{ "bcoid": "GLY_000176", "title": "Glycan Sequences GLYCAM IUPAC (Rat GlyTouCan Masterlist)", "description": "The dataset provides the glycan sequences in Glycam IUPAC format for the associated glycans (GlyTouCan ...", "filename": "rat_glycan_sequences_glycam_iupac.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Glycan", "tags": "GLYCAM IUPAC sequence format", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00027MO...", "DManpa1-3[DM..." ], [ "G00031MO...", "DGalpb1-3DGa..." ] ], "headers": [ "glytoucan_ac...", "sequence_gly..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "sequence_glycam_iupac" } ], [ "G00027MO", "DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-" ], [ "G00031MO", "DGalpb1-3DGalpNAca1-" ], [ "G00049MO", "DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G00050MO", "LFucpa1-2DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G00051MO", "DGalpb1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00052MO", "LFucpa1-2DGalpb1-4[LFucpa1-3]DGlcpNAcb1-" ], [ "G00055MO", "DGalpb1-4DGlcpNAcb1-" ], [ "G00056MO", "DGalpb1-3DGlcpNAcb1-" ], [ "G00058MO", "DGalpb1-4DGlcpNAcb1-3DGalpb1-4DGlcpNAcb1-" ], [ "G00059MO", "DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G00065MO", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-" ], [ "G00066MO", "DGalpNAca1-3[LFucpa1-2]DGalpb1-" ], [ "G00068MO", "LFucpa1-2DGalpb1-" ], [ "G00176HZ", "DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2[DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G00199JR", "DManpa1-3DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAca1-" ], [ "G00320ZP", "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-3DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G00395TQ", "DManpa1-6DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G02149VR", "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGalpNAcb1-4[DNeup5Aca2-3]DGalpb1-4DGlcpb1-" ], [ "G02657AK", "DNeup5Aca2-8DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpb1-" ], [ "G03934XO", "DManpa1-2DManpa1-3[DManpa1-6]DManpa1-6[DManpa1-2DManpa1-2DManpa1-3]DManpb1-4DGlcpNAcb1-" ], [ "G04618ND", "DGalpNAcb1-3DGalpa1-3DGalpa1-3DGalpa1-3DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G04715SK", "DGalpNAca1-3[LFucpa1-2]DGalpb1-3DGlcpNAcb1-3DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G07483YN", "DGlcpNAcb1-2DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G08520NM", "DManpa1-3[DManpa1-6]DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G09724ZC", "DManpa1-3DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G09775CH", "DManpa1-2DManpa1-3/6[DManpa1-3/6]DManpa1-6[DManpa1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G09921WG", "DGalpb1-3DGlcpNAcb1-2DManpa1-3[DGalpb1-3DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G11041DA", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G11535IB", "DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G11637WL", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G15948XY", "DGalpNAc[3S]b1-4DGalpb1-4DGlcpb1-" ], [ "G16828VN", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G17689DH", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G17790QU", "DGalpNAcb1-3DGalpa1-3DGalpa1-3DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G17848HM", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G18140CR", "DManpa1-2DManpa1-2DManpa1-3[DManpa1-2DManpa1-3DManpa1-6]DManpb1-4DGlcpNAca1-" ], [ "G18938DW", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G19524AS", "DGalpNAca1-3[LFucpa1-2]DGalpb1-4DGlcpb1-" ], [ "G20815TK", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-3DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G20966TZ", "DManpa1-3[DManpa1-6]DManpa1-6[DGlcpNAcb1-2DManpa1-3][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G22573RC", "DManpa1-6DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G22768VO", "DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G23295TF", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G25129BT", "DGalpb1-3DGalpNAcb1-3DGalpa1-" ], [ "G25520XG", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G27919IH", "DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G28948UC", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-3DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G29011JC", "DGlcpNAcb1-2[DGlcpNAcb1-4]DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G29130SY", "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G29857RC", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G30159WR", "DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G30901GC", "DGalpb1-3DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G32156ZV", "DManpa1-3DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G32801HX", "DGalpa1-3[LFucpa1-2]DGalpb1-4[LFucpa1-3]DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G36123IU", "DNeup5Aca2-6DGalpNAca1-" ], [ "G36191CD", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G37135JQ", "DManpa1-2DManpa1-3[DManpa1-2DManpa1-6]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G39213VZ", "DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G40723AK", "DGalpNAca1-3[LFucpa1-2]DGalpb1-3DGlcpNAcb1-3[DGalpNAca1-3[LFucpa1-2]DGalpb1-3/4DGlcpNAcb1-6]DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G41474PO", "DGalpNAcb1-3DGalpa1-3DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G45359RY", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6[DGalpb1-4DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G45480RU", "DManpa1-2DManpa1-2DManpa1-3[DManpa1-6]DManpb1-4DGlcpNAca1-" ], [ "G47325QT", "DNeup5Ac[9A]a1-" ], [ "G49108TO", "DGlcpNAcb1-" ], [ "G50135PA", "DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3[DGalpNAcb1-4]DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G50427EN", "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-3DGalpb1-3DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G51367TM", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-3DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G51793MY", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G52934AK", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G53752TA", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G54733XO", "DNeup5Aca2-3DGalpb1-3[DNeup5Aca2-6]DGalpNAcb1-4[DNeup5Aca2-8DNeup5Aca2-3]DGalpb1-4DGlcpb1-" ], [ "G55220VL", "DManpa1-3[DManpa1-6]DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G56749GV", "DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-3[DNeup5Aca2-6DGalpb1-4DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G57020ER", "DManpa1-2DManpa1-3[DManpa1-6]DManpa1-6[DManpa1-2DManpa1-2DManpa1-3]DManpb1-4DGlcpNAca1-" ], [ "G58667NI", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G59471TH", "DGlcpNAcb1-2DManpa1-3[DGlcpNAcb1-2DManpa1-6][DGlcpNAcb1-4]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G60230HH", "DManpa1-2DManpa1-3[DManpa1-2DManpa1-6]DManpa1-6[DManpa1-2DManpa1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G61849OD", "DGalpa1-3DGalpa1-3DGalpa1-3DGalpa1-3DGalpa1-4DGalpb1-4DGlcpb1-" ], [ "G62389NM", "DGalpb1-4DGlcpNAcb1-2DManpa1-3[DManpa1-3DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G63238VS", "DGalpa1-3[LFucpa1-2]DGalpb1-3DGlcpNAcb1-3DGalpb1-4DGlcpb1-" ], [ "G63787RZ", "DNeup5Aca2-3DGalpb1-4DGlcpNAcb1-2DManpa1-6[DGlcpNAcb1-2DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G63889NK", "DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-4]DManpa1-3[DGalpb1-4DGlcpNAcb1-2[DGalpb1-4DGlcpNAcb1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-" ], [ "G64633BH", "DGalpb1-3DGlcpNAcb1-2DManpa1-3[DGalpb1-3DGlcpNAcb1-2DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-" ], [ "G65562ZE", "DNeup5Aca2-3DGalpb1-3DGalpNAca1-" ] ] }, "readme": "Name\n - Glycan Sequences GLYCAM IUPAC (Rat GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-08-13T19:58:41.962191\n\nModified on\n - 2019-09-12T11:54:15.372459\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides the glycan sequences in Glycam IUPAC format for the associated glycans (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Rat GlyTouCan accession master list (https://data.glygen.org/GLYDS000146). Source database: https://dev.glycam.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Glycam IUPAC\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycam_iupac.zip\n URI: https://data.glygen.org/ln2wwwdata/source/glycam_iupac.zip\n Output Subdomain\n Name: rat_glycan_sequences_glycam_iupac.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_sequences_glycam_iupac.csv\n Name: rat_glycan_sequences_glycam_iupac.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_sequences_glycam_iupac.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"122\"\n Name: \"sequence_glycam_iupac\"\n Description: \"\"\n Unique Values: \"122\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/rat_glycan_sequences_glycam_iupac.csv" }