{ "bcoid": "GLY_000144", "title": "Human GlyTouCan Masterlist", "description": "The dataset contains a list of GlyTouCan accessions considered to be the GlyGen Human GlyTouCan Master ...", "filename": "human_glycan_accession_sources.csv", "filetype": "csv", "categories": { "status": "Reviewed", "molecule": "Glycan", "species": "Homo sapiens", "tags": "Master List", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00017MO...", "category_I..." ], [ "G00025AJ...", "category_I..." ] ], "headers": [ "glytoucan_ac...", "source..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "source" } ], [ "G00017MO", "category_I" ], [ "G00025AJ", "category_I" ], [ "G00031MO", "category_I" ], [ "G00033MO", "category_I" ], [ "G00034MO", "category_I" ], [ "G00035MO", "category_I" ], [ "G00036MO", "category_I" ], [ "G00037MO", "category_I" ], [ "G00038MO", "category_I" ], [ "G00039MO", "category_I" ], [ "G00040MO", "category_I" ], [ "G00042MO", "category_I" ], [ "G00044MO", "category_I" ], [ "G00047MO", "category_I" ], [ "G00048MO", "category_I" ], [ "G00049MO", "category_I" ], [ "G00050MO", "category_I" ], [ "G00051MO", "category_I" ], [ "G00052MO", "category_I" ], [ "G00053MO", "category_I" ], [ "G00054MO", "category_I" ], [ "G00055MO", "category_I" ], [ "G00056MO", "category_I" ], [ "G00057MO", "category_I" ], [ "G00058MO", "category_I" ], [ "G00059MO", "category_I" ], [ "G00060BT", "category_I" ], [ "G00061MO", "category_I" ], [ "G00063MO", "category_I" ], [ "G00065MO", "category_I" ], [ "G00066MO", "category_I" ], [ "G00068MO", "category_I" ], [ "G00069MO", "category_I" ], [ "G00070MO", "category_I" ], [ "G00076PK", "category_I" ], [ "G00089VH", "category_I" ], [ "G00112IO", "category_I" ], [ "G00176HZ", "category_I" ], [ "G00212ZT", "category_I" ], [ "G00227RN", "category_I" ], [ "G00279YF", "category_I" ], [ "G00281HB", "category_I" ], [ "G00287UD", "category_I" ], [ "G00362UY", "category_I" ], [ "G00370EI", "category_I" ], [ "G00395TQ", "category_I" ], [ "G00413UF", "category_I" ], [ "G00428HK", "category_I" ], [ "G00430ZK", "category_I" ], [ "G00432WV", "category_I" ], [ "G00463XD", "category_I" ], [ "G00470UO", "category_I" ], [ "G00482HJ", "category_I" ], [ "G00492CQ", "category_I" ], [ "G00504PZ", "category_I" ], [ "G00547ZN", "category_I" ], [ "G00551JZ", "category_I" ], [ "G00553AN", "category_I" ], [ "G00582VL", "category_I" ], [ "G00606LX", "category_I" ], [ "G00619DD", "category_I" ], [ "G00633GI", "category_I" ], [ "G00646SN", "category_I" ], [ "G00666EC", "category_I" ], [ "G00675GF", "category_I" ], [ "G00688TE", "category_I" ], [ "G00695JO", "category_I" ], [ "G00705XW", "category_I" ], [ "G00706AL", "category_I" ], [ "G00706QN", "category_I" ], [ "G00711QT", "category_I" ], [ "G00743WU", "category_I" ], [ "G00797ZX", "category_I" ], [ "G00800WJ", "category_I" ], [ "G00830CM", "category_I" ], [ "G00851XQ", "category_I" ], [ "G00883ZT", "category_I" ], [ "G00891GP", "category_I" ], [ "G00901NZ", "category_I" ], [ "G00910WD", "category_I" ], [ "G00978GW", "category_I" ], [ "G00978TF", "category_I" ], [ "G00979XR", "category_I" ], [ "G00986YT", "category_I" ] ] }, "readme": "Name\n - Human GlyTouCan Masterlist\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-07-16T12:03:58.614740\n\nModified on\n - 2019-09-12T10:42:24.261888\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu]\n\nAuthors\n - Robel Kahsay [rykahsay@email.gwu.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset contains a list of GlyTouCan accessions considered to be the GlyGen Human GlyTouCan Master list. The inclusion criteria are provided by a category number associated with the glycan (GlyTouCan Accession). category_I: The Glycan has a Human [taxid:9606] (Homo sapiens) species annotation from GlyTouCan and/or UniCarbKB database. category_II: The Glycan is associated to a Human [taxid:9606] (Homo sapiens) bio-synthetic enzyme. category_III: The Glycan is known to be attached to a Human [taxid:9606] (Homo sapiens) protein. category_IV: The glycan is a motif of the glycan from categories I, II, III.\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Master List\n\n Pipeline Steps\n - Step-0: The output file was generated by appending the GlyTouCan accessions from 4 input files. The source column represents the category number based on the source input files: category_I : (Input file 1; where \"Taxid:9606\") The Glycan has a Human [taxid:9606] (Homo sapiens) species annotation from GlyTouCan and/UniCarbKB database. category_II: (Input file 2) The Glycan is synthesized by a Human [taxid:9606] (Homo sapiens) protein. category_III: (Input file 3) The Glycan is known to be attached to a Human [taxid:9606] (Homo sapiens) protein. category_IV: (Input file 4) The glycan is a motif of the glycan from categories I, II, III.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: taxa.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/taxa.tsv\n Name: human_glycan_enzyme.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_enzyme.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: allmotif.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/allmotif.tsv\n Output Subdomain\n Name: human_glycan_accession_sources.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_accession_sources.csv\n Name: human_glycan_accession_sources.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_accession_sources.stat.csv\n\nFields\n Name: \"source\"\n Description: \"The source database for the data\"\n Unique Values: \"4\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"5037\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_accession_sources.csv" }