{
    "bcoid": "GLY_000130",
    "title": "Mouse UniProtKB Xref UniCarbKB",
    "description": "The Mouse UniProtKB Xref UniCarbKB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...",
    "filename": "mouse_protein_xref_unicarbkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "Mus Musculus",
        "molecule": "Protein",
        "tags": "Unicarbkb cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "O08537-1...",
                "O08537..."
            ],
            [
                "Q8C1C1-1...",
                "Q8C1C1..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "database_id..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "database_id"
                },
                {
                    "type": "string",
                    "label": "database_label"
                }
            ],
            [
                "O08537-1",
                "O08537",
                ""
            ],
            [
                "Q8C1C1-1",
                "Q8C1C1",
                ""
            ],
            [
                "O09164-1",
                "O09164",
                ""
            ],
            [
                "P01575-1",
                "P01575",
                ""
            ],
            [
                "P55850-1",
                "P55850",
                ""
            ],
            [
                "Q05769-1",
                "Q05769",
                ""
            ],
            [
                "Q61508-1",
                "Q61508",
                ""
            ],
            [
                "P18242-1",
                "P18242",
                ""
            ],
            [
                "Q8BYI9-1",
                "Q8BYI9",
                ""
            ],
            [
                "P20239-1",
                "P20239",
                ""
            ],
            [
                "P24622-1",
                "P24622",
                ""
            ],
            [
                "P04925-1",
                "P04925",
                ""
            ],
            [
                "P10761-1",
                "P10761",
                ""
            ],
            [
                "Q09163-1",
                "Q09163",
                ""
            ],
            [
                "P16675-1",
                "P16675",
                ""
            ],
            [
                "Q8VCI0-1",
                "Q8VCI0",
                ""
            ],
            [
                "Q9Z1Q4-1",
                "Q9Z1Q4",
                ""
            ],
            [
                "P06797-1",
                "P06797",
                ""
            ],
            [
                "P55849-1",
                "P55849",
                ""
            ],
            [
                "P08101-1",
                "P08101",
                ""
            ],
            [
                "P19785-1",
                "P19785",
                ""
            ],
            [
                "P17439-1",
                "P17439",
                ""
            ],
            [
                "P11438-1",
                "P11438",
                ""
            ],
            [
                "P14220-1",
                "P14220",
                ""
            ],
            [
                "O89023-1",
                "O89023",
                ""
            ],
            [
                "Q9CPW5-1",
                "Q9CPW5",
                ""
            ],
            [
                "P01193-1",
                "P01193",
                ""
            ],
            [
                "Q9Z0L8-1",
                "Q9Z0L8",
                ""
            ]
        ]
    },
    "readme": "Name\n   - Mouse UniProtKB Xref UniCarbKB\n\nVersion\n   - 1.4.5\n\nCreated on\n  - 2019-03-15T16:53:52.791212\n\nModified on\n   - 2019-09-12T17:31:48.411453\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse UniProtKB Xref UniCarbKB contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to UniCarbKB database accessions/identifiers. UniCarbKB is an initiative that aims to promote the creation of an online information storage and search platform for glycomics and glycobiology research. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - glycoprotein\n   - glycan\n   - UniCarbKB\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to UniCarbKB database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-10090-mus-musculus-2019-05.nt\n      URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-10090-mus-musculus-2019-05.nt\n      Name: mouse_protein_idmapping.csv\n      URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_idmapping.csv\n   Output Subdomain\n      Name: mouse_protein_xref_unicarbkb.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_unicarbkb.csv\n      Name: mouse_protein_xref_unicarbkb.stat.csv\n      URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_unicarbkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n      Unique Values: \"28\"\n      Name: \"database_label\"\n     Description: \"Label or name assigned to the corresponding identifier in the source database\"\n      Unique Values: \"1\"\n      Name: \"database_id\"\n     Description: \"Identifier in the database\"\n      Unique Values: \"28\"",
    "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_protein_xref_unicarbkb.csv"
}