655", "id": "1655", "database": "GlyConnect" }, { "url": "https://glyconnect.expasy.org/browser/proteins/211", "id": "211", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12545", "id": "12545", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=24053", "id": "24053", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G11936", "id": "G11936", "database": "KEGG 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"database": "UniCarbKB" } ], "authors": "Saarinen J, Welgus HG, Flizar CA, Kalkkinen N, Helin J", "date": "1999", "pmid": "10092871" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O[C@H]8[C@H]([C@@H]([C@@H]([C@@H](O8)C)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O[C@H]1[C@H]([C@@H]([C@@H]([C@@H](O1)C)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N41", "parentid": "N2", "name": "N-glycan_a-L-Fucp_41" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N42", "parentid": "N5", "name": "N-glycan_a-L-Fucp_42" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 3, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-3[DGalpb1-4[LFucpa1-3]DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 12, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+31046", "id": "31046", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+32808", "id": "32808", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+3489", "id": "3489", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+35765", "id": "35765", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+36285", "id": "36285", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+37329", "id": "37329", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+38097", "id": "38097", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+41591", "id": "41591", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+44455", "id": "44455", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+49586", "id": "49586", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7762", "id": "7762", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8902", "id": "8902", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8911", "id": "8911", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9272", "id": "9272", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1403", "id": "1403", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1708", "id": "1708", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 669.36, "inchi_key": "", "publication": [ { "title": "Relevance of fucosylation and Lewis antigen expression in the bacterial gastroduodenal pathogen Helicobacter pylori.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/18279843", "journal": "Carbohydrate research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G01706RV", "id": "G01706RV", "database": "GlyTouCan" } ], "authors": "Moran AP", "date": "2008", "pmid": "18279843" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 1, "name": "Hexose" }, { "residue": "hexnac", "count": 1, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 3, "motifs": [], "inchi": "" }, "G47007PV": { "glytoucan_ac": "G47007PV", "mass": 2311.7, "iupac": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2887", "id": "2887", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5158", "id": "5158", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], 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"evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00750/annotated", "id": "P00750", "database": "UniCarbKB" } ], "protein_name": "Tissue-type plasminogen activator", "gene_name": "PLAT", "position": 219 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 102 }, { "uniprot_canonical_ac": "P06870-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P06870/annotated", "id": "P06870", "database": "UniCarbKB" } ], "protein_name": "Kallikrein-1", "gene_name": "KLK1", "position": 108 } ], "mass_pme": 2058.06, "inchi_key": "WLTOYPVSIQUKTR-WFONGNMLSA-N", "publication": [ { "title": "The glycosylation of Bowes melanoma tissue plasminogen activator: lectin mapping, reaction with anti-L2/HNK-1 antibodies and the presence of sulphated/glucuronic acid containing glycans.", "url": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=36026", "id": "36026", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 1308.7, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 6, "motifs": [ { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G10604KJ": { "glytoucan_ac": "G10604KJ", "mass": 894.33, "iupac": "beta-D-Galp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->6)]-?-D-GalpNAc(1->", "wurcs": "WURCS=2.0/4,5,4/[a2112h-1x_1-5_2*NCC/3=O][a2112h-1b_1-5][a2122h-1b_1-5_2*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2/a3-b1_a6-c1_c3-d1_c4-e1", "glycoct": "RES\\n1b:x-dgal-HEX-1:5\\n2s:n-acetyl\\n3b:b-dgal-HEX-1:5\\n4b:b-dglc-HEX-1:5\\n5s:n-acetyl\\n6b:a-lgal-HEX-1:5|6:d\\n7b:b-dgal-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(3+1)3d\\n3:1o(6+1)4d\\n4:4d(2+1)5n\\n5:4o(3+1)6d\\n6:4o(4+1)7d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G10604KJ", "id": "G10604KJ", "database": "GlyTouCan" } ], "taxid": 10090, "name": "Mus musculus" }, { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G10604KJ", "id": "G10604KJ", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=core-2_O-glycan&jump_to_nav=true", "name": "core 2" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=O-glycan&jump_to_nav=true", "name": "O-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbOlink_21139_D000", "id": "carbOlink_21139_D000", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=22152", "id": "22152", "database": "GlycomeDB" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G07279", "id": "G07279", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID71298227", "id": "CID71298227", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252291409", "id": "SID252291409", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1118.58, "inchi_key": "NYTSEJDAHNRALB-YNKPBPHMSA-N", "publication": [], "smiles_isomeric": 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"InChI=1S/C34H58N2O25/c1-8-17(42)21(46)24(49)32(54-8)61-29-16(36-10(3)41)31(58-13(6-39)27(29)59-33-25(50)22(47)18(43)11(4-37)56-33)53-7-14-20(45)28(15(30(52)55-14)35-9(2)40)60-34-26(51)23(48)19(44)12(5-38)57-34/h8,11-34,37-39,42-52H,4-7H2,1-3H3,(H,35,40)(H,36,41)/t8-,11+,12+,13+,14+,15+,16+,17+,18-,19-,20-,21+,22-,23-,24-,25+,26+,27+,28+,29+,30?,31+,32-,33-,34-/m0/s1" }, "G14389GM": { "glytoucan_ac": "G14389GM", "mass": 3390.2, "iupac": "alpha-D-NeupAc-(2->3),alpha-D-NeupAc-(2->3),alpha-D-NeupAc-(2->3),beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,17,16/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-1-2-3-1-4-1-4-3-1-4-1-4-5-6-6-6/a4-b1_a6-n1_b4-c1_c3-d1_c6-i1_d2-e1_d4-g1_e4-f1_g4-h1_i2-j1_i6-l1_j4-k1_l4-m1_o2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3|n3}_p2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3|n3}_q2-a3|b3|c3|d3|e3|f3|g3|h3|i3|j3|k3|l3|m3|n3}", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:b-dglc-HEX-1:5\\n18s:n-acetyl\\n19b:b-dgal-HEX-1:5\\n20b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:13o(6+1)17d\\n17:17d(2+1)18n\\n18:17o(4+1)19d\\n19:1o(6+1)20d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|14|16|17|19|20\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n21b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n22s:n-acetyl\\nLIN\\n20:21d(5+1)22n\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|14|16|17|19|20\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n23b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n24s:n-acetyl\\nLIN\\n21:23d(5+1)24n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10|12|13|14|16|17|19|20\\nSubtreeLinkageID1:o(3+2)d\\nRES\\n25b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d\\n26s:n-acetyl\\nLIN\\n22:25d(5+1)26n", 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"", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 17, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "" }, "G07703ST": { "glytoucan_ac": "G07703ST", "mass": 3681.3, "iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/7,18,17/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O][a1221m-1a_1-5]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6-7/a4-b1_a6-r1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k4-o1_l4-m1_m3-n2_o4-p1_p3-q2", "glycoct": 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"uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+5446", "id": "5446", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9822", "id": "9822", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15728", "id": "15728", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91860642", "id": "CID91860642", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252294489", "id": "SID252294489", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3595.82, "inchi_key": "NJMKMDQFZXKHKP-XPRZMJERSA-N", "publication": [], "smiles_isomeric": 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"detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N17", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_17" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE87", "parentid": "N1", "name": "N-glycan_b-D-GlcNAcp_E87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE93", "parentid": "NE87", "name": "N-glycan_b-D-Galp_E93" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE95", "parentid": "NE93", "name": "N-glycan_a-D-Neu5Acp_E95" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N13", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_13" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 3, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 14, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": "InChI=1S/C109H180N8O80/c1-27(129)110-35(12-118)60(144)82(42(143)16-122)186-95-57(115-32(6)134)71(155)85(47(21-127)179-95)189-100-80(164)90(69(153)50(182-100)24-173-102-92(76(160)64(148)43(17-123)177-102)192-96-58(116-33(7)135)72(156)84(46(20-126)180-96)188-99-79(163)75(159)66(150)52(184-99)26-175-108(105(168)169)10-37(138)54(112-29(3)131)88(195-108)62(146)40(141)14-120)191-103-93(193-97-59(117-34(8)136)73(157)86(48(22-128)181-97)190-101-81(165)91(68(152)44(18-124)176-101)197-109(106(170)171)11-38(139)55(113-30(4)132)89(196-109)63(147)41(142)15-121)77(161)67(151)49(185-103)23-172-94-56(114-31(5)133)70(154)83(45(19-125)178-94)187-98-78(162)74(158)65(149)51(183-98)25-174-107(104(166)167)9-36(137)53(111-28(2)130)87(194-107)61(145)39(140)13-119/h35-103,118-128,137-165H,9-26H2,1-8H3,(H,110,129)(H,111,130)(H,112,131)(H,113,132)(H,114,133)(H,115,134)(H,116,135)(H,117,136)(H,166,167)(H,168,169)(H,170,171)/t35-,36-,37-,38-,39+,40+,41+,42+,43+,44+,45+,46+,47+,48+,49+,50+,51+,52+,53+,54+,55+,56+,57+,58+,59+,60+,61+,62+,63+,64+,65-,66-,67+,68-,69+,70+,71+,72+,73+,74-,75-,76-,77-,78+,79+,80-,81+,82+,83+,84+,85+,86+,87+,88+,89+,90-,91-,92-,93-,94+,95-,96-,97-,98-,99-,100-,101-,102-,103+,107+,108+,109-/m0/s1" 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"subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+19329", "id": "19329", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7446", "id": "7446", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=3050", "id": "3050", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=4056", "id": "4056", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 3568.81, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": 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"https://pubchem.ncbi.nlm.nih.gov/compound/CID91857308", "id": "CID91857308", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252290485", "id": "SID252290485", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1200.56, "inchi_key": "VTXPSJWIQFDBEW-HIAKLWMBSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)O[C@@H]2[C@H]([C@H]([C@H](O[C@H]2O[C@H]([C@H](CO)NC(=O)C)[C@H]([C@@H](CO[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)COS(=O)(=O)O)O)O)NC(=O)C)O)O)CO)O)O[C@@H]4[C@@H]([C@H]([C@H]([C@H](O4)CO)O)O)O)O)O)O", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 2, "name": "Hexose" }, { "residue": "hexnac", "count": 2, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", 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"id": "1553", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "O60512-1", "gene": "B4GALT3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q9UM21-1", "gene": "MGAT4A", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q9UQ53-1", "gene": "MGAT4B", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9UBM8-1", "gene": "MGAT4C", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q812G0-1", "gene": "Mgat4a", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A" }, { "uniprot_canonical_ac": "Q812F8-1", "gene": "Mgat4b", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase B" }, { "uniprot_canonical_ac": "Q9D306-1", "gene": "Mgat4c", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "P97325-1", "gene": "St3gal3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q91Y74-1", "gene": "St3gal4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2356", "id": "2356", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/1553", "id": "1553", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 232 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 80 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 513 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 76 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 396 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 322 }, { "uniprot_canonical_ac": "P07911-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P07911/annotated", "id": "P07911", "database": "UniCarbKB" } ], "protein_name": "Uromodulin", "gene_name": "UMOD", "position": 275 } ], "mass_pme": 3999.01, "inchi_key": "", "publication": [ { "title": "Glycosylation sites and site-specific glycosylation in human Tamm-Horsfall glycoprotein.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/9884403", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1553", "id": "1553", "database": "UniCarbKB" } ], "authors": "van Rooijen JJ, Voskamp AF, Kamerling JP, Vliegenthart JF", "date": "1999", "pmid": "9884403" }, { "title": "Pregnancy-associated changes in oligomannose oligosaccharides of human and bovine uromodulin (Tamm-Horsfall glycoprotein).", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2136357", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1553", "id": "1553", "database": "UniCarbKB" } ], "authors": "Smagula RM, Van Halbeek H, Decker JM, Muchmore AV, Moody CE, Sherblom AP", "date": "1990", "pmid": "2136357" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N34", "parentid": "N8", "name": "N-glycan_a-D-Neup5Ac_34" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE136", "parentid": "N8", "name": "N-glycan_b-D-GlcNAcp_E136" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", 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"beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/5,16,15/[u2122h_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1b_1-5_2*NCC/3=O][a2112h-1b_1-5]/1-2-3-4-5-4-5-3-4-5-4-5-4-5-4-5/a4-b1_b3-c1_b6-h1_c2-d1_d4-e1_e3-f1_f4-g1_h2-i1_h6-m1_i4-j1_j3-k1_k4-l1_m4-n1_n3-o1_o4-p1", "glycoct": 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"subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+11565", "id": "11565", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=15553", "id": "15553", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 3598.82, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 9, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 16, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": "" }, "G39601JQ": { "glytoucan_ac": "G39601JQ", "mass": 2516.91, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/5,14,13/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-1-4-1-4-1-4-3-1-4-5/a4-b1_a6-n1_b4-c1_c3-d1_c6-k1_d2-e1_e4-f1_f3-g1_g4-h1_h3-i1_i4-j1_k2-l1_l4-m1", "glycoct": 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"N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": 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"publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O[C@H]9[C@@H]([C@H]([C@@H]([C@H](O9)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N62", "parentid": "N3", "name": "N-glycan_b-D-GlcpNAc_62" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N63", "parentid": "N62", "name": "N-glycan_b-D-Galp_63" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N76", "parentid": "N63", "name": "N-glycan_b-D-GlcpNAc_76" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N77", "parentid": "N76", "name": "N-glycan_b-D-Galp_77" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-", "number_monosaccharides": 14, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", 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"id": "4858", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=6886", "id": "6886", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 1583.84, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 3, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 7, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00056MO", "name": "Neo Lactosamine" }, { "id": "G00068MO", "name": "Blood group H" } ], "inchi": "" }, "G53485VW": { "glytoucan_ac": "G53485VW", "mass": 2661.95, "iupac": 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"gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": "B3GNT8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal 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"https://www.genome.jp/dbget-bin/www_bget?carbbank+13863", "id": "13863", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=1170", "id": "1170", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1436", "id": "1436", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=25388", "id": "25388", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91862120", "id": "CID91862120", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252296255", "id": "SID252296255", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 3584.84, "inchi_key": "VGUMHZIDPWOSSS-OFIRNTTNSA-N", "publication": [], "smiles_isomeric": 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"rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N62", "parentid": "N3", "name": "N-glycan_b-D-GlcpNAc_62" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N63", "parentid": "N62", "name": "N-glycan_b-D-Galp_63" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N7", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_7" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N8", "parentid": "N7", "name": "N-glycan_b-D-Galp_8" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 8, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=890", "id": "890", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=1127", "id": "1127", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=16007", "id": "16007", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2047.05, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 5, "name": "Hexose" }, { "residue": "hexnac", "count": 4, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 9, "motifs": [ { "id": "G00026MO", "name": 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.functionalglycomics.org/glycomics/CarbohydrateServlet?pageType=view&view=view&operationType=view&carbId=carbNlink_21321_P", "id": "carbNlink_21321_P", "database": "CFG" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=28906", "id": "28906", "database": "GlycomeDB" } ], "glycoprotein": [], "mass_pme": 2874.46, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { 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America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1187", "id": "1187", "database": "UniCarbKB" } ], "authors": "Pepys MB, Rademacher TW, Amatayakul-Chantler S, Williams P, Noble GE, Hutchinson WL, Hawkins PN, Nelson SR, Gallimore JR, Herbert J, et al.", "date": "1994", "pmid": "8202534" }, { "title": "Rapid and simple approach for the NMR resonance assignment of the carbohydrate chains of an intact glycoprotein. 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=complex_N-glycan&jump_to_nav=true", "name": "complex" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/1002", "id": "1002", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/1935", "id": "1935", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P00742-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P00742/annotated", "id": "P00742", "database": "UniCarbKB" } ], "protein_name": "Coagulation factor X", "gene_name": "F10", "position": 221 } ], "mass_pme": 3031.53, "inchi_key": "", "publication": [ { "title": "Identification of the oligosaccharide structures of human coagulation factor X activation peptide at each glycosylation site.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7620335", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1935", "id": "1935", "database": "UniCarbKB" } ], "authors": "Nakagawa H, Takahashi N, Fujikawa K, Kawamura Y, Iino M, Takeya H, Ogawa H, Suzuki K", "date": "1995", "pmid": "7620335" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00030MO", "name": "N-Glycan complex" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "" }, 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"http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "O60909-1", "gene": "B4GALT2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { 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"gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=37513", "id": "37513", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=27557", "id": "27557", "database": "Glycosciences.de" }, { "url": "https://www.rcsb.org/structure/3agv", "id": "3agv", "database": "PDB" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91856397", "id": "CID91856397", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252289409", "id": "SID252289409", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 1771.91, "inchi_key": "PCUMKVYHRFEJPV-FJHTUYMPSA-N", "publication": [], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O)O)O)NC(=O)C)O)O[C@@H]8[C@H]([C@H]([C@@H]([C@H](O8)CO)O)O)O)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE30", "parentid": "NA", "name": "N-glycan_b-L-Fucp_E30" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-2DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpb1-6]DGlcpNAca1-", "number_monosaccharides": 8, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C54H91N3O40/c1-12-26(66)34(74)38(78)50(85-12)83-11-22-44(31(71)23(47(82)86-22)55-13(2)63)93-48-24(56-14(3)64)32(72)43(20(9-62)90-48)95-53-41(81)45(96-52-40(80)36(76)28(68)17(6-59)88-52)30(70)21(92-53)10-84-54-46(37(77)29(69)18(7-60)89-54)97-49-25(57-15(4)65)33(73)42(19(8-61)91-49)94-51-39(79)35(75)27(67)16(5-58)87-51/h12,16-54,58-62,66-82H,5-11H2,1-4H3,(H,55,63)(H,56,64)(H,57,65)/t12-,16+,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27-,28+,29+,30+,31+,32+,33+,34+,35-,36-,37-,38-,39+,40-,41-,42+,43+,44+,45-,46-,47-,48-,49-,50-,51-,52+,53-,54-/m0/s1" }, "G60230HH": { "glytoucan_ac": "G60230HH", "mass": 1882.64, "iupac": "alpha-D-Manp-(1->2)-alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->3)[alpha-D-Manp-(1->2)-alpha-D-Manp-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-beta-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/3,11,10/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3-3-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-g1_d2-e1_e2-f1_g3-h1_g6-j1_h2-i1_j2-k1", "glycoct": "RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:a-dman-HEX-1:5\\n8b:a-dman-HEX-1:5\\n9b:a-dman-HEX-1:5\\n10b:a-dman-HEX-1:5\\n11b:a-dman-HEX-1:5\\n12b:a-dman-HEX-1:5\\n13b:a-dman-HEX-1:5\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:6o(2+1)7d\\n7:7o(2+1)8d\\n8:5o(6+1)9d\\n9:9o(3+1)10d\\n10:10o(2+1)11d\\n11:9o(6+1)12d\\n12:12o(2+1)13d", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1081", "id": "1081", "database": "UniCarbKB" } ], "taxid": 10116, "name": "Rattus norvegicus" }, { "evidence": [ { "url": "http://www.unicarbkb.org/structure/1081", "id": "1081", "database": "UniCarbKB" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=high-mannose_N-glycan&jump_to_nav=true", "name": "high mannose" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q2TAA5-1", "gene": "ALG11", "gene_link": "", "protein_name": "GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9BV10-1", "gene": "ALG12", "gene_link": "", "protein_name": "Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q92685-1", "gene": "ALG3", "gene_link": "", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9H6U8-1", "gene": "ALG9", "gene_link": "", "protein_name": "Alpha-1,2-mannosyltransferase ALG9" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q3TZM9-1", "gene": "Alg11", "gene_link": "", "protein_name": "GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase" }, { "uniprot_canonical_ac": "Q8VDB2-1", "gene": "Alg12", "gene_link": "", "protein_name": "Dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q9D081-1", "gene": "Alg14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9DBE8-1", "gene": "Alg2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q8K2A8-1", "gene": "Alg3", "gene_link": "", "protein_name": "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" }, { "uniprot_canonical_ac": "Q8VDI9-1", "gene": "Alg9", "gene_link": "", "protein_name": "Alpha-1,2-mannosyltransferase ALG9" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+13811", "id": "13811", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14024", "id": "14024", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+14083", "id": "14083", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+16085", "id": "16085", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1895", "id": "1895", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1896", "id": "1896", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+1897", "id": "1897", "database": "CarbBank" }, { "url": 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YT, Tanaka M, Seno T, Okubo Y, Fukuda Y, Imura H, Kannagi R", "date": "1990", "pmid": "2167157" }, { "title": "Northern hybridization analysis of VH gene expression in murine monoclonal antibodies directed to cancer-associated ganglioside antigens having various sialic acid linkages.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2111348", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G92175CL", "id": "G92175CL", "database": "GlyTouCan" } ], "authors": "Zenita K, Hirashima K, Shigeta K, Hiraiwa N, Takada A, Hashimoto K, Fujimoto E, Yago K, Kannagi R", "date": "1990", "pmid": "2111348" } ], "smiles_isomeric": 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"protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "Q9H3H5-1", "gene": "DPAGT1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q6P4F1-1", "gene": "FUT10", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 10" }, { "uniprot_canonical_ac": "Q495W5-1", "gene": "FUT11", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 11" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", 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"27276", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=219", "id": "219", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/3294", "id": "3294", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=22986", "id": "22986", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=272", "id": "272", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G01433", "id": "G01433", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91847218", "id": "CID91847218", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252278459", "id": "SID252278459", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/3191", "id": "3191", "database": "UniCarbKB" } ], "glycoprotein": 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}, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": "InChI=1S/C54H91N3O39/c1-12-26(66)33(73)37(77)50(83-12)82-11-22-42(31(71)23(47(81)85-22)55-14(3)63)91-48-24(56-15(4)64)32(72)41(20(9-61)89-48)92-53-40(80)45(30(70)19(8-60)87-53)95-54-46(36(76)29(69)18(7-59)88-54)96-49-25(57-16(5)65)44(94-51-38(78)34(74)27(67)13(2)84-51)43(21(10-62)90-49)93-52-39(79)35(75)28(68)17(6-58)86-52/h12-13,17-54,58-62,66-81H,6-11H2,1-5H3,(H,55,63)(H,56,64)(H,57,65)/t12-,13-,17+,18+,19+,20+,21+,22+,23+,24+,25+,26+,27+,28-,29+,30+,31+,32+,33+,34+,35-,36-,37-,38-,39+,40-,41+,42+,43+,44+,45-,46-,47+,48-,49-,50+,51-,52-,53-,54+/m0/s1" }, "G73161ZQ": { "glytoucan_ac": "G73161ZQ", "mass": 3537.25, "iupac": "alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,17,16/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d4-h1_e4-f1_f6-g2_h4-i1_i6-j2_k2-l1_k6-o1_l4-m1_m3-n2_o4-p1_p6-q2", "glycoct": 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}, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { 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"species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G47456CG", "id": "G47456CG", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [ { "uniprot_canonical_ac": "Q9BT22-1", "gene": "ALG1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "P15291-1", "gene": "B4GALT1", "gene_link": "", "protein_name": 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"protein_name": "Alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase C" }, { "uniprot_canonical_ac": "Q11203-1", "gene": "ST3GAL3", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q11206-1", "gene": "ST3GAL4", "gene_link": "", "protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q9Y274-1", "gene": "ST3GAL6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "P15907-1", "gene": "ST6GAL1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q96JF0-1", "gene": "ST6GAL2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" 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"protein_name": "CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 4" }, { "uniprot_canonical_ac": "Q8VIB3-1", "gene": "St3gal6", "gene_link": "", "protein_name": "Type 2 lactosamine alpha-2,3-sialyltransferase" }, { "uniprot_canonical_ac": "Q64685-1", "gene": "St6gal1", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 1" }, { "uniprot_canonical_ac": "Q76K27-1", "gene": "St6gal2", "gene_link": "", "protein_name": "Beta-galactoside alpha-2,6-sialyltransferase 2" } ], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+8094", "id": "8094", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=9795", "id": "9795", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=15701", "id": "15701", "database": "Glycosciences.de" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91853391", "id": "CID91853391", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252285802", "id": "SID252285802", "database": "PubChem" } ], "glycoprotein": [], "mass_pme": 4580.31, "inchi_key": "YBTMQEYGJZAWMS-FFFMVOEZSA-N", "publication": [], "smiles_isomeric": 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"name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N2", "parentid": "N1", "name": "N-glycan_b-D-GlcpNAc_2" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N3", "parentid": "N2", "name": "N-glycan_b-D-Galp_3" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N12", "parentid": "N3", "name": "N-glycan_a-D-Neup5Ac_12" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE87", "parentid": "N1", "name": "N-glycan_b-D-GlcNAcp_E87" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE93", "parentid": "NE87", "name": "N-glycan_b-D-Galp_E93" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NE95", "parentid": "NE93", "name": "N-glycan_a-D-Neu5Acp_E95" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N5", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_5" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N6", "parentid": "N5", "name": "N-glycan_b-D-Galp_6" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N16", "parentid": "N6", "name": "N-glycan_a-D-Neup5Ac_16" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N31", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_31" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N32", "parentid": "N31", "name": "N-glycan_b-D-Galp_32" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N46", "parentid": "N32", "name": "N-glycan_a-D-Neup5Ac_46" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 18, "motifs": [ { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00065MO", "name": "VIM" } ], "inchi": 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"database": "UniCarbKB" } ], "authors": "Takakura-Yamamoto R, Yamamoto S, Fukuda S, Kurimoto M", "date": "1996", "pmid": "8631363" }, { "title": "Structural studies on oncofetal carbohydrate antigens (Ca 19-9, Ca 50, and Ca 125) carried by O-linked sialyloligosaccharides on human amniotic mucins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3191509", "journal": "Carbohydrate research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/7624", "id": "7624", "database": "UniCarbKB" } ], "authors": "Hanisch FG, Uhlenbruck G, Peter-Katalinic J, Egge H", "date": "1988", "pmid": "3191509" } ], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 7, "name": "Hexose" }, { "residue": "hexnac", "count": 6, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 4, 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"detachedby": "", "id": "N24", "parentid": "N19", "name": "N-glycan_a-D-Manp_24" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 1, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-2DManpa1-3DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAca1-", "number_monosaccharides": 10, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00029MO", "name": "N-Glycan hybrid" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], "inchi": 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"http://www.glycome-db.org/database/showStructure.action?glycomeId=7615", "id": "7615", "database": "GlycomeDB" }, { "url": "https://glyconnect.expasy.org/browser/proteins/1148", "id": "1148", "database": "GlyConnect" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=12019", "id": "12019", "database": "Glycosciences.de" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=23857", "id": "23857", "database": "Glycosciences.de" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?gl:G00204", "id": "G00204", "database": "KEGG Glycan" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/compound/CID91861267", "id": "CID91861267", "database": "PubChem" }, { "url": "https://pubchem.ncbi.nlm.nih.gov/substance/SID252295231", "id": "SID252295231", "database": "PubChem" }, { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 110 }, { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 296 }, { "uniprot_canonical_ac": "P02771-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02771/annotated", "id": "P02771", "database": "UniCarbKB" } ], "protein_name": "Alpha-fetoprotein", "gene_name": "AFP", "position": 251 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 65 }, { "uniprot_canonical_ac": "P01588-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01588/annotated", "id": "P01588", "database": "UniCarbKB" } ], "protein_name": "Erythropoietin", "gene_name": "EPO", "position": 51 }, { "uniprot_canonical_ac": "P01730-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P01730/annotated", "id": "P01730", "database": "UniCarbKB" } ], "protein_name": "T-cell surface glycoprotein CD4", "gene_name": "CD4", "position": 325 } ], "mass_pme": 2582.31, "inchi_key": "NLTTXZCANFNSCT-BRKXYBFJSA-N", "publication": [ { "title": "Structural analysis of sulfated N-linked oligosaccharides in erythropoietin.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/11805077", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Kawasaki N, Haishima Y, Ohta M, Itoh S, Hyuga M, Hyuga S, Hayakawa T", "date": "2001", "pmid": "11805077" }, { "title": "Unusual N-glycosylation of a recombinant human erythropoietin expressed in a human lymphoblastoid cell line does not alter its biological properties.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10764840", "journal": "Glycobiology", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Cointe D, Beliard R, Jorieux S, Leroy Y, Glacet A, Verbert A, Bourel D, Chirat F", "date": "2000", "pmid": "10764840" }, { "title": "Carbohydrate structures of human alpha-fetoprotein of patients with hepatocellular carcinoma: presence of fucosylated and non-fucosylated triantennary glycans.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7679920", "journal": "British journal of cancer", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Aoyagi Y, Suzuki Y, Igarashi K, Saitoh A, Oguro M, Yokota T, Mori S, Suda T, Isemura M, Asakura H", "date": "1993", "pmid": "7679920" }, { "title": "Sugar chains of human cord serum alpha-fetoprotein: characteristics of N-linked sugar chains of glycoproteins produced in human liver and hepatocellular carcinomas.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7686446", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Yamashita K, Taketa K, Nishi S, Fukushima K, Ohkura T", "date": "1993", "pmid": "7686446" }, { "title": "Structures of mucin-type sugar chains on human erythropoietins purified from urine and the culture medium of recombinant Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8460945", "journal": "Archives of biochemistry and biophysics", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Inoue N, Takeuchi M, Asano K, Shimizu R, Takasaki S, Kobata A", "date": "1993", "pmid": "8460945" }, { "title": "Structures of sialylated oligosaccharides of human erythropoietin expressed in recombinant BHK-21 cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/8477709", "journal": "European journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Nimtz M, Martin W, Wray V, Kloppel KD, Augustin J, Conradt HS", "date": "1993", "pmid": "8477709" }, { "title": "Unique structure of glycopeptide from alpha-fetoprotein produced in human hepatoma cell line, as determined by 1H-nuclear magnetic resonance spectroscopy.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/1694115", "journal": "Clinical chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Terrana B, Tecce MF, Manetti R, Ceccarini C, Lamba D, Segre AL", "date": "1990", "pmid": "1694115" }, { "title": "Relationship between sugar chain structure and biological activity of recombinant human erythropoietin produced in Chinese hamster ovary cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2813359", "journal": "Proceedings of the National Academy of Sciences of the United States of America", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Takeuchi M, Inoue N, Strickland TW, Kubota M, Wada M, Shimizu R, Hoshi S, Kozutsumi H, Takasaki S, Kobata A", "date": "1989", "pmid": "2813359" }, { "title": "Protein and carbohydrate structural analysis of a recombinant soluble CD4 receptor by mass spectrometry.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2592374", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Carr SA, Hemling ME, Folena-Wasserman G, Sweet RW, Anumula K, Barr JR, Huddleston MJ, Taylor P", "date": "1989", "pmid": "2592374" }, { "title": "Recombinant human erythropoietin produced by Namalwa cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2550193", "journal": "DNA (Mary Ann Liebert, Inc.)", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Yanagi H, Yoshima T, Ogawa I, Okamoto M", "date": "1989", "pmid": "2550193" }, { "title": "Comparative structural study of N-linked oligosaccharides of urinary and recombinant erythropoietins.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/3179269", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Tsuda E, Goto M, Murakami A, Akai K, Ueda M, Kawanishi G, Takahashi N, Sasaki R, Chiba H, Ishihara H, et al.", "date": "1988", "pmid": "3179269" }, { "title": "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/6192908", "journal": "Cancer research", "evidence": [ { "url": "http://www.unicarbkb.org/structure/1973", "id": "1973", "database": "UniCarbKB" } ], "authors": "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A", "date": "1983", "pmid": "6192908" } ], "smiles_isomeric": "C[C@H]1[C@H]([C@H]([C@@H]([C@@H](O1)OC[C@@H]2[C@H]([C@@H]([C@H]([C@@H](O2)O)NC(=O)C)O)O[C@H]3[C@@H]([C@H]([C@@H]([C@H](O3)CO)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)CO[C@@H]5[C@H]([C@H]([C@@H]([C@H](O5)CO)O)O)O[C@H]6[C@@H]([C@H]([C@@H]([C@H](O6)CO)O[C@H]7[C@@H]([C@H]([C@H]([C@H](O7)CO)O)O[C@@]8(C[C@@H]([C@H]([C@@H](O8)[C@@H]([C@@H](CO)O)O)NC(=O)C)O)C(=O)O)O)O)NC(=O)C)O)O[C@@H]9[C@H]([C@H]([C@@H]([C@H](O9)CO)O)O)O[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)O)NC(=O)C)O)O)NC(=O)C)O)O)O", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", 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"RES\\n1b:o-dglc-HEX-0:0|1:aldi\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:b-dgal-HEX-1:5\\n10b:b-dglc-HEX-1:5\\n11s:n-acetyl\\n12b:b-dgal-HEX-1:5\\n13b:a-dman-HEX-1:5\\n14b:b-dglc-HEX-1:5\\n15s:n-acetyl\\n16b:b-dgal-HEX-1:5\\n17b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3|6+1)6d\\n6:6o(2+1)7d\\n7:7d(2+1)8n\\n8:7o(4+1)9d\\n9:6o(4+1)10d\\n10:10d(2+1)11n\\n11:10o(4+1)12d\\n12:5o(3|6+1)13d\\n13:13o(2+1)14d\\n14:14d(2+1)15n\\n15:14o(4+1)16d\\n16:1o(6+1)17d", "species": [ { "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G19863KG", "id": "G19863KG", "database": "GlyTouCan" } ], "taxid": 9606, "name": "Homo sapiens" } ], "classification": [ { "subtype": { "url": "", "name": "Other" }, "type": { "url": "", "name": "Other" } } ], "enzyme": [], "crossref": [ { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7229", "id": "7229", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+7230", "id": "7230", "database": "CarbBank" }, { "url": "https://www.genome.jp/dbget-bin/www_bget?carbbank+9928", "id": "9928", "database": "CarbBank" }, { "url": "http://www.glycome-db.org/database/showStructure.action?glycomeId=35865", "id": "35865", "database": "GlycomeDB" }, { "url": "http://www.glycosciences.de/database/start.php?action=explore_linucsid&linucsid=7207", "id": "7207", "database": "Glycosciences.de" } ], "glycoprotein": [], "mass_pme": 2686.39, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 1, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic 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"RES\\n1b:b-dglc-HEX-1:5\\n2s:n-acetyl\\n3b:b-dglc-HEX-1:5\\n4s:n-acetyl\\n5b:b-dman-HEX-1:5\\n6b:a-dman-HEX-1:5\\n7b:b-dglc-HEX-1:5\\n8s:n-acetyl\\n9b:a-dman-HEX-1:5\\n10b:a-lgal-HEX-1:5|6:d\\nLIN\\n1:1d(2+1)2n\\n2:1o(4+1)3d\\n3:3d(2+1)4n\\n4:3o(4+1)5d\\n5:5o(3+1)6d\\n6:5o(4+1)7d\\n7:7d(2+1)8n\\n8:5o(6+1)9d\\n9:1o(6+1)10d\\nUND\\nUND1:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n11b:x-dglc-HEX-1:5\\n12s:n-acetyl\\n13b:a-lgal-HEX-1:5|6:d\\n14b:b-dgal-HEX-1:5\\nLIN\\n10:11d(2+1)12n\\n11:11o(3+1)13d\\n12:11o(4+1)14d\\nUND2:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n15b:x-dglc-HEX-1:5\\n16b:x-dgal-HEX-1:5\\n17s:n-acetyl\\nLIN\\n13:15o(-1+1)16d\\n14:15d(2+1)17n\\nUND3:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n18b:x-dglc-HEX-1:5\\n19b:x-dgal-HEX-1:5\\n20s:n-acetyl\\nLIN\\n15:18o(-1+1)19d\\n16:18d(2+1)20n\\nUND4:100.0:100.0\\nParentIDs:1|3|5|6|7|9|10\\nSubtreeLinkageID1:o(-1+1)d\\nRES\\n21b:x-dglc-HEX-1:5\\n22s:n-acetyl\\nLIN\\n17:21d(2+1)22n", "species": [ { "evidence": [ { "url": "http://www.unicarbkb.org/structure/7806", "id": "7806", "database": "UniCarbKB" } ], "taxid": 10090, "name": "Mus musculus" } ], "classification": [ { "subtype": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=Other&jump_to_nav=true", "name": "Other" }, "type": { "url": "http://bioportal.bioontology.org/ontologies/GLYCO/?p=classes&conceptid=N-glycan&jump_to_nav=true", "name": "N-glycan" } } ], "enzyme": [], "crossref": [ { "url": "http://www.unicarbkb.org/structure/7806", "id": "7806", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 196 }, { "uniprot_canonical_ac": "P04925-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P04925/annotated", "id": "P04925", "database": "UniCarbKB" } ], "protein_name": "Major prion protein", "gene_name": "Prnp", "position": 180 } ], "mass_pme": 3334.7, "inchi_key": "", "publication": [], "smiles_isomeric": "", "residues": [], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 7, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 15, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" } ], "inchi": "" }, "G18286BM": { "glytoucan_ac": "G18286BM", "mass": 2299.86, "iupac": "beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->3)[beta-D-Galp-(1->4)[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc-(1->2)-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)[alpha-L-Fucp-(1->6)]-D-GlcNAc(?->", "wurcs": "WURCS=2.0/6,13,12/[h2122h_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-2-3-4-2-5-2-5-4-2-6-5-6/a4-b1_a6-m1_b4-c1_c3-d1_c6-i1_d2-e1_e4-f1_f3-g1_g4-h1_i2-j1_j3-k1_j4-l1", "glycoct": 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"protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9NP73-1", "gene": "ALG13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": "Q96F25-1", "gene": "ALG14", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine transferase subunit ALG14 homolog" }, { "uniprot_canonical_ac": "Q9H553-1", "gene": "ALG2", "gene_link": "", "protein_name": "Alpha-1,3/1,6-mannosyltransferase ALG2" }, { "uniprot_canonical_ac": "Q9NY97-1", "gene": "B3GNT2", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2" }, { "uniprot_canonical_ac": "Q9C0J1-1", "gene": "B3GNT4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q7Z7M8-1", "gene": "B3GNT8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 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"gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 6" }, { "uniprot_canonical_ac": "Q9BYC5-1", "gene": "FUT8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "Q9Y231-1", "gene": "FUT9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "P26572-1", "gene": "MGAT1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q10469-1", "gene": "MGAT2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921Q3-1", "gene": "Alg1", "gene_link": "", "protein_name": "Chitobiosyldiphosphodolichol beta-mannosyltransferase" }, { "uniprot_canonical_ac": "Q9D8C3-1", "gene": "Alg13", "gene_link": "", "protein_name": "Putative bifunctional UDP-N-acetylglucosamine transferase and deubiquitinase ALG13" }, { "uniprot_canonical_ac": 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{ "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N15", "parentid": "NA", "name": "N-glycan_a-L-Fucp_15" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 2, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 6, "name": "Hexose" }, { "residue": "hexnac", "count": 5, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "", "number_monosaccharides": 13, "motifs": [ { "id": "G00051MO", "name": "Lewis X" }, { "id": "G00055MO", "name": "Lactosamine motif" }, { "id": "G00058MO", "name": "Polylactosamine" } ], "inchi": 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"iupac": "alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->3)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->6)]-alpha-D-Manp-(1->3)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->2)[alpha-D-NeupAc-(2->6)-beta-D-Galp-(1->4)-beta-D-GlcpNAc-(1->4)]-alpha-D-Manp-(1->6)]-beta-D-Manp-(1->4)-beta-D-GlcpNAc-(1->4)-?-D-GlcpNAc(1->", "wurcs": "WURCS=2.0/6,17,16/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-6-2-5-6-4-2-5-6-2-5-6/a4-b1_b4-c1_c3-d1_c6-k1_d2-e1_d6-h1_e4-f1_f3-g2_h4-i1_i3-j2_k2-l1_k4-o1_l4-m1_m6-n2_o4-p1_p6-q2", "glycoct": 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[], "mass_pme": 1162.41, "inchi_key": "", "publication": [ { "title": "Core 2 branching beta1,6-N-acetylglucosaminyltransferase and high endothelial venule-restricted sulfotransferase collaboratively control lymphocyte homing.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/14593101", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00659GQ", "id": "G00659GQ", "database": "GlyTouCan" } ], "authors": "Hiraoka N, Kawashima H, Petryniak B, Nakayama J, Mitoma J, Marth JD, Lowe JB, Fukuda M", "date": "2004", "pmid": "14593101" }, { "title": "N-acetylglucosamine 6-O-sulfotransferase-1 regulates expression of L-selectin ligands and lymphocyte homing.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/15175329", "journal": "The Journal of biological chemistry", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00659GQ", "id": "G00659GQ", "database": "GlyTouCan" } ], "authors": "Uchimura K, Kadomatsu K, El-Fasakhany FM, 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"Expression of sialyl 6-sulfo Lewis X is inversely correlated with conventional sialyl Lewis X expression in human colorectal cancer.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10728707", "journal": "Cancer research", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00659GQ", "id": "G00659GQ", "database": "GlyTouCan" } ], "authors": "Izawa M, Kumamoto K, Mitsuoka C, Kanamori C, Kanamori A, Ohmori K, Ishida H, Nakamura S, Kurata-Miura K, Sasaki K, Nishi T, Kannagi R", "date": "2000", "pmid": "10728707" }, { "title": "L-selectin ligands expressed by human leukocytes are HECA-452 antibody-defined carbohydrate epitopes preferentially displayed by P-selectin glycoprotein ligand-1.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/10528213", "journal": "Journal of immunology (Baltimore, Md. : 1950)", "evidence": [ { "url": "https://glytoucan.org/Structures/Glycans/G00659GQ", "id": "G00659GQ", "database": "GlyTouCan" } ], "authors": "Tu L, Murphy PG, Li X, Tedder TF", "date": 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"Q1RLK6-1", "gene": "B3gnt4", "gene_link": "", "protein_name": "N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 4" }, { "uniprot_canonical_ac": "Q8R3I9-1", "gene": "B3gnt8", "gene_link": "", "protein_name": "UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 8" }, { "uniprot_canonical_ac": "P15535-1", "gene": "B4galt1", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 1" }, { "uniprot_canonical_ac": "Q9Z2Y2-1", "gene": "B4galt2", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 2" }, { "uniprot_canonical_ac": "Q91YY2-1", "gene": "B4galt3", "gene_link": "", "protein_name": "Beta-1,4-galactosyltransferase 3" }, { "uniprot_canonical_ac": "P42867-1", "gene": "Dpagt1", "gene_link": "", "protein_name": "UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase" }, { "uniprot_canonical_ac": "Q11127-1", "gene": "Fut4", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 4" }, { "uniprot_canonical_ac": "Q9WTS2-1", "gene": "Fut8", "gene_link": "", "protein_name": "Alpha-(1,6)-fucosyltransferase" }, { "uniprot_canonical_ac": "O88819-1", "gene": "Fut9", "gene_link": "", "protein_name": "Alpha-(1,3)-fucosyltransferase 9" }, { "uniprot_canonical_ac": "Q8BML3-1", "gene": "Glt28d2", "gene_link": "", "protein_name": "" }, { "uniprot_canonical_ac": "P27808-1", "gene": "Mgat1", "gene_link": "", "protein_name": "Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" }, { "uniprot_canonical_ac": "Q921V5-1", "gene": "Mgat2", "gene_link": "", "protein_name": "Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase" } ], "crossref": [ { "url": "https://glyconnect.expasy.org/browser/proteins/2283", "id": "2283", "database": "GlyConnect" }, { "url": "http://www.unicarbkb.org/structure/5348", "id": "5348", "database": "UniCarbKB" } ], "glycoprotein": [ { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 497 }, { "uniprot_canonical_ac": "P02788-1", "evidence": [ { "url": "http://unicarbkb.org/proteinsummary/P02788/annotated", "id": "P02788", "database": "UniCarbKB" } ], "protein_name": "Lactotransferrin", "gene_name": "LTF", "position": 156 } ], "mass_pme": 3205.62, "inchi_key": "", "publication": [ { "title": "N-glycosylation potential of maize: the human lactoferrin used as a model.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/12151713", "journal": "Glycoconjugate journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5348", "id": "5348", "database": "UniCarbKB" } ], "authors": "Samyn-Petit B, Gruber V, Flahaut C, Wajda-Dubos JP, Farrer S, Pons A, Desmaizieres G, Slomianny MC, Theisen M, Delannoy P", "date": "2001", "pmid": "12151713" }, { "title": "Structural determination of two N-linked glycans isolated from recombinant human lactoferrin expressed in BHK cells.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7774715", "journal": "FEBS letters", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5348", "id": "5348", "database": "UniCarbKB" } ], "authors": "Legrand D, Salmon V, Coddeville B, Benaissa M, Plancke Y, Spik G", "date": "1995", "pmid": "7774715" }, { "title": "Primary structure of glycans isolated from human leucocyte lactotransferrin. Absence of fucose residues questions the proposed mechanism of hyposideraemia.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2390069", "journal": "The Biochemical journal", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5348", "id": "5348", "database": "UniCarbKB" } ], "authors": "Derisbourg P, Wieruszeski JM, Montreuil J, Spik G", "date": "1990", "pmid": "2390069" }, { "title": "Structural study of the sugar chains of human lactoferrin: finding of four novel complex-type asparagine-linked sugar chains.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/7068558", "journal": "Journal of biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/5348", "id": "5348", "database": "UniCarbKB" } ], "authors": "Matsumoto A, Yoshima H, Takasaki S, Kobata A", "date": "1982", "pmid": "7068558" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": 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"date": "1993", "pmid": "8344278" }, { "title": "Characteristics of asparagine-linked sugar chains of sphingolipid activator protein 1 purified from normal human liver and GM1 gangliosidosis (type 1) liver.", "url": "https://www.ncbi.nlm.nih.gov/pubmed/2110822", "journal": "Biochemistry", "evidence": [ { "url": "http://www.unicarbkb.org/structure/3399", "id": "3399", "database": "UniCarbKB" } ], "authors": "Yamashita K, Inui K, Totani K, Kochibe N, Furukawa M, Okada S", "date": "1990", "pmid": "2110822" } ], "smiles_isomeric": "", "residues": [ { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NA", "parentid": "no_id", "name": "N-glycan_core_b-D-GlcpNAc_A" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NB", "parentid": "NA", "name": "N-glycan_core_b-D-GlcpNAc_B" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "NC", "parentid": "NB", "name": "N-glycan_core_b-D-Manp" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N1", "parentid": "NC", "name": "N-glycan_a-D-Manp_1" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N4", "parentid": "NC", "name": "N-glycan_a-D-Manp_4" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N9", "parentid": "N4", "name": "N-glycan_b-D-GlcpNAc_9" }, { "attachedby": "rxn.Q9BT22-1", "detachedby": "", "id": "N10", "parentid": "N9", "name": "N-glycan_b-D-Galp_10" } ], "composition": [ { "residue": "neugc", "count": 0, "name": "N-Glycolylneuraminic Acid" }, { "residue": "dhex", "count": 0, "name": "Deoxyhexose" }, { "residue": "other", "count": 0, "name": "Other" }, { "residue": "hex", "count": 4, "name": "Hexose" }, { "residue": "hexnac", "count": 3, "name": "N-Acetylhexosamine" }, { "residue": "neuac", "count": 0, "name": "N-Acetylneuraminic Acid" } ], "glycam": "DGalpb1-4DGlcpNAcb1-6DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-", "number_monosaccharides": 7, "motifs": [ { "id": "G00026MO", "name": "N-Glycan core basic" }, { "id": "G00055MO", "name": "Lactosamine motif" } ], 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