{
    "bcoid": "GLY_000255",
    "title": "Rat UniProtKB Protein Isoform sequences (All)",
    "description": "The UniProtKB Protein Isoform sequences (All) dataset contains rat [taxid:10116] protein fasta sequences ...",
    "filename": "rat_protein_allsequences.fasta",
    "filetype": "fasta",
    "categories": {
        "species": "Rattus Norvegicus",
        "molecule": "Protein",
        "tags": "All Protein Sequences",
        "file_type": "fasta",
        "status": "Reviewed",
        "scope": "internal"
    },
    "iconfilename": "fasta_icon_all.png",
    "sampledata": {
        "type": "html",
        "data": "<pre>\n>tr|D3ZB44-1|D3ZB44-1|D3ZB44_RAT  OS=Rattus norvegicus GN=Zfp324\nMPRSPARRAPPPLQIPMAVTWPLTDPARGLMAFEDVAVYFSQEEWMFLNAAQRALYRHVM\nLENFALVDSIGPSVSRPRVIIQLQRGEEPWVPNRTIAGPGRGTHRRSSLGSNYSARDRHV\nSGASPGATCDRPVRISTSLLPPAGAYPDAKILEGHQSACPSLQKKPTGVSVIYWEQLLLG\nSSSSEATVSLRLTSPVGVPENGSSRVKAFSDLLAPGKQLRVAEQQKPEMQLNPGRTFQSI\nPDLHEAEEGHGISGACHESQGDPSVPEAPIWDELGEALQAGPGLFSGDKPFECRACNKVF\nVKSSDLLKHLRTHTGERPYECAQCGKAFSQTSHLTQHQRIHSGETPYVCMVCSKAFRHSS\nSLVRHQRIHTVEKTFHCNECGKAFSHGSNLSQHRKIHAGGRPYACAQCGRRFCRNSHLIQ\nHERTHTGEKPYACSLCGAAFSQGSSLFKHQRVHTGEKPFSCPQCGRAFSHSSNLTQHQLL\nHTGERPFRCGDCGKAFAKGAVLLSHRRIHTGEKPFVCTQCGRAFRERPALFHHQRIHTGE\nKALRRPRGNMHSQIGSLGVSLDGTHPKATLDPPAVPNIAEA\n\n\n>tr|Q5BK97-1|Q64627-1|NEUR2_RAT Sialidase-2 OS=Rattus norvegicus GN=Neu2\nMETCPVLQKETLFHTEVYAYRIPALLYLKKQKTLLAFAEKRASRTDEHAELIVLRRGSYN\nGATNHVKWQPEEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEQHQLQTRVN\nVTRLCRVTSTDYGMNWSPVQDLTETTIGSTHQDWATFAVGPGHCLQLRNRAGSLLVPAYA\nYQKLHPVHKPTPFAFCFISLDHGHTWELGNFVSENSLECQVAEVGTGAHRVVYLNARSFI\nGARVQAQSPNDGLDFQDNQVVSKLVEPPHGCHGSVVAFHSPTSKPDALDMWLLYTHPTDS\nRNRTNLGVYLNQTPLDPTAWSEPTLLATGTCAYSDLQNMGRGPDGSPQFGCLYESGNYDE\nIIFLMFTLKQAFPTVHGAQ\n\n\n>sp|Q64627-1|Q64627-1|NEUR2_RAT Sialidase-2 OS=Rattus norvegicus GN=Neu2\nMETCPVLQKETLFHTEVYAYRIPALLYLKKQKTLLAFAEKRASRTDEHAELIVLRRGSYN\nGATNHVKWQPEEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEQHQLQTRVN\nVTRLCRVTSTDYGMNWSPVQDLTETTIGSTHQDWATFAVGPGHCLQLRNRAGSLLVPAYA\nYRKLHPVHKPTPFAFCFISLDHGHTWELGNFVSENSLECQVAEVGTGAHRVVYLNARSFI\nGARVQAQSPNDGLDFQDNQVVSKLVEPPHGCHGSVVAFHSPTSKPDCLRHVAAYTHPTDS\nRNRTNLGVYLNQTPLDPTAWSEPTLLATGTCAYSDLQIWGLGPDGSPQFGCLYESGNYDE\nIIFLMFTLKQAFPTVHGAQ\n\n\n>tr|D3ZB48-1|D3ZB48-1|D3ZB48_RAT  OS=Rattus norvegicus GN=Hook1\nMEDPQPLPQPELPLCDSLIIWLQTFKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWL\nSRIKDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITESSDPVELGRL\nLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKEIVSSPASDAVGELEQQL\nKRALEELQEALAEKEELKQRCQELDMQVTALQDEKNSLVSENEMMNEKLDQLDGSFDDPN\nTMVAKKYFHVQLQLEQLQEENYRLEAAKDDYRVHCEELEKQLIEFQHRNDELTSLAEETR\nALKDEIDVLRATSDKANKLESTVEVYRQKLQDLNDLRKQVKSLQETNMMYMHNTVSLEEE\nLKKANAARAQLETYKRQVQDLHTKLSSESKRADTLAFEMKRLEEKHETLLKEKERLIEQR\nDTLKETNEELRCSKAQQDHLNQADSSATKSYENLAAEIMPVEYREVFIRLQHENKMLRLQ\nQEGTENERIEQLQEQLEQKHRKMNELETEQRLSKERIGELQQQIEDLQKSLQEQGSKSEG\nESSSKLKQKLEAHMEKLTEVHEELQKKQELIEDLQPDISQNAQKISELEAALQKKDEDMK\nAMEERYKMYLEKARNVIKTLDPKLNPASAEIMLLRKQLAEKDRRIEILESECKVAKFRDY\nEEKLIVSAWYNKSLAFQKLGMESRLVSGASACKDSVAAAPARSFLAQQRHITSTRRNLSV\nKVPAAASD\n\n\n>tr|A0A0G2JVG5-1|A0A0G2JVG5-1|A0A0G2JVG5_RAT  OS=Rattus norvegicus GN=LOC102552378\nMEPRGQNYPNWDTRGRRATIFPQREGVKVAVPSTFLAQYEDTAFLTTRYKTFLTRKRALC\nDFRVRWPELVSTEQEPQKEDTSFLGLPSLDRKPTDTSSCSSASISLKNQESSHGDLEDPK\nEFTGCLAEGFPESPHVTILNSYLKPESMTRLEKKVRKRTVVVMNQLEHEKESAKFRRAVL\nLRDTRELQDEKAYEEAGNKPFLEYLKEKNQETQEKYDSLWKDYIQQCQEIKDRRQELVST\nFTSQREDLQKELMRNKKLDASLKKKLQALEPIAHIKESQDREIKALELEHASIVANIPFM\nDREAHFQFLRERAALEKQVEGMNLLESGEDITRELKKKTKAWDTAAKQAHEDFCQDVNAR\nNRQLRTQLQQLDQEFCKLEIRKEKLEWQKQQWKEQQWYLEALTRGRERLQRREHHRQERE\nHRRQEREHRRQKWEHHRRARPKANPKWLPCPRKLTGAEAG\n\n\n>tr|A0A0G2JVG6-1|A0A0G2JVG6-1|A0A0G2JVG6_RAT  OS=Rattus norvegicus GN=\nMAVKEETDRLSPDLESEYETQELFPDNHIYTINLFKQTIRHISETFELKGSSFSNGHSYS\nTFRGLQDCQEGDVDQKNTNKEKVPTYTCHTLTHSLEKLYECKEYGKYFGCSSTLTQYQSI\nHSVEKPYECKDCGKAFKIQQHLTRHLNAHSGERPFECSECGKSFKHDSSLVQHKFIHAGV\nKPFECNECGKAFNRRSNFMRHQKVHSDKKPFQYKEYGNVLNVLAELITQPRNIHTGKKSF\nECKQCGKIFNSGSYLMQHQNIHTSEKAFGCNVCGKAFRLQAYLSEHQKTHTDEKPFQCKL\nCGSVFRRKYHLTEHQRIHTDVKLYQCEECGKFFRRRSNFIEHQSIHSNVKPYKCKLCGLD\nFRLQSLLNQHQRIHTDEKPYQCKECGKFFRRRSNYTEHQSIHTNVKPYKCNLCGTAFRLQ\nSLLTQHQRIHTGEKPYECKECGKFFRRSSNFIEHRSIHSNVKPYKCKLCGSDFRLQSLLN\nQHQRIHTGEKPYQCKECGKFFRRRSNYTEHQSIHSNVKPFTCKLCGLAFRLQSLLTQHQR\nIHTGEKPYQCKECGKFFRRSSNFTEHQSVHTGEKPFDCKKCGKAFRLNIHLIRHQRFHNG\nENAKSVERPFVL\n\n\n>tr|A0A0G2K3H3-1|P30938-1|SSR5_RAT Somatostatin receptor type 5 OS=Rattus norvegicus GN=Sstr5\nMEPLSLASTPSWNASAASSGNHNWSLVGSASPMGARAVLVPVLYLLVCTVGLSGNTLVIY\nVVLRHAKMKTRVGGLRPHCPHAAARPMGSCRPAGFECPCNTLGVLQASTVLSSGI\n\n\n>tr|G3V8G3-1|P30938-1|SSR5_RAT Somatostatin receptor type 5 OS=Rattus norvegicus GN=Sstr5\nMEPLSLASTPSWNASAASSGNHNWSLVGSASPMGARAVLVPVLYLLVCTVGLSGNTLVIY\nVVLRHAKMKTVTNVYILNLAVADVLFMLGLPFLATQNAVSYWPFGSFLCRLVMTLDGINQ\nFTSIFCLMVMSVDRYLAVVHPLRSARWRRPRVAKMASAAVWVFSLLMSLPLLVFADVQEG\nWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLCYLLIVVKVKAAGMRVGSSRRRR\nSERKVTRMVVVVVLVFVGCWLPFFIVNIVNLAFTLPEEPTSAGLYFFVVVLSYANSCANP\nLLYGFLSDNFRQSFRKVLCLRRGYGMEDADAIEPRPDKSGRPQATLPTRSCEANGLMQTS\nRI\n\n\n>sp|P30938-1|P30938-1|SSR5_RAT Somatostatin receptor type 5 OS=Rattus norvegicus GN=Sstr5\nMEPLSLASTPSWNASAASSGNHNWSLVGSASPMGARAVLVPVLYLLVCTVGLSGNTLVIY\nVVLRHAKMKTVTNVYILNLAVADVLFMLGLPFLATQNAVVSYWPFGSFLCRLVMTLDGIN\nQFTSIFCLMVMSVDRYLAVVHPLRSARWRRPRVAKMASAAVWVFSLLMSLPLLVFADVQE\nGWGTCNLSWPEPVGLWGAAFITYTSVLGFFGPLLVICLCYLLIVVKVKAAGMRVGSSRRR\nRSEPKVTRMVVVVVLVFVGCWLPFFIVNIVNLAFTLPEEPTSAGLYFFVVVLSYANSCAN\nPLLYGFLSDNFRQSFRKVLCLRRGYGMEDADAIEPRPDKSGRPQATLPTRSCEANGLMQT\nSRI\n\n\n</pre>"
    },
    "readme": "Name\n   - Rat UniProtKB Protein Isoform sequences (All)\n\nVersion\n   - 1.4.5\n\nCreated on\n  - 2019-09-06T14:06:38.982193\n\nModified on\n   - \n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The UniProtKB Protein Isoform sequences (All) dataset contains rat [taxid:10116] protein fasta sequences for the rat isoform accessions from the UniProtKB database,. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n   - The Rat Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for rat [taxid:10116] proteins. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein isoform sequences\n   - fasta\n   - UniProtKB\n   - protein alternative name\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB fasta sequence for all rat isoform accessions data from the triplestore containing triples from nt file and extracts it into a dataset in a fasta format\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-10116-rattus-norvegicus-2019-05.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-10116-rattus-norvegicus-2019-05.nt\n   Output Subdomain\n      Name: rat_protein_allsequences.fasta\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_allsequences.fasta\n      Name: rat_protein_allsequences.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_protein_allsequences.stat.csv\n\nFields\n      Name: \"sequence\"\n     Description: \"Amino acid sequence\"\n      Unique Values: \"31538\"",
    "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/rat_protein_allsequences.fasta"
}