{ "bcoid": "GLY_000199", "title": "Glycan Sequences GLYCAM IUPAC (Mouse GlyTouCan Masterlist)", "description": "The dataset provides the glycan sequences in Glycam IUPAC format for the associated glycans (GlyTouCan ...", "filename": "mouse_glycan_sequences_glycam_iupac.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Glycan", "tags": "GLYCAM IUPAC sequence format", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00031MO...", "DGalpb1-3DGa..." ], [ "G00033MO...", "DGalpb1-3[DG..." ] ], "headers": [ "glytoucan_ac...", "sequence_gly..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "sequence_glycam_iupac" } ], [ "G00031MO", "DGalpb1-3DGalpNAca1-" ], [ "G00033MO", "DGalpb1-3[DGlcpNAcb1-6]DGalpNAca1-" ], [ "G00041MO", "DGlcpNAcb1-6DGalpNAca1-" ], [ "G00048MO", "LFucpa1-2DGalpb1-3[LFucpa1-4]DGlcpNAcb1-" 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GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-08-13T19:58:41.994593\n\nModified on\n - 2019-09-12T11:54:47.554056\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the glycan sequences in Glycam IUPAC format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Mouse GlyTouCan accession master list (https://data.glygen.org/GLYDS000145). Source database: https://dev.glycam.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Glycam IUPAC\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycam_iupac.zip\n URI: https://data.glygen.org/ln2wwwdata/source/glycam_iupac.zip\n Output Subdomain\n Name: mouse_glycan_sequences_glycam_iupac.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_glycan_sequences_glycam_iupac.csv\n Name: mouse_glycan_sequences_glycam_iupac.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_glycan_sequences_glycam_iupac.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"1118\"\n Name: \"sequence_glycam_iupac\"\n Description: \"\"\n Unique Values: \"1118\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_sequences_glycam_iupac.csv" }