{ "bcoid": "GLY_000275", "title": "Rat Protein Information (NCBI RefSeq)", "description": "The Rat NCBI RefSeq Protein Information dataset contains rat [taxid:10116] protein information such as ...", "filename": "rat_protein_info_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus Norvegicus", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D4A1B7-1...", "NP_001099375..." ], [ "D3ZF53-1...", "NP_001103103..." ] ], "headers": [ "uniprotkb_ca...", "p_refseq_ac_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "p_refseq_ac_best_match" }, { "type": "string", "label": "refseq_protein_name" }, { "type": "string", "label": "refseq_protein_length" }, { "type": "string", "label": "refseq_protein_summary" } ], [ "D4A1B7-1", "NP_001099375.1", "developmental pluripotency associated 1 precursor", "118", "" ], [ "D3ZF53-1", "NP_001103103.1", "uncharacterized protein LOC691277 precursor", "235", "" ], [ "Q1AHR4-1", "NP_001129373.1", "uncharacterized protein C20orf144 homolog", "197", "" ], [ "D3ZY74-1", "NP_001102721.1", "FANCD2 opposite strand protein", "178", "" ], [ "A0A0G2JVL5-1", "NP_001128020.1", "UPF0600 protein C5orf51 homolog", "251", "" ], [ "F1LST7-1", "NP_001163899.1", "coiled-coil domain-containing protein 185", "621", "" ], [ "A0A0G2K9F8-1", "NP_001100957.1", "zinc finger protein 112", "893", "" ], [ "M0RB04-1", "NP_001014072.2", "protein FAM110A isoform 2", "326", "" ], [ "B0BN67-1", "NP_001102620.1", "protein FAM181B", "419", "" ], [ "D3ZSF0-1", "NP_001128023.1", "protein FAM217B", "445", "" ], [ "D3ZVY5-1", "NP_001099513.1", "leukemia-associated protein 7", "212", "" ], [ "B0BNK2-1", "NP_001102763.1", "uncharacterized protein C11orf71 homolog", "117", "" ], [ "M0RBN5-1", "NP_001000128.1", "olfactory receptor Olr39", "329", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "M0R9T8-1", "NP_001000225.1", "olfactory receptor Olr281", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K620-1", "NP_001000292.1", "olfactory receptor Olr458", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A7V3-1", "NP_001000841.1", "olfactory receptor Olr1614", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K6G0-1", "NP_001000732.1", "olfactory receptor Olr271", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZDB8-1", "NP_001000910.1", "olfactory receptor Olr1598", "310", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZHS4-1", "NP_001000113.1", "olfactory receptor Olr8", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K8X6-1", "NP_001000031.1", "olfactory receptor Olr1499", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K4M2-1", "NP_001000665.1", "olfactory receptor Olr566", "314", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K2Y6-1", "NP_001000030.1", "olfactory receptor Olr1498", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K3R9-1", "NP_001000257.1", "olfactory receptor Olr357", "315", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2JWT8-1", "NP_001000691.1", "olfactory receptor Olr29", "335", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2K9X4-1", "NP_001001353.1", "olfactory receptor Olr1536", "309", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A3G7-1", "NP_001138474.1", "keratin associated protein 7-1", "87", "" ], [ "D3ZVQ4-1", "NP_001000293.1", "olfactory receptor Olr459", "309", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZAM2-1", "NP_001000097.1", "olfactory receptor Olr1620", "324", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D3ZVV4-1", "NP_001000768.1", "olfactory receptor Olr7", "313", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "D4A2Y4-1", "NP_001000521.1", "olfactory receptor Olr1619", "311", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "M0R7G6-1", "NP_001000719.1", "olfactory receptor Olr1488", "312", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "A0A0G2JVQ9-1", "NP_001000619.1", "olfactory receptor Olr727", "309", "Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]. " ], [ "F1LZR0-1", "NP_001182541.1", "keratin associated protein", "66", "" ], [ "M0RA52-1", "NP_001178597.1", "transmembrane protein 185B", "350", "" ], [ "B5DEL0-1", "NP_001099997.1", "testis specific protein, Y-linked 26", "334", "" ], [ "D3ZZ26-1", "NP_001103034.1", "protein phosphatase 1 regulatory subunit 3D", "279", "" ], [ "D3ZXZ1-1", "NP_001008879.2", "zinc finger protein 292", "2706", "zinc finger protein that interacts with POU domain transcription factor Pit-1 to activate expression from the growth hormone promoter [RGD, Feb 2006]. " ], [ "D4AAF1-1", "NP_001128486.1", "ankyrin repeat domain-containing protein 39", "183", "" ], [ "A0A0G2K3I2-1", "NP_001258147.1", "interferon alpha family, gene 2 precursor", "192", "" ], [ "Q6AY07-1", "NP_001013965.1", "fructose-bisphosphate aldolase", "364", "" ], [ "D3ZWC2-1", "NP_001101262.1", "palate lung and nasal carcinoma-like protein precursor", "270", "" ], [ "D4A504-1", "NP_001099806.1", "membrane-spanning 4-domains subfamily A member 10", "232", "" ], [ "M0R4Q5-1", "NP_001012045.2", "kelch repeat and BTB domain-containing protein 6", "489", "" ], [ "D3ZA00-1", "NP_001178772.1", "V-type proton ATPase subunit S1-like protein precursor", "336", "" ], [ "F1LWK5-1", "NP_001258081.1", "progestin and adipoQ receptor family member 9", "373", "" ], [ "M0R5M5-1", "NP_001101592.1", "jerky protein homolog-like", "524", "" ], [ "Q5R1M6-1", "NP_001009505.1", "follicular dendritic cell secreted peptide precursor", "81", "" ], [ "A0A0G2K360-1", "XP_006223692.1", "testis-expressed sequence 40 protein isoform X3", "183", "" ], [ "D4AAV8-1", "XP_017443405.1", "coiled-coil domain-containing protein 106 isoform X4", "339", "" ], [ "F1LTM7-1", "XP_008772798.2", "protein FAM189A1 isoform X2", "515", "" ], [ "A0A1W2Q6D6-1", "XP_008772791.2", "leucine zipper protein 2 isoform X3", "345", "" ], [ "F1LYE2-1", "XP_017444500.1", "androglobin isoform X2", "1561", "" ], [ "F1LVF4-1", "XP_003752384.1", "protoheme IX farnesyltransferase, mitochondrial isoform X2", "442", "" ], [ "F1LQX4-1", "XP_006220759.1", "rho GTPase-activating protein 44 isoform X1", "814", "" ], [ "F1LVF5-1", "XP_006221830.1", "coiled-coil domain-containing protein 149 isoform X2", "535", "" ], [ "D3ZSZ6-1", "XP_003752880.2", "diacylglycerol kinase eta isoform X5", "1210", "" ], [ "D4A3K3-1", "XP_008765590.1", "disks large homolog 5 isoform X3", "1815", "" ], [ "D4A4E5-1", "XP_008769841.1", "serine-rich coiled-coil domain-containing protein 2 isoform X3", "836", "" ], [ "P0DP76-1", "XP_008770257.1", "apelin receptor early endogenous ligand", "54", "" ], [ "F1LV46-1", "XP_003752968.1", "indoleamine 2,3-dioxygenase 2 isoform X2", "405", "" ], [ "D3ZCD3-1", "XP_017443231.1", "isopentenyl-diphosphate delta-isomerase 2-like isoform X2", "227", "" ], [ "D4AE17-1", "XP_008773658.1", "mitogen-activated protein kinase kinase kinase MLT isoform X3", "453", "" ], [ "D4A039-1", "XP_003753848.2", "double zinc ribbon and ankyrin repeat-containing protein 1 isoform X6", "757", "" ], [ "A0A0G2KA88-1", "XP_001067659.3", "protein SOGA1 isoform X2", "1452", "" ], [ "Q5J3M7-1", "XP_017458221.1", "putative vomeronasal receptor-like protein 4 isoform X2", "310", "" ], [ "P85118-1", "XP_006225037.1", "probable N-acetyltransferase CML2", "226", "" ], [ "A0A0G2K2B5-1", "XP_017458444.1", "aspartyl/asparaginyl beta-hydroxylase isoform X15", "789", "" ], [ "Q3MHU3-1", "XP_001072421.2", "putative ATP-dependent RNA helicase TDRD9 isoform X5", "1384", "" ], [ "F1M311-1", "XP_006226001.1", "BTB/POZ domain-containing protein 2 isoform X2", "377", "" ], [ "D4A5D4-1", "XP_002727308.2", "microtubule cross-linking factor 1 isoform X3", "1611", "" ], [ "D3ZP99-1", "XP_008771925.1", "probable protein phosphatase 1N isoform X1", "367", "" ], [ "M0R621-1", "XP_003752254.1", "uncharacterized protein C18orf25 homolog", "245", "" ], [ "D3ZH27-1", "XP_003752259.1", "bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]", "147", "" ], [ "M0R547-1", "XP_003752261.1", "apolipoprotein C-I", "88", "" ], [ "M0R635-1", "XP_003752314.1", "N-alpha-acetyltransferase 11-like", "220", "" ], [ "M0R6N2-1", "XP_003752325.1", "mitochondrial amidoxime reducing component 2", "338", "" ], [ "M0RAY5-1", "XP_003752327.1", "transmembrane protein 115", "350", "" ], [ "A0A0G2JWR5-1", "XP_008772036.1", "TATA-binding protein-associated factor 2N-like", "560", "" ], [ "F2Z3T7-1", "XP_008772040.1", "isochorismatase domain-containing protein 1", "297", "" ], [ "A0A096MIU6-1", "XP_008772126.1", "low affinity immunoglobulin gamma Fc region receptor III-like", "267", "" ], [ "A0A0G2K893-1", "XP_003752275.1", "ETS-related transcription factor Elf-5 isoform X1", "255", "" ], [ "M0RDR7-1", "XP_003752277.1", "glutamine--tRNA ligase", "775", "" ], [ "A0A0G2JY59-1", "XP_008756812.1", "zinc finger C2HC domain-containing protein 1B isoform X1", "230", "" ], [ "Q2ABP3-1", "XP_006229899.1", "post-GPI attachment to proteins factor 2 isoform X7", "254", "" ] ] }, "readme": "Name\n - Rat Protein Information (NCBI RefSeq)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-09-06T14:06:39.001496\n\nModified on\n - 2019-09-12T17:13:43.747679\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Rat NCBI RefSeq Protein Information dataset contains rat [taxid:10116] protein information such as protein accession, name, length and protein function summmary from NCBI RefSeq database. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein information\n - protein length\n - NCBI RefSeq\n - protein summary\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the accession, length, protein summary and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: refseq_protein_all_10116.gpff\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/refseq_protein_all_10116.gpff\n Output Subdomain\n Name: rat_protein_info_refseq.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/rat_protein_info_refseq.csv\n Name: rat_protein_info_refseq.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/rat_protein_info_refseq.stat.csv\n\nFields\n Name: \"refseq_protein_summary\"\n Description: \"Function of the protein in NCBI RefSeq database\"\n Unique Values: \"3408\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"11022\"\n Name: \"p_refseq_ac_best_match\"\n Description: \"Best match NCBI RefSeq protein accession to UniProtKB canonical accession\"\n Unique Values: \"11022\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"10999\"\n Name: \"refseq_protein_length\"\n Description: \"Length of the protein in NCBI RefSeq database\"\n Unique Values: \"1612\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/rat_protein_info_refseq.csv" }