{ "bcoid": "GLY_000174", "title": "Glycan Motif (Rat GlyTouCan Masterlist)", "description": "The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). ...", "filename": "rat_glycan_motif.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Glycan", "tags": "Motif", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00026MO...", "G00026MO..." ], [ "G00027MO...", "G00027MO..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_ac_motif" }, { "type": "string", "label": "motif_name" } ], [ "G00026MO", "G00026MO", "N-Glycan core basic" ], [ "G00027MO", "G00027MO", "N-Glycan truncated motif. First GlcpNAC cut off" ], [ "G00028MO", "G00026MO", "N-Glycan core basic" ], [ "G00028MO", "G00028MO", "N-Glycan high mannose" ], [ "G00029MO", "G00026MO", "N-Glycan core basic" ], [ "G00029MO", "G00029MO", "N-Glycan hybrid" ], [ "G00030MO", "G00026MO", "N-Glycan core basic" ], [ "G00030MO", "G00030MO", "N-Glycan complex" ], [ "G00031MO", "G00031MO", "O-Glycan core 1" ], [ "G00031MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00032MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00034MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00034MO", "G00034MO", "O-Glycan core 2 fuzzy" ], [ "G00034MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00036MO", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00038MO", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00038MO", "G00038MO", "O-Glycan core 4 fuzzy" ], [ "G00038MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00042MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00046MO", "G00046MO", "Galalpha1-3Gal epitope" ], [ "G00049MO", "G00049MO", "Lewis C" ], [ "G00049MO", "G00056MO", "Neo Lactosamine" ], [ "G00049MO", "G00069MO", "Glycosphingolipid Lacto series" ], [ "G00050MO", "G00049MO", "Lewis C" ], [ "G00050MO", "G00050MO", "Lewis D" ], [ "G00050MO", "G00056MO", "Neo Lactosamine" ], [ "G00050MO", "G00068MO", "Blood group H" ], [ "G00050MO", "G00069MO", "Glycosphingolipid Lacto series" ], [ "G00051MO", "G00051MO", "Lewis X" ], [ "G00051MO", "G00055MO", "Lactosamine motif" ], [ "G00052MO", "G00051MO", "Lewis X" ], [ "G00052MO", "G00052MO", "Lewis Y" ], [ "G00052MO", "G00055MO", "Lactosamine motif" ], [ "G00052MO", "G00068MO", "Blood group H" ], [ "G00055MO", "G00055MO", "Lactosamine motif" ], [ "G00056MO", "G00056MO", "Neo Lactosamine" ], [ "G00058MO", "G00055MO", "Lactosamine motif" ], [ "G00058MO", "G00058MO", "Polylactosamine" ], [ "G00059MO", "G00059MO", "Pk-Antigen" ], [ "G00065MO", "G00055MO", "Lactosamine motif" ], [ "G00065MO", "G00065MO", "VIM" ], [ "G00066MO", "G00066MO", "Blood group A" ], [ "G00066MO", "G00068MO", "Blood group H" ], [ "G00068MO", "G00068MO", "Blood group H" ], [ "G00069MO", "G00056MO", "Neo Lactosamine" ], [ "G00069MO", "G00069MO", "Glycosphingolipid Lacto series" ], [ "G00070MO", "G00055MO", "Lactosamine motif" ], [ "G00070MO", "G00070MO", "Glycosphingolipid Neo-lacto series" ], [ "G00071MO", "G00071MO", "Glycosphingolipid Ganglio series" ], [ "G00176HZ", "G00026MO", "N-Glycan core basic" ], [ "G00176HZ", "G00030MO", "N-Glycan complex" ], [ "G00320ZP", "G00026MO", "N-Glycan core basic" ], [ "G00320ZP", "G00030MO", "N-Glycan complex" ], [ "G00320ZP", "G00056MO", "Neo Lactosamine" ], [ "G00520NI", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00520NI", "G00055MO", "Lactosamine motif" ], [ "G00520NI", "G00058MO", "Polylactosamine" ], [ "G01223AA", "G00026MO", "N-Glycan core basic" ], [ "G01223AA", "G00030MO", "N-Glycan complex" ], [ "G01223AA", "G00055MO", "Lactosamine motif" ], [ "G01223AA", "G00058MO", "Polylactosamine" ], [ "G01367ZS", "G00026MO", "N-Glycan core basic" ], [ "G01367ZS", "G00029MO", "N-Glycan hybrid" ], [ "G01453BU", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G01453BU", "G00034MO", "O-Glycan core 2 fuzzy" ], [ "G01453BU", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G01453BU", "G00055MO", "Lactosamine motif" ], [ "G01453BU", "G00056MO", "Neo Lactosamine" ], [ "G01453BU", "G00068MO", "Blood group H" ], [ "G02149VR", "G00071MO", "Glycosphingolipid Ganglio series" ], [ "G02244ID", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G02244ID", "G00055MO", "Lactosamine motif" ], [ "G02244ID", "G00058MO", "Polylactosamine" ], [ "G03764XL", "G00026MO", "N-Glycan core basic" ], [ "G03764XL", "G00030MO", "N-Glycan complex" ], [ "G03764XL", "G00055MO", "Lactosamine motif" ], [ "G03802LT", "G00026MO", "N-Glycan core basic" ], [ "G03934XO", "G00027MO", "N-Glycan truncated motif. First GlcpNAC cut off" ], [ "G04595ZA", "G00026MO", "N-Glycan core basic" ], [ "G04595ZA", "G00030MO", "N-Glycan complex" ], [ "G04595ZA", "G00055MO", "Lactosamine motif" ], [ "G04595ZA", "G00056MO", "Neo Lactosamine" ], [ "G04618ND", "G00046MO", "Galalpha1-3Gal epitope" ], [ "G04618ND", "G00059MO", "Pk-Antigen" ] ] }, "readme": "Name\n - Glycan Motif (Rat GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-08-13T19:58:41.959311\n\nModified on\n - \n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Rat GlyTouCan accession master list (https://data.glygen.org/GLYDS000146). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Motif\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: allmotif.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/allmotif.tsv\n Output Subdomain\n Name: rat_glycan_motif.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_motif.csv\n Name: rat_glycan_motif.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_motif.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"266\"\n Name: \"glytoucan_ac_motif\"\n Description: \"\"\n Unique Values: \"26\"\n Name: \"motif_name\"\n Description: \"Name of the motif associated with the glycan\"\n Unique Values: \"26\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/rat_glycan_motif.csv" }