{ "bcoid": "GLY_000114", "title": "Mouse UniProtKB Xref OMA", "description": "The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_oma.csv", "filetype": "csv", "categories": { "species": "Mus Musculus", "molecule": "Protein", "tags": "Oma cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "LMVLTFW..." ], [ "Q8BH27-1...", "NGCLPCQ..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8BH24-1", "LMVLTFW", "" ], [ "Q8BH27-1", "NGCLPCQ", "" ], [ "Q8BH26-1", "LPFWFWT", "" ], [ "Q8VF69-1", "MYFGPAI", "" ], [ "Q8VF62-1", "FGAVAHM", "" ], [ "Q8VF66-1", "RSTISYH", "" ], [ "Q8VF65-1", "DTVHISC", "" ], [ "Q8VF64-1", "TINEMVV", "" ], [ "B2RXV4-1", "YVSFIGQ", "" ], [ "Q9CXG9-1", "MNEILIC", "" ], [ "Q07968-1", "STTYRHG", "" ], [ "Q9CXG3-1", "YNLNAFF", "" ], [ "B1AQ89-1", "CAIPCCA", "" ], [ "A0A1B0GST9-1", "MIVRCAK", "" ], [ "B1AQ87-1", "CEESCCC", "" ], [ "B1AQ85-1", "SCCQPQC", "" ], [ "P03899-1", "DAYECGI", "" ], [ "O35153-1", "QNRYLDS", "" ], [ "P03893-1", "HFWVPEV", "" ], [ "Q9QYH9-1", "RTPRYPK", "" ], [ "P52479-1", "SVETKYS", "" ], [ "A0A1Y7VJ58-1", "GCKQCCC", "" ], [ "P02762-1", "TMADRVN", "" ], [ "Q9QYH6-1", "NAKEMPN", "" ], [ "Q3SXJ3-1", "SECIVQV", "" ], [ "O08537-1", "VESHHEY", "" ], [ "Q08AU7-1", "CTELCQL", "" ], [ "A0A087WSM5-1", "FHSYERI", "" ], [ "A2AVK5-1", "YTCASHV", "" ], [ "Q80YU0-1", "FYEMGCL", "" ], [ "Q61406-1", "WLPTPKC", "" ], [ "Q5SRT8-1", "HVFYKFQ", "" ], [ "A0A140LIA7-1", "EKAAWTV", "" ], [ "P70419-1", "PLQKWIF", "" ], [ "Q9EP78-1", "CRKYPVV", "" ], [ "Q9EP79-1", "CIQILMA", "" ], [ "Q3URK3-1", "VCSGGIT", "" ], [ "Q9EP72-1", "PYPLKMR", "" ], [ "Q9EP73-1", "ANEIFYC", "" ], [ "Q9EP71-1", "LLCEHKC", "" ], [ "Q9EP75-1", "ERWIDQD", "" ], [ "Q3URK1-1", "LEDICLY", "" ], [ "S4R213-1", "VHPWADV", "" ], [ "P53702-1", "ALHAREC", "" ], [ "Q8R349-1", "VRQYIDQ", "" ], [ "Q8R344-1", "QMEDISQ", "" ], [ "O08911-1", "TVCSAWD", "" ], [ "O08912-1", "IKHDRKT", "" ], [ "O08915-1", "YEVIEHC", "" ], [ "O08914-1", "MQPWKYD", "" ], [ "O08917-1", "QYDSEVK", "" ], [ "O08918-1", "DLWSLTS", "" ], [ "Q80WC1-1", "FNDEHQE", "" ], [ "Q80WC7-1", "SDCKRNK", "" ], [ "Q9JHY4-1", "SKPGYCP", "" ], [ "Q91ZK4-1", "QLDTDQP", "" ], [ "Q91ZK0-1", "YYQQLHH", "" ], [ "Q8BZM0-1", "TEPFIRC", "" ], [ "Q8BZM1-1", "CIDEGHI", "" ], [ "Q4VC33-1", "RQETATC", "" ], [ "Q8BTJ4-1", "TCLIIIM", "" ], [ "Q4G5Y1-1", "SDAWIYC", "" ], [ "F8VQK3-1", "QNWPNIH", "" ], [ "A2AT96-1", "MVYATTE", "" ], [ "Q7M729-1", "WWSYNSS", "" ], [ "Q7M724-1", "SHYIFFC", "" ], [ "Q7M725-1", "TEYITYI", "" ], [ "Q7M720-1", "GLRIMIF", "" ], [ "Q7M721-1", "FCQAIIF", "" ], [ "Q7M722-1", "IFSPDIY", "" ], [ "Q7M723-1", "FTIWIIT", "" ], [ "P10649-1", "MILAYWD", "" ], [ "P10648-1", "NEMIIVL", "" ], [ "Q3UHF7-1", "IKMSTFG", "" ], [ "Q3UHF3-1", "NFEHALM", "" ], [ "Q9D516-1", "VGNYHST", "" ], [ "Q9D517-1", "INFIQLC", "" ], [ "Q9D513-1", "DFYSLGD", "" ], [ "Q9D519-1", "INSSWVI", "" ], [ "Q8K2M0-1", "WDESLTQ", "" ], [ "P21661-1", "PQRGVLK", "" ], [ "O88668-1", "GPHKVSA", "" ], [ "Q8BIQ3-1", "EPRYQCN", "" ], [ "O88662-1", "NNTNCTE", "" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref OMA\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2019-09-12T17:27:04.009637\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniProtKB Xref OMA contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to OMA database accessions/identifiers. The OMA (Orthologous MAtrix) project is a method and database for the inference of orthologs among complete genomes. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - orthologs\n - OMA\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to OMA database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-10090-mus-musculus-2019-05.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-10090-mus-musculus-2019-05.nt\n Name: \n URI: \n Output Subdomain\n Name: mouse_protein_xref_oma.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_oma.csv\n Name: mouse_protein_xref_oma.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_oma.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"16500\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"16486\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_protein_xref_oma.csv" }