{ "bcoid": "GLY_000090", "title": "Human UniProtKB Xref Bgee", "description": "The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_bgee.csv", "filetype": "csv", "categories": { "species": "Homo Sapiens", "molecule": "Protein", "tags": "Bgee", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "ENSG00000163..." ], [ "Q8TBF4-1...", "ENSG00000139..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8TBF5-1", "ENSG00000163964", "Expressed in 193 organ(s), highest expression level in caudate nucleus" ], [ "Q8TBF4-1", "ENSG00000139168", "Expressed in 207 organ(s), highest expression level in oocyte" ], [ "O60507-1", "ENSG00000169902", "Expressed in 195 organ(s), highest expression level in urinary bladder" ], [ "Q9NQ79-1", "ENSG00000095713", "Expressed in 177 organ(s), highest expression level in tendon" ], [ "Q9NVL8-1", "ENSG00000100557", "Expressed in 80 organ(s), highest expression level in kidney" ], [ "Q9NRQ5-1", "ENSG00000166002", "Expressed in 207 organ(s), highest expression level in parotid gland" ], [ "Q8IZF5-1", "ENSG00000173567", "Expressed in 84 organ(s), highest expression level in left adrenal gland" ], [ "P30613-1", "ENSG00000143627", "Expressed in 129 organ(s), highest expression level in liver" ], [ "Q5H9L4-1", "ENSG00000102387", "Expressed in 68 organ(s), highest expression level in right testis" ], [ "Q9BZL4-1", "ENSG00000125503", "Expressed in 199 organ(s), highest expression level in lower esophagus muscularis layer" ], [ "Q9NVL1-1", "ENSG00000158483", "Expressed in 92 organ(s), highest expression level in left coronary artery" ], [ "Q5QJ38-1", "ENSG00000182898", "Expressed in 2 organ(s), highest expression level in skin of abdomen" ], [ "Q9NQ75-1", "ENSG00000087589", "Expressed in 90 organ(s), highest expression level in leukocyte" ], [ "P20930-1", "ENSG00000143631", "Expressed in 105 organ(s), highest expression level in mammalian vulva" ], [ "P20933-1", "ENSG00000038002", "Expressed in 223 organ(s), highest expression level in testis" ], [ "P20936-1", "ENSG00000145715", "Expressed in 233 organ(s), highest expression level in placenta" ], [ "Q8NFX7-1", "ENSG00000168952", "Expressed in 191 organ(s), highest expression level in lateral nuclear group of thalamus" ], [ "Q9UM21-1", "ENSG00000071073", "Expressed in 204 organ(s), highest expression level in colon" ], [ "Q496A3-1", "ENSG00000249481", "Expressed in 36 organ(s), highest expression level in testis" ], [ "P83859-1", "ENSG00000188710", "Expressed in 70 organ(s), highest expression level in urinary bladder" ], [ "P40617-1", "ENSG00000122644", "Expressed in 94 organ(s), highest expression level in right testis" ], [ "Q70EL4-1", "ENSG00000154914", "Expressed in 172 organ(s), highest expression level in amniotic fluid" ], [ "A0A0A0MQW5-1", "ENSG00000142235", "Expressed in 95 organ(s), highest expression level in anterior cingulate cortex" ], [ "Q15573-1", "ENSG00000143498", "Expressed in 166 organ(s), highest expression level in oocyte" ], [ "Q15572-1", "ENSG00000103168", "Expressed in 196 organ(s), highest expression level in myometrium" ], [ "Q9BQP9-1", "ENSG00000131059", "Expressed in 37 organ(s), highest expression level in sperm" ], [ "Q9H999-1", "ENSG00000120137", "Expressed in 231 organ(s), highest expression level in jejunal mucosa" ], [ "P23919-1", "ENSG00000168393", "Expressed in 175 organ(s), highest expression level in liver" ], [ "Q8NHX4-1", "ENSG00000173699", "Expressed in 61 organ(s), highest expression level in testis" ], [ "Q8NHX9-1", "ENSG00000162341", "Expressed in 183 organ(s), highest expression level in amniotic fluid" ], [ "A8MU46-1", "ENSG00000214872", "Expressed in 102 organ(s), highest expression level in biceps brachii" ], [ "Q6ZNW5-1", "ENSG00000183208", "Expressed in 114 organ(s), highest expression level in heart left ventricle" ], [ "Q9NXR8-1", "ENSG00000071243", "Expressed in 230 organ(s), highest expression level in secondary oocyte" ], [ "Q9C0H2-1", "ENSG00000136295", "Expressed in 166 organ(s), highest expression level in right hemisphere of cerebellum" ], [ "Q9C0H5-1", "ENSG00000147799", "Expressed in 145 organ(s), highest expression level in oviduct epithelium" ], [ "Q4VXU2-1", "ENSG00000101104", "Expressed in 161 organ(s), highest expression level in right lobe of thyroid gland" ], [ "Q9C0H6-1", "ENSG00000102271", "Expressed in 111 organ(s), highest expression level in corpus callosum" ], [ "Q9C0H9-5", "ENSG00000277363", "Expressed in 130 organ(s), highest expression level in C1 segment of cervical spinal cord" ], [ "Q9NXR1-2", "ENSG00000072864", "Expressed in 210 organ(s), highest expression level in adrenal gland" ], [ "Q00537-1", "ENSG00000059758", "Expressed in 228 organ(s), highest expression level in corpus callosum" ], [ "Q00536-1", "ENSG00000102225", "Expressed in 219 organ(s), highest expression level in right hemisphere of cerebellum" ], [ "Q9NXR5-1", "ENSG00000088448", "Expressed in 229 organ(s), highest expression level in intestine" ], [ "Q00532-1", "ENSG00000100490", "Expressed in 138 organ(s), highest expression level in endocervix" ], [ "Q96J66-1", "ENSG00000121270", "Expressed in 66 organ(s), highest expression level in right lobe of liver" ], [ "O00244-1", "ENSG00000177556", "Expressed in 225 organ(s), highest expression level in adult mammalian kidney" ], [ "Q9UBM8-1", "ENSG00000182050", "Expressed in 98 organ(s), highest expression level in heart" ], [ "Q9H2V7-1", "ENSG00000169682", "Expressed in 91 organ(s), highest expression level in left adrenal gland" ], [ "O00241-1", "ENSG00000101307", "Expressed in 113 organ(s), highest expression level in blood" ], [ "O00716-1", "ENSG00000112242", "Expressed in 215 organ(s), highest expression level in buccal mucosa cell" ], [ "Q8IX01-1", "ENSG00000064607", "Expressed in 232 organ(s), highest expression level in right testis" ], [ "Q3LI54-1", "ENSG00000206102", "Expressed in 38 organ(s), highest expression level in adenohypophysis" ], [ "Q9UBM1-1", "ENSG00000133027", "Expressed in 190 organ(s), highest expression level in corpus epididymis" ], [ "A8MTA8-1", "ENSG00000215187", "Expressed in 106 organ(s), highest expression level in right adrenal gland" ], [ "Q9UBM4-1", "ENSG00000188770", "Expressed in 62 organ(s), highest expression level in neuron projection bundle connecting eye with brain" ], [ "P24522-1", "ENSG00000116717", "Expressed in 231 organ(s), highest expression level in quadriceps femoris" ], [ "Q13835-1", "ENSG00000081277", "Expressed in 119 organ(s), highest expression level in skin of leg" ], [ "Q7Z3T1-1", "ENSG00000238243", "Expressed in 72 organ(s), highest expression level in blood" ], [ "A0AVF1-1", "ENSG00000105948", "Expressed in 129 organ(s), highest expression level in bronchial epithelial cell" ], [ "P40424-1", "ENSG00000185630", "Expressed in 238 organ(s), highest expression level in myometrium" ], [ "P40425-1", "ENSG00000204304", "Expressed in 221 organ(s), highest expression level in left lobe of thyroid gland" ], [ "P40426-1", "ENSG00000167081", "Expressed in 212 organ(s), highest expression level in intestine" ], [ "Q8IZK6-1", "ENSG00000153898", "Expressed in 132 organ(s), highest expression level in tibia" ], [ "P28566-1", "ENSG00000168830", "Expressed in 61 organ(s), highest expression level in anterior cingulate cortex" ], [ "P51991-1", "ENSG00000170144", "Expressed in 240 organ(s), highest expression level in testis" ], [ "Q13838-1", "ENSG00000198563", "Expressed in 90 organ(s), highest expression level in left lobe of thyroid gland" ], [ "O00337-1", "ENSG00000156222", "Expressed in 79 organ(s), highest expression level in right lobe of liver" ], [ "Q8TDW7-3", "ENSG00000165323", "Expressed in 150 organ(s), highest expression level in primary visual cortex" ], [ "Q5M775-1", "ENSG00000128487", "Expressed in 153 organ(s), highest expression level in corpus callosum" ], [ "Q8WTV0-1", "ENSG00000073060", "Expressed in 191 organ(s), highest expression level in adrenal gland" ], [ "Q9H2I8-1", "ENSG00000148655", "Expressed in 167 organ(s), highest expression level in left adrenal gland" ], [ "A0A075B6S2-1", "ENSG00000243264", "Expressed in 78 organ(s), highest expression level in lymph node" ], [ "P08842-1", "ENSG00000101846", "Expressed in 207 organ(s), highest expression level in chorionic villus" ], [ "P03891-1", "ENSG00000198763", "Expressed in 89 organ(s), highest expression level in left adrenal gland" ], [ "Q5VUR7-1", "ENSG00000276203", "Expressed in 82 organ(s), highest expression level in testis" ], [ "P48960-1", "ENSG00000123146", "Expressed in 172 organ(s), highest expression level in blood" ], [ "P03897-1", "ENSG00000198840", "Expressed in 93 organ(s), highest expression level in muscle layer of sigmoid colon" ], [ "P02768-1", "ENSG00000163631", "Expressed in 114 organ(s), highest expression level in right lobe of liver" ], [ "A0A075B7E8-1", "ENSG00000271178", "Expressed in 59 organ(s), highest expression level in lymph node" ], [ "P20645-1", "ENSG00000003056", "Expressed in 234 organ(s), highest expression level in small intestine Peyer's patch" ], [ "P05386-1", "ENSG00000137818", "Expressed in 112 organ(s), highest expression level in epithelium of bronchus" ], [ "P05387-1", "ENSG00000177600", "Expressed in 238 organ(s), highest expression level in adipose tissue of abdominal region" ], [ "P24863-1", "ENSG00000112237", "Expressed in 236 organ(s), highest expression level in nasal cavity mucosa" ], [ "P08559-1", "ENSG00000131828", "Expressed in 232 organ(s), highest expression level in heart left ventricle" ], [ "P02760-1", "ENSG00000106927", "Expressed in 93 organ(s), highest expression level in liver" ] ] }, "readme": "Name\n - Human UniProtKB Xref Bgee\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2019-09-12T15:27:04.556559\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref Bgee dataset contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n Keywords\n - gene expression\n - Bgee\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-9606-homo-sapiens-2019-05.nt\n URI: https://data.glygen.org/ln2wwwdata/source/uniprot-proteome-9606-homo-sapiens-2019-05.nt\n Name: human_protein_idmapping.csv\n URI: https://data.glygen.org/ln2wwwdata/reviewed/human_protein_idmapping.csv\n Output Subdomain\n Name: human_protein_xref_bgee.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_bgee.csv\n Name: human_protein_xref_bgee.stat.csv\n URI: http://data.glygen.org/ln2wwwdata/reviewed/human_protein_xref_bgee.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"19449\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"11856\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"19289\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_bgee.csv" }