{ "bcoid": "GLY_000159", "title": "Glycan Xref ChEBI [PubChem CID] (Human GlyTouCan Masterlist)", "description": "The dataset provides cross-references to ChEBI Id's for the associated glycan (GlyTouCan Accession) based ...", "filename": "human_glycan_xref_chebi.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Glycan", "tags": "ChEBI cross-references(PUBCHEM CID)", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G68158BT...", "4139..." ], [ "G49108TO...", "28009..." ] ], "headers": [ "glytoucan_ac...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "G68158BT", "4139", "ChEBI" ], [ "G49108TO", "28009", "ChEBI" ], [ "G27025MB", "28037", "ChEBI" ], [ "G57321FI", "40356", "ChEBI" ], [ "G73578JC", "17725", "ChEBI" ], [ "G26039ES", "75323", "ChEBI" ], [ "G89565QL", "75278", "ChEBI" ], [ "G61406KC", "53480", "ChEBI" ], [ "G80126GC", "71432", "ChEBI" ], [ "G64581RP", "506227", "ChEBI" ], [ "G00055MO", "16153", "ChEBI" ], [ "G42666HT", "50670", "ChEBI" ], [ "G07982RO", "28681", "ChEBI" ], [ "G96881BQ", "42548", "ChEBI" ], [ "G38999IM", "27907", "ChEBI" ], [ "G01534TU", "61243", "ChEBI" ], [ "G03499BP", "62327", "ChEBI" ], [ "G45827GY", "30248", "ChEBI" ], [ "G04616ST", "27707", "ChEBI" ], [ "G19577LJ", "28393", "ChEBI" ], [ "G50850NI", "49026", "ChEBI" ], [ "G94923PG", "44678", "ChEBI" ], [ "G60230HH", "62692", "ChEBI" ], [ "G00049MO", "53481", "ChEBI" ], [ "G00059MO", "68485", "ChEBI" ], [ "G00068MO", "61529", "ChEBI" ], [ "G39023AU", "59295", "ChEBI" ], [ "G00031MO", "61820", "ChEBI" ], [ "G67988RO", "59314", "ChEBI" ], [ "G81345OW", "62307", "ChEBI" ], [ "G91237TK", "59226", "ChEBI" ], [ "G00619DD", "61794", "ChEBI" ], [ "G61459JW", "42088", "ChEBI" ], [ "G22768VO", "71495", "ChEBI" ], [ "G54826OZ", "62990", "ChEBI" ], [ "G30207PZ", "63155", "ChEBI" ], [ "G63069TR", "71696", "ChEBI" ], [ "G65070VQ", "62355", "ChEBI" ], [ "G40696TO", "59296", "ChEBI" ], [ "G48027TR", "36226", "ChEBI" ], [ "G51331BY", "60152", "ChEBI" ], [ "G48059CD", "60239", "ChEBI" ], [ "G00076PK", "61832", "ChEBI" ], [ "G82950HY", "61581", "ChEBI" ], [ "G37619KE", "61580", "ChEBI" ], [ "G88876JQ", "62295", "ChEBI" ], [ "G21856LC", "59216", "ChEBI" ], [ "G00056MO", "61246", "ChEBI" ], [ "G06239NA", "61758", "ChEBI" ], [ "G98465JN", "65245", "ChEBI" ], [ "G78074HX", "59443", "ChEBI" ], [ "G34022KC", "61329", "ChEBI" ], [ "G97569KL", "62078", "ChEBI" ], [ "G56299XO", "61579", "ChEBI" ], [ "G41372SJ", "85406", "ChEBI" ], [ "G01187XC", "62287", "ChEBI" ], [ "G90387AM", "61711", "ChEBI" ], [ "G77824XV", "61596", "ChEBI" ], [ "G10203DW", "52472", "ChEBI" ], [ "G61071JD", "50677", "ChEBI" ], [ "G58896AZ", "61844", "ChEBI" ], [ "G00047MO", "62265", "ChEBI" ], [ "G06580KR", "59487", "ChEBI" ], [ "G00035MO", "71344", "ChEBI" ], [ "G33476GF", "71348", "ChEBI" ], [ "G94798MK", "63232", "ChEBI" ], [ "G17689DH", "87782", "ChEBI" ], [ "G76355TG", "60944", "ChEBI" ], [ "G00037MO", "71341", "ChEBI" ], [ "G20624LQ", "53458", "ChEBI" ], [ "G00054MO", "71622", "ChEBI" ], [ "G62763GO", "546808", "ChEBI" ], [ "G00065MO", "71612", "ChEBI" ], [ "G00057MO", "68448", "ChEBI" ], [ "G65562ZE", "65257", "ChEBI" ], [ "G18625KA", "59212", "ChEBI" ], [ "G02657AK", "59218", "ChEBI" ], [ "G37184KW", "59222", "ChEBI" ], [ "G46677TE", "59209", "ChEBI" ], [ "G98544DH", "59210", "ChEBI" ], [ "G68110IF", "59215", "ChEBI" ], [ "G92175CL", "59221", "ChEBI" ], [ "G00052MO", "59045", "ChEBI" ], [ "G26295XE", "59034", "ChEBI" ] ] }, "readme": "Name\n - Glycan Xref ChEBI [PubChem CID] (Human GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-08-13T19:58:41.938103\n\nModified on\n - 2019-09-12T12:00:51.241048\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The dataset provides cross-references to ChEBI Id's for the associated glycan (GlyTouCan Accession) based on the GlyTouCan to PubChem CID mapping (https://data.glygen.org/GLYDS000167) . One-to-many PubChem CID to ChEBI mappings are resolved using InChI seqences downloaded from both (PubChem CID and ChEBI) databases. The listed GlyTouCan Accessions are derived from the Human GlyTouCan accession master list (https://data.glygen.org/GLYDS000144). Source database: https://glytoucan.org/; https://pubchem.ncbi.nlm.nih.gov/;https://www.ebi.ac.uk/chebi/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - ChEBI (PubChem CID)\n - Cross-references\n - ID/Accession Mapping\n\n Pipeline Steps\n - Step-1: A python script was generated to use the GlyTouCan Ac. to PubChem CID mapping file to extract the PubChem CID to ChEBI ID mapping from the PubChem FTP download file.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: CID-Synonym-filtered_2019_05_06_10_23_08\n URI: https://data.glygen.org/ln2wwwdata/source/CID-Synonym-filtered_2019_05_06_10_23_08\n Name: chebiId_inchi.tsv\n URI: https://data.glygen.org/ln2wwwdata/source/chebiId_inchi.tsv\n Name: cid2inchi.csv\n URI: https://data.glygen.org/ln2wwwdata/source/cid2inchi.csv\n Output Subdomain\n Name: human_glycan_xref_chebi.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_glycan_xref_chebi.csv\n Name: human_glycan_xref_chebi.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_glycan_xref_chebi.stat.csv\n\nFields\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"207\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"207\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_xref_chebi.csv" }