{ "bcoid": "GLY_000138", "title": "Human UniCarbKB Citations", "description": "The Human UniCarbKB Citations contains human [taxid:9606] publication information of glycoproteins from ...", "filename": "human_proteoform_citations_unicarbkb.csv", "filetype": "csv", "categories": { "species": "Homo Sapiens", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "O95998-2...", "22171320..." ], [ "P00734-1...", "22171320..." ] ], "headers": [ "uniprotkb_ca...", "pmid..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "pmid" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" } ], [ "O95998-2", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P00734-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P00742-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P01009-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P01133-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P01344-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P01876-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P02656-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P02760-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P02763-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P02765-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P04070-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P04233-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P04921-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P05090-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P05154-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P05155-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P07911-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P09603-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P10643-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P15151-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P16070-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P19652-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P19823-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P25311-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P25445-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P26842-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P34741-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P39059-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P41222-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P78423-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P80370-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P98095-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P98160-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q13361-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q13508-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q14624-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q16849-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q4LDE5-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q68CJ9-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q6EMK4-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q6UWD8-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q6UXB8-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q8NFU4-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q8TDQ0-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q96FE7-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q96IY4-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q99075-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q9GZM5-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q9UFP1-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q9UHG2-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "Q9ULI3-1", "22171320", "Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.", "Molecular & cellular proteomics : MCP", "2012 Apr", "Halim A, Nilsson J, Ruetschi U, Hesse C, Larson G" ], [ "P01215-1", "1820200", "Site-specific N-glycosylation of human chorionic gonadotrophin--structural analysis of glycopeptides by one- and two-dimensional 1H NMR spectroscopy.", "Glycobiology", "1991 Sep", "Weisshaar G, Hiyama J, Renwick AG" ], [ "P02771-1", "6192908", "Sugar chain of alpha-fetoprotein produced in human yolk sac tumor.", "Cancer research", "1983 Oct", "Yamashita K, Hitoi A, Tsuchida Y, Nishi S, Kobata A" ], [ "P04278-1", "23001782", "Micro- and macroheterogeneity of N-glycosylation yields size and charge isoforms of human sex hormone binding globulin circulating in serum.", "Proteomics", "2012 Nov", "Sumer-Bayraktar Z, Nguyen-Khuong T, Jayo R, Chen DD, Ali S, Packer NH, Thaysen-Andersen M" ], [ "P08861-1", "1898343", "Carbohydrate structure of human pancreatic elastase 1.", "The Biochemical journal", "1991 Sep 1", "Wendorf P, Linder D, Sziegoleit A, Geyer R" ], [ "P29965-1", "11676606", "Determination of carbohydrate structures N-linked to soluble CD154 and characterization of the interactions of CD40 with CD154 expressed in Pichia pastoris and Chinese hamster ovary cells.", "Protein expression and purification", "2001 Nov", "Khandekar SS, Silverman C, Wells-Marani J, Bacon AM, Birrell H, Brigham-Burke M, DeMarini DJ, Jonak ZL, Camilleri P, Fishman-Lobell J" ], [ "P01871-1", "24706782", "Expression and glycoengineering of functionally active heteromultimeric IgM in plants.", "Proceedings of the National Academy of Sciences of the United States of America", "2014 Apr 29", "Loos A, Gruber C, Altmann F, Mehofer U, Hensel F, Grandits M, Oostenbrink C, Stadlmayr G, Furtmuller PG, Steinkellner H" ], [ "P28300-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P00738-1", "24841998", "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "Proteomics", "2014 Aug", "Kontro H, Joenvaara S, Haglund C, Renkonen R" ], [ "Q8WXD2-1", "23234360", "LC-MS/MS characterization of O-glycosylation sites and glycan structures of human cerebrospinal fluid glycoproteins.", "Journal of proteome research", "2013 Feb 1", "Halim A, Ruetschi U, Larson G, Nilsson J" ], [ "P26006-2", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P01861-1", "24766575", "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "Journal of proteome research", "2014 Jun 6", "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P" ], [ "P50454-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P01876-1", "24766575", "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "Journal of proteome research", "2014 Jun 6", "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P" ], [ "Q5CZC0-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P55058-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P05156-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P01877-1", "24766575", "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "Journal of proteome research", "2014 Jun 6", "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P" ], [ "P02763-1", "24841998", "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "Proteomics", "2014 Aug", "Kontro H, Joenvaara S, Haglund C, Renkonen R" ], [ "P19022-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P01871-1", "24766575", "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "Journal of proteome research", "2014 Jun 6", "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P" ], [ "Q13308-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "Q92823-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P11279-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P01871-1", "24841998", "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "Proteomics", "2014 Aug", "Kontro H, Joenvaara S, Haglund C, Renkonen R" ], [ "P01857-1", "24766575", "Efficient and accurate glycopeptide identification pipeline for high-throughput site-specific N-glycosylation analysis.", "Journal of proteome research", "2014 Jun 6", "Liu M, Zhang Y, Chen Y, Yan G, Shen C, Cao J, Zhou X, Liu X, Zhang L, Shen H, Lu H, He F, Yang P" ], [ "P03956-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "Q13018-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "Q13201-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P07602-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P04275-1", "23345538", "Glycoproteomic analysis of the secretome of human endothelial cells.", "Molecular & cellular proteomics : MCP", "2013 Apr", "Yin X, Bern M, Xing Q, Ho J, Viner R, Mayr M" ], [ "P00450-1", "24841998", "Comparison of sialylated N-glycopeptide levels in serum of pancreatic cancer patients, acute pancreatitis patients, and healthy controls.", "Proteomics", "2014 Aug", "Kontro H, Joenvaara S, Haglund C, Renkonen R" ], [ "P02656-1", "23234360", "LC-MS/MS characterization of O-glycosylation sites and glycan structures of human cerebrospinal fluid glycoproteins.", "Journal of proteome research", "2013 Feb 1", "Halim A, Ruetschi U, Larson G, Nilsson J" ] ] }, "readme": "Name\n - Human UniCarbKB Citations\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-04-16T16:31:37.511217\n\nModified on\n - 2019-09-12T16:06:49.440561\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniCarbKB Citations contains human [taxid:9606] publication information of glycoproteins from UniCarbKB. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID from UniCarbKB. The dataset is contributed by UniCarbKB and processed by GlyGen. If you use this dataset please provide proper attribution to UniCarbKB and GlyGen [UniCarbKB - https://academic.oup.com/nar/article/42/D1/D215/1052197 ,https://doi.org/10.1093/nar/gkt1128]\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - UniCarbKB\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Output Subdomain\n Name: human_proteoform_citations_unicarbkb.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_citations_unicarbkb.csv\n Name: human_proteoform_citations_unicarbkb.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_proteoform_citations_unicarbkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"616\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"113\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"30\"\n Name: \"authors\"\n Description: \"\"\n Unique Values: \"111\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"107\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"113\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_proteoform_citations_unicarbkb.csv" }