{ "bcoid": "GLY_000103", "title": "Mouse UniProtKB Xref MGI", "description": "The Mouse UniprotKB Xref MGI contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_mgi.csv", "filetype": "csv", "categories": { "species": "Mus Musculus", "molecule": "Protein", "tags": "Mgi cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8BH24-1...", "2139220..." ], [ "Q8BH27-1...", "1918264..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8BH24-1", "2139220", "Tm9sf4" ], [ "Q8BH27-1", "1918264", "Megf9" ], [ "Q8BH26-1", "2443862", "Tmem251" ], [ "Q8VF69-1", "3030057", "Olfr223" ], [ "Q9JHR7-1", "96412", "Ide" ], [ "Q8VF63-1", "3030715", "Olfr881" ], [ "Q8VF62-1", "3030711", "Olfr877" ], [ "Q8VF60-1", "3030125", "Olfr291" ], [ "Q8VF66-1", "3030303", "Olfr469" ], [ "Q8VF65-1", "3030304", "Olfr470" ], [ "Q8VF64-1", "3030717", "Olfr883" ], [ "B2RXV4-1", "2444881", "Flvcr1" ], [ "Q3T9W8-1", "3781801", "Gm3625" ], [ "E9Q3P4-1", "1313302", "Cenpf" ], [ "A0A087WRQ3-1", "3651476", "Trav1" ], [ "Q9CXG9-1", "1921266", "Phf19" ], [ "Q07968-1", "88379", "F13b" ], [ "A5H0M4-1", "1918202", "Poteg" ], [ "Q9CXG3-1", "1914668", "Ppil4" ], [ "B1AQ89-1", "3651823", "Gm11555" ], [ "A0A1B0GST9-1", "3780284", "Gm2115" ], [ "B1AQ87-1", "3651811", "Gm14190" ], [ "B1AQ85-1", "1915923", "Krtap4-2" ], [ "A0A1B0GST0-1", "3030400", "Olfr566" ], [ "P01942-1", "96015", "Hba-a1" ], [ "P03899-1", "102499", "mt-Nd3" ], [ "O35153-1", "1913128", "Bet1l" ], [ "P03893-1", "102500", "mt-Nd2" ], [ "Q9QYH9-1", "1355317", "Tnfsf14" ], [ "P52479-1", "894652", "Usp10" ], [ "A0A1Y7VJ58-1", "3779750", "Gm7544" ], [ "Q9QYH6-1", "1930187", "Maged1" ], [ "Q3SXJ3-1", "3031043", "Olfr1209" ], [ "O08537-1", "109392", "Esr2" ], [ "Q08AU9-1", "1916316", "1810010H24Rik" ], [ "Q08AU7-1", "1915765", "Myadml2" ], [ "Q5EBH1-1", "1926375", "Rassf5" ], [ "A0A087WSM5-1", "5579755", "Gm29049" ], [ "Q61409-1", "1333863", "Pde3b" ], [ "A2AVK5-1", "3031068", "Olfr1234" ], [ "Q80YU0-1", "3607711", "Abhd16b" ], [ "Q61400-1", "1347248", "Ceacam10" ], [ "Q61406-1", "2138169", "Cfhr1" ], [ "Q5SRT8-1", "2685723", "Ccnjl" ], [ "P70414-1", "107956", "Slc8a1" ], [ "P70412-1", "1202881", "Cuzd1" ], [ "A0A140LIA7-1", "5588956", "Gm29797" ], [ "P70419-1", "894695", "Galnt3" ], [ "Q9EP78-1", "1891767", "Chst7" ], [ "Q9EP79-1", "2148512", "Vmn1r52" ], [ "Q3URK3-1", "1098693", "Tet1" ], [ "Q9EP72-1", "1920274", "Emc7" ], [ "Q9EP73-1", "1926446", "Cd274" ], [ "Q9EP71-1", "1922896", "Rai14" ], [ "Q9EP75-1", "1927669", "Cyp4f14" ], [ "Q3URK1-1", "1925715", "Ccdc190" ], [ "S4R213-1", "2448566", "Lactbl1" ], [ "P53702-1", "106911", "Hccs" ], [ "Q8R349-1", "1917207", "Cdc16" ], [ "Q8R344-1", "1919904", "Ccdc12" ], [ "O08911-1", "1353438", "Mapk12" ], [ "Q80WC9-1", "2442517", "Aasdh" ], [ "O08912-1", "894693", "Galnt1" ], [ "O08915-1", "109622", "Aip" ], [ "O08914-1", "109609", "Faah" ], [ "O08917-1", "1100500", "Flot1" ], [ "Q80WC3-1", "3648294", "Tnrc18" ], [ "O08918-1", "1095734", "Ccng2" ], [ "Q80WC1-1", "2444236", "Ubn2" ], [ "Q80WC7-1", "2443267", "Agfg2" ], [ "Q9JHY4-1", "2445041", "Wfdc15b" ], [ "Q91ZK4-1", "2153518", "Dmbx1" ], [ "Q91ZK0-1", "2153466", "Tfap2d" ], [ "Q9D4U7-1", "1922592", "4930556J24Rik" ], [ "Q9D4U4-1", "1922521", "H2al3" ], [ "A0A3Q4EGJ1-1", "3647191", "Gm5155" ], [ "P19070-1", "88489", "Cr2" ], [ "Q8BZM0-1", "2385619", "Klhl12" ], [ "Q8BZM1-1", "2141180", "Glmn" ], [ "Q4VC33-1", "1891748", "Maea" ], [ "Q66GT5-1", "1913711", "Ptpmt1" ], [ "P50429-1", "88075", "Arsb" ], [ "Q8BTJ4-1", "2682634", "Enpp4" ], [ "Q99LV7-1", "1919334", "Pigx" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref MGI\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-03-15T12:11:47.098435\n\nModified on\n - 2019-09-12T17:24:57.916451\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniprotKB Xref MGI contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to MGI database accessions/identifiers. MGI is the international database resource for the laboratory mouse, providing integrated genetic, genomic, and biological data to facilitate the study of mouse health and disease. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - gene symbol\n - gene name\n - MGI\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to MGI database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-10090-mus-musculus-2019-05.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-10090-mus-musculus-2019-05.nt\n Name: mouse_protein_idmapping.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_idmapping.csv\n Output Subdomain\n Name: mouse_protein_xref_mgi.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_mgi.csv\n Name: mouse_protein_xref_mgi.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/mouse_protein_xref_mgi.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"22099\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"22476\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"22388\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_protein_xref_mgi.csv" }