{ "bcoid": "GLY_000175", "title": "Glycan Properties (Rat GlyTouCan Masterlist)", "description": "The dataset provides information on the glycan properties such as mass, permethlyated mass, topology, ...", "filename": "rat_glycan_properties.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Glycan", "tags": "Properties", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00026MO...", "Saccharide..." ], [ "G00027MO...", "Saccharide..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ty..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_type" }, { "type": "string", "label": "glycan_mass" }, { "type": "string", "label": "glycan_permass" }, { "type": "string", "label": "base_composition" }, { "type": "string", "label": "composition" }, { "type": "string", "label": "topology" }, { "type": "string", "label": "monosaccharides" } ], [ "G00026MO", "Saccharide", "910.32778041", "1148.5938316", "G28681TP", "G71678CK", "G21458SP", "5" ], [ "G00027MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G87067NW", "G89827NJ", "4" ], [ "G00028MO", "Saccharide", "1234.43342741", "1556.79337902", "G02815KT", "G89929IA", "G16127HW", "7" ], [ "G00029MO", "Saccharide", "1275.45997651", "1597.81992812", "G57776ZU", "G04263GM", "G37692XE", "7" ], [ "G00030MO", "Saccharide", "1316.48652562", "1638.84647723", "G35029YA", "G15843XU", "G26402SO", "7" ], [ "G00031MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G23052ZQ", "G67200RM", "2" ], [ "G00032MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G23052ZQ", "G14660IB", "2" ], [ "G00034MO", "Saccharide", "586.22213341", "740.39428418", "G58001LT", "G59848RU", "G27304YE", "3" ], [ "G00036MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G94131HY", "G68646SF", "2" ], [ "G00038MO", "Saccharide", "627.248682515", "781.420833285", "G40740AD", "G20174EZ", "G60735SE", "3" ], [ "G00042MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G94131HY", "G68646SF", "2" ], [ "G00046MO", "Saccharide", "342.1162117", "454.24141226", "G90627TW", "G90960QG", "G61666PA", "2" ], [ "G00049MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G44029SF", "4" ], [ "G00050MO", "Saccharide", "853.306316675", "1077.5567178", "G54630CD", "G82935CH", "G29900GO", "5" ], [ "G00051MO", "Saccharide", "529.200669675", "669.357170375", "G54129SE", "G02497EU", "G22725MK", "3" ], [ "G00052MO", "Saccharide", "675.258578545", "843.446379385", "G82458HY", "G22979OY", "G27653YS", "4" ], [ "G00055MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G08749AK", "G80981NI", "2" ], [ "G00056MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G08749AK", "G80981NI", "2" ], [ "G00058MO", "Saccharide", "748.27495691", "944.49405789", "G53434XO", "G83574AW", "G72872SQ", "4" ], [ "G00059MO", "Saccharide", "504.1690352", "658.34118597", "G39365VM", "G09269CO", "G78242EN", "3" ], [ "G00065MO", "Saccharide", "674.23817744", "856.44162835", "G22312GP", "G37772BP", "G90852NI", "3" ], [ "G00066MO", "Saccharide", "529.200669675", "669.357170375", "G54129SE", "G30886AB", "G11863LK", "3" ], [ "G00068MO", "Saccharide", "326.12129707", "424.23084756", "G08453HV", "G53862OE", "G44794CK", "2" ], [ "G00069MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G97048GO", "4" ], [ "G00070MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G97048GO", "4" ], [ "G00071MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G53509NM", "G07227QC", "4" ], [ "G00176HZ", "Saccharide", "1868.7031797", "2303.18833187", "G55382TU", "G76945EC", "G52953WI", "10" ], [ "G00199JR", "Saccharide", "869.301231305", "1107.56728249", "G15666IG", "G13628FE", "G38100RQ", "5" ], [ "G00320ZP", "Saccharide", "2513.87842253", "3130.56702561", "G84044GC", "G88057TN", "G72179WW", "12" ], [ "G00395TQ", "Saccharide", "894.33286578", "1118.5832669", "G93579XB", "G12641NB", "G19483CU", "5" ], [ "G00520NI", "Saccharide", "2683.94756477", "3328.66746799", "G54327SO", "G26044CJ", "G83344UL", "12" ], [ "G01223AA", "Saccharide", "2882.0466698", "3568.81352324", "G55216FT", "G81452FP", "G16603TV", "16" ], [ "G01367ZS", "Saccharide", "1624.59725799", "2017.03545995", "G59937CP", "G05049YU", "", "9" ], [ "G01453BU", "Saccharide", "894.33286578", "1118.5832669", "G93579XB", "G99932KY", "G03127JO", "5" ], [ "G02149VR", "Saccharide", "1580.53465771", "1986.98850974", "G34092QJ", "G25993OX", "G03828AM", "7" ], [ "G02244ID", "Saccharide", "2318.81536866", "2879.44137146", "G22643ZM", "G55698SS", "G81371RJ", "10" ], [ "G02657AK", "Saccharide", "1127.38641757", "1421.71506905", "G71981YX", "G10506KQ", "G34878UL", "5" ], [ "G03764XL", "Saccharide", "1972.71413836", "2449.24624074", "G93838EE", "G07975HS", "G01742GV", "10" ], [ "G03802LT", "Saccharide", "1786.65008149", "2221.13523366", "G83555HU", "G76605ZF", "G49086NE", "10" ], [ "G03934XO", "Saccharide", "1517.51252531", "1923.96637734", "G82985VK", "G89621BX", "G05436VV", "9" ], [ "G04595ZA", "Saccharide", "1827.6766306", "2262.16178277", "G68318VE", "G80294ZS", "", "10" ], [ "G04618ND", "Saccharide", "1193.4068783", "1515.76682992", "G05645NK", "G53697BI", "G35218BT", "7" ], [ "G04689DA", "Saccharide", "1558.53907441", "1964.99292644", "G31852PQ", "G18662IW", "G64916BF", "9" ], [ "G04715SK", "Saccharide", "1421.51788538", "1771.90913713", "G10339FR", "G06971WM", "G00969CV", "8" ], [ "G05724WC", "Saccharide", "1154.43370212", "1434.74670352", "G29063QY", "G64123ZS", "G27642RO", "6" ], [ "G06069CG", "Saccharide", "1786.65008149", "2221.13523366", "G83555HU", "G01924ZE", "G27658AJ", "10" ], [ "G06661NE", "Saccharide", "1039.37037354", "1305.66772487", "G49139YY", "G83604ZB", "G10651WD", "5" ], [ "G07394RV", "Saccharide", "1127.38641757", "1421.71506905", "G71981YX", "G91878CY", "G98009XH", "5" ], [ "G07430HH", "Saccharide", "910.32778041", "1148.5938316", "G28681TP", "G04582LB", "G64459DC", "5" ], [ "G07483YN", "Saccharide", "1259.46506188", "1567.80936342", "G80475RE", "G09140IH", "G40932HD", "7" ], [ "G08371CD", "Saccharide", "512.18535394", "652.34185464", "G87636JF", "G77854OM", "G08178PQ", "2" ], [ "G08520NM", "Saccharide", "1437.51280002", "1801.91970183", "G39446WN", "G32909UL", "G43463XA", "8" ], [ "G08712ES", "Saccharide", "1973.73453947", "2436.25099178", "G19379ID", "G04604QI", "", "11" ], [ "G09394JN", "Saccharide", "1786.65008149", "2221.13523366", "G83555HU", "G01924ZE", "G42824SU", "10" ], [ "G09635US", "Saccharide", "2223.80340699", "2756.39810966", "G83282IU", "G79625ND", "G02079RR", "12" ], [ "G09724ZC", "Saccharide", "1072.38060391", "1352.69360531", "G92050GC", "G86052EW", "G58858DY", "6" ], [ "G09775CH", "Saccharide", "1558.53907441", "1964.99292644", "G31852PQ", "G18662IW", "G68588ED", "9" ], [ "G09921WG", "Saccharide", "1786.65008149", "2221.13523366", "G83555HU", "G01924ZE", "G27658AJ", "10" ], [ "G10820KD", "Saccharide", "1973.73453947", "2436.25099178", "G19379ID", "G04604QI", "G02358GX", "11" ], [ "G10898KH", "Saccharide", "1973.73453947", "2436.25099178", "G19379ID", "G04604QI", "", "11" ], [ "G11041DA", "Saccharide", "2077.74549812", "2582.30890064", "G70382FA", "G40436IV", "G32340DX", "11" ], [ "G11535IB", "Saccharide", "1681.61872173", "2088.07257376", "G72790NZ", "G97126PW", "G26518BW", "9" ], [ "G11637WL", "Saccharide", "1745.62353238", "2180.10868456", "G03574QJ", "G82230HL", "G28492PA", "10" ], [ "G12150CK", "Saccharide", "1519.56589823", "1883.97280004", "G49955PK", "G41029CD", "G62257HU", "8" ], [ "G14548ZL", "Saccharide", "1720.59189791", "2169.09270015", "G62765YT", "G21194PE", "G34375BU", "10" ], [ "G14576KZ", "Saccharide", "1259.46506188", "1567.80936342", "G80475RE", "G09140IH", "G40932HD", "7" ], [ "G15948XY", "Saccharide", "625.152398895", "765.308899595", "G06932DR", "G21259BQ", "G73358GA", "3" ], [ "G15956KF", "Saccharide", "1396.48625091", "1760.89315273", "G41247ZX", "G69667ML", "G84983EE", "8" ], [ "G16612QG", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G23052ZQ", "G67200RM", "2" ], [ "G16828VN", "Saccharide", "1599.56562351", "2006.01947554", "G28541PG", "G55719HL", "G95951LZ", "9" ], [ "G17689DH", "Saccharide", "2368.84091476", "2943.48256763", "G42039FI", "G83385WA", "G69616RY", "12" ], [ "G17790QU", "Saccharide", "1031.35405481", "1311.6670562", "G53969DE", "G68302RL", "G57814YS", "6" ], [ "G17843DM", "Saccharide", "789.301506015", "985.520606995", "G88713AC", "G08017ND", "G33964KE", "4" ], [ "G17848HM", "Saccharide", "2118.77204723", "2623.33544975", "G26469QK", "G51359PF", "G35118MS", "11" ], [ "G18140CR", "Saccharide", "1355.45970181", "1719.86660362", "G85945LZ", "G54095ZD", "G97371GW", "8" ], [ "G18641IV", "Saccharide", "2005.72436873", "2496.27212117", "G60033FS", "G91161EQ", "G91496ML", "11" ], [ "G18892PE", "Saccharide", "627.248682515", "781.420833285", "G40740AD", "G20174EZ", "G35689CT", "3" ], [ "G18938DW", "Saccharide", "2370.85656483", "2945.4982177", "G43669FQ", "G57860PF", "G47246AJ", "13" ], [ "G19059PI", "Saccharide", "", "", "", "", "", "" ], [ "G19524AS", "Saccharide", "691.253493175", "873.456944085", "G11235SR", "G25105CR", "G52414WY", "4" ], [ "G19588HA", "Saccharide", "2151.78227759", "2670.36133019", "G44211QA", "G15715XI", "G10328BW", "12" ], [ "G20079RG", "Saccharide", "1827.6766306", "2262.16178277", "G68318VE", "G80294ZS", "G47133WV", "10" ], [ "G20372QO", "Saccharide", "1243.47014726", "1537.79879873", "G61099GA", "G06194QO", "G50183RQ", "7" ], [ "G20815TK", "Saccharide", "2005.72436873", "2496.27212117", "G60033FS", "G50293LU", "G91496ML", "11" ] ] }, "readme": "Name\n - Glycan Properties (Rat GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-08-13T19:58:41.960689\n\nModified on\n - \n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan properties such as mass, permethlyated mass, topology, base composition, composition and the number of monosaccharides for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Rat GlyTouCan accession master list (https://data.glygen.org/GLYDS000146). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Properties\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_properties.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/glycan_properties.tsv\n Output Subdomain\n Name: rat_glycan_properties.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_properties.csv\n Name: rat_glycan_properties.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_properties.stat.csv\n\nFields\n Name: \"glycan_mass\"\n Description: \"Derivatized mass of the glycan\"\n Unique Values: \"139\"\n Name: \"glytoucan_type\"\n Description: \"Type of GlyTouCan accession (composition|saccharide|topology)\"\n Unique Values: \"1\"\n Name: \"base_composition\"\n Description: \"Base composition of the glycan\"\n Unique Values: \"140\"\n Name: \"glycan_permass\"\n Description: \"\"\n Unique Values: \"139\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"291\"\n Name: \"monosaccharides\"\n Description: \"Number of monosaccharides in glycan\"\n Unique Values: \"17\"\n Name: \"composition\"\n Description: \"Composition of glycan\"\n Unique Values: \"165\"\n Name: \"topology\"\n Description: \"Topology of the glycan\"\n Unique Values: \"194\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/rat_glycan_properties.csv" }