{ "bcoid": "GLY_000145", "title": "Mouse GlyTouCan Masterlist", "description": "The dataset contains a list of GlyTouCan accessions considered to be the GlyGen Mouse GlyTouCan Master ...", "filename": "mouse_glycan_accession_sources.csv", "filetype": "csv", "categories": { "status": "Reviewed", "molecule": "Glycan", "species": "Mus musculus", "tags": "Master List", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00031MO...", "category_I..." ], [ "G00033MO...", "category_I..." ] ], "headers": [ "glytoucan_ac...", "source..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "source" } ], [ "G00031MO", "category_I" ], [ "G00033MO", "category_I" ], [ "G00048MO", "category_I" ], [ "G00050MO", "category_I" ], [ "G00051MO", "category_I" ], [ "G00052MO", "category_I" ], [ "G00053MO", "category_I" ], [ "G00054MO", "category_I" ], [ "G00058MO", "category_I" ], [ "G00059MO", "category_I" ], [ "G00061MO", "category_I" ], [ "G00395TQ", "category_I" ], [ "G00503EE", "category_I" ], [ "G00659GQ", "category_I" ], [ "G00672PE", "category_I" ], [ "G00883ZT", "category_I" ], [ "G00978TF", "category_I" ], [ "G00995HW", "category_I" ], [ "G01223AA", "category_I" ], [ "G01361CV", "category_I" ], [ "G01614ZM", "category_I" ], [ "G01767JJ", "category_I" ], [ "G02251YG", "category_I" ], [ "G02441OB", "category_I" ], [ "G02456AL", "category_I" ], [ "G02657AK", "category_I" ], [ "G03067VG", "category_I" ], [ "G03246MZ", "category_I" ], [ "G03277YI", "category_I" ], [ "G03361KC", "category_I" ], [ "G03499BP", "category_I" ], [ "G03506YN", "category_I" ], [ "G03584KV", "category_I" ], [ "G03652TR", "category_I" ], [ "G03670RH", "category_I" ], [ "G04616ST", "category_I" ], [ "G04690JX", "category_I" ], [ "G04855ZO", "category_I" ], [ "G05187WH", "category_I" ], [ "G05384WR", "category_I" ], [ "G05395FV", "category_I" ], [ "G05478GN", "category_I" ], [ "G05979RR", "category_I" ], [ "G06239NA", "category_I" ], [ "G06367TC", "category_I" ], [ "G06550JR", "category_I" ], [ "G06658RN", "category_I" ], [ "G06673TD", "category_I" ], [ "G06830II", "category_I" ], [ "G07380TS", "category_I" ], [ "G07394RV", "category_I" ], [ "G07429FY", "category_I" ], [ "G07490EK", "category_I" ], [ "G07682PQ", "category_I" ], [ "G08111FJ", "category_I" ], [ "G08161JQ", "category_I" ], [ "G08371CD", "category_I" ], [ "G08679LR", "category_I" ], [ "G09362VG", "category_I" ], [ "G09416DG", "category_I" ], [ "G09546QO", "category_I" ], [ "G09552LA", "category_I" ], [ "G09568JT", "category_I" ], [ "G09675DY", "category_I" ], [ "G10179FS", "category_I" ], [ "G10203DW", "category_I" ], [ "G10219AA", "category_I" ], [ "G10503MP", "category_I" ], [ "G10604KJ", "category_I" ], [ "G10666VQ", "category_I" ], [ "G10712FZ", "category_I" ], [ "G10805TH", "category_I" ], [ "G10844WB", "category_I" ], [ "G10995NB", "category_I" ], [ "G11260XI", "category_I" ], [ "G11457RF", "category_I" ], [ "G11460AB", "category_I" ], [ "G11509RN", "category_I" ], [ "G11571JL", "category_I" ], [ "G12323AY", "category_I" ], [ "G12398HZ", "category_I" ], [ "G12593TX", "category_I" ], [ "G12861CT", "category_I" ], [ "G13131FE", "category_I" ] ] }, "readme": "Name\n - Mouse GlyTouCan Masterlist\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-07-16T12:26:58.392765\n\nModified on\n - 2019-09-12T10:51:14.036030\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu]\n\nAuthors\n - Robel Kahsay [rykahsay@email.gwu.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset contains a list of GlyTouCan accessions considered to be the GlyGen Mouse GlyTouCan Master list. The inclusion criteria are provided by a category number associated with the glycan (GlyTouCan Accession). category_ I: The Glycan has a mouse [taxid:10090] (Mus musculus) species annotation from GlyTouCan and/or UniCarbKB database. category_II: The Glycan is associated to a Mouse [taxid:10090] (Mus musculus) biosynthetic enzyme. category_III: The Glycan is known to be attached to a Mouse [taxid:10090] (Mus musculus) protein. category_IV: The glycan is a motif of the glycan from categories I, II, III.\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Master List\n\n Pipeline Steps\n - Step-0: The output file was generated by appending the GlyTouCan accessions from 4 input files. The source column represents the category number based on the source input files: category_I : (Input file 1; where \"Taxid:9606\") The Glycan has aMouse [taxid:10090] (Mus musculus) species annotation from GlyTouCan and/UniCarbKB database. category_II: (Input file 2) The Glycan is synthesized by a Mouse [taxid:10090] (Mus musculus) protein. category_III: (Input file 3) The Glycan is known to be attached to a Mouse [taxid:10090] (Mus musculus) protein. category_IV: (Input file 4) The glycan is a motif of the glycan from categories I, II, III.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: taxa.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/taxa.tsv\n Name: mouse_glycan_enzyme.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_enzyme.csv\n Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n Name: allmotif.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/allmotif.tsv\n Output Subdomain\n Name: mouse_glycan_accession_sources.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_accession_sources.csv\n Name: mouse_glycan_accession_sources.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_accession_sources.stat.csv\n\nFields\n Name: \"source\"\n Description: \"The source database for the data\"\n Unique Values: \"4\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"2116\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_accession_sources.csv" }