{ "bcoid": "GLY_000117", "title": "Human UniProtKB Xref PANTHER", "description": "The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_panther.csv", "filetype": "csv", "categories": { "species": "Homo Sapiens", "molecule": "Protein", "tags": "Panther cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "PTHR28650..." ], [ "O60507-1...", "PTHR12788..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8TBF5-1", "PTHR28650", "PTHR28650" ], [ "O60507-1", "PTHR12788", "PTHR12788" ], [ "Q9NQ79-1", "PTHR16026:SF4", "PTHR16026:SF4" ], [ "Q9NVL8-1", "PTHR16065", "PTHR16065" ], [ "Q9NRQ5-1", "PTHR34644", "PTHR34644" ], [ "P30613-1", "PTHR11817", "PTHR11817" ], [ "Q5H9L4-1", "PTHR12228", "PTHR12228" ], [ "Q9BZL4-1", "PTHR24179:SF27", "PTHR24179:SF27" ], [ "Q9NQ75-1", "PTHR10654", "PTHR10654" ], [ "Q9NQ75-1", "PTHR10654:SF19", "PTHR10654:SF19" ], [ "P20933-1", "PTHR10188", "PTHR10188" ], [ "P20936-1", "PTHR10194:SF19", "PTHR10194:SF19" ], [ "P20936-1", "PTHR10194", "PTHR10194" ], [ "A0A1W2PQ27-1", "PTHR20383", "PTHR20383" ], [ "Q9UM21-1", "PTHR12062", "PTHR12062" ], [ "Q496A3-1", "PTHR35845", "PTHR35845" ], [ "P83859-1", "PTHR36476", "PTHR36476" ], [ "Q15572-1", "PTHR15319", "PTHR15319" ], [ "Q9BQP9-1", "PTHR47736", "PTHR47736" ], [ "Q8NHX4-1", "PTHR22234", "PTHR22234" ], [ "Q8NHX9-1", "PTHR46768", "PTHR46768" ], [ "Q6ZNW5-1", "PTHR20884", "PTHR20884" ], [ "Q9NXR8-1", "PTHR10333", "PTHR10333" ], [ "Q9C0H2-1", "PTHR12424", "PTHR12424" ], [ "Q9C0H9-5", "PTHR22741:SF5", "PTHR22741:SF5" ], [ "Q9NXR1-2", "PTHR10921", "PTHR10921" ], [ "Q96J66-1", "PTHR24223:SF168", "PTHR24223:SF168" ], [ "Q9UBM8-1", "PTHR12062", "PTHR12062" ], [ "O00716-1", "PTHR12081", "PTHR12081" ], [ "Q8IX01-1", "PTHR23340", "PTHR23340" ], [ "Q9UBM1-1", "PTHR15458", "PTHR15458" ], [ "P24522-1", "PTHR10411", "PTHR10411" ], [ "Q13835-1", "PTHR10372:SF3", "PTHR10372:SF3" ], [ "Q13835-1", "PTHR10372", "PTHR10372" ], [ "A0AVF1-1", "PTHR14781", "PTHR14781" ], [ "Q8IZK6-1", "PTHR12127", "PTHR12127" ], [ "P28566-1", "PTHR24247:SF33", "PTHR24247:SF33" ], [ "O00337-1", "PTHR10590", "PTHR10590" ], [ "O00337-1", "PTHR10590:SF16", "PTHR10590:SF16" ], [ "Q8WTV0-1", "PTHR11923", "PTHR11923" ], [ "P03897-1", "PTHR11058", "PTHR11058" ], [ "P02768-1", "PTHR11385", "PTHR11385" ], [ "P24863-1", "PTHR10026:SF7", "PTHR10026:SF7" ], [ "P02760-1", "PTHR46676", "PTHR46676" ], [ "A0A1W2PPV4-1", "PTHR10217:SF530", "PTHR10217:SF530" ], [ "P02766-1", "PTHR10395", "PTHR10395" ], [ "P02766-1", "PTHR10395:SF12", "PTHR10395:SF12" ], [ "Q7L266-1", "PTHR10188", "PTHR10188" ], [ "P18075-1", "PTHR11848", "PTHR11848" ], [ "Q9UJ70-1", "PTHR12862", "PTHR12862" ], [ "A0A087WVI8-1", "PTHR47230", "PTHR47230" ], [ "O60508-1", "PTHR43979", "PTHR43979" ], [ "Q86WA9-1", "PTHR11814", "PTHR11814" ], [ "Q86WA8-1", "PTHR10046", "PTHR10046" ], [ "P60153-1", "PTHR11437:SF14", "PTHR11437:SF14" ], [ "P60153-1", "PTHR11437", "PTHR11437" ], [ "Q6ZTI6-1", "PTHR31848", "PTHR31848" ], [ "O15258-1", "PTHR10743", "PTHR10743" ], [ "O15259-1", "PTHR15176:SF1", "PTHR15176:SF1" ], [ "P41180-1", "PTHR24061", "PTHR24061" ], [ "P41181-1", "PTHR19139", "PTHR19139" ], [ "P07900-1", "PTHR11528", "PTHR11528" ], [ "Q5T5X7-1", "PTHR28665", "PTHR28665" ], [ "H0YL14-1", "PTHR18884:SF108", "PTHR18884:SF108" ], [ "Q7RTW8-1", "PTHR23412", "PTHR23412" ], [ "Q7RTW8-1", "PTHR23412:SF18", "PTHR23412:SF18" ], [ "P12074-1", "PTHR11504", "PTHR11504" ], [ "Q01118-1", "PTHR10037:SF14", "PTHR10037:SF14" ], [ "Q96CS2-1", "PTHR31570", "PTHR31570" ], [ "Q9P219-1", "PTHR18947:SF31", "PTHR18947:SF31" ], [ "Q14406-1", "PTHR11417", "PTHR11417" ], [ "Q5W111-1", "PTHR20951", "PTHR20951" ], [ "Q96CS7-1", "PTHR14309", "PTHR14309" ], [ "Q96CS7-1", "PTHR14309:SF8", "PTHR14309:SF8" ], [ "P62807-1", "PTHR23428", "PTHR23428" ], [ "Q9UK17-1", "PTHR11537", "PTHR11537" ], [ "Q9BVC3-1", "PTHR13395", "PTHR13395" ], [ "Q9P212-1", "PTHR10336:SF6", "PTHR10336:SF6" ], [ "Q9P212-1", "PTHR10336", "PTHR10336" ], [ "Q92831-1", "PTHR45750", "PTHR45750" ], [ "Q92830-1", "PTHR45750", "PTHR45750" ], [ "Q92837-1", "PTHR35154", "PTHR35154" ], [ "Q9H3M9-1", "PTHR14159", "PTHR14159" ], [ "P21452-1", "PTHR46925:SF3", "PTHR46925:SF3" ] ] }, "readme": "Name\n - Human UniProtKB Xref PANTHER\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-03-15T15:04:33.347577\n\nModified on\n - 2019-09-12T15:38:35.821383\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref PANTHER contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to PANTHER database accessions/identifiers. The PANTHER classification system is a large curated biological database of gene/protein families and their functionally related subfamilies that can be used to classify and identify the function of gene products. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein family\n - PANTHER\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to PANTHER database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-9606-homo-sapiens-2019-05.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/uniprot-proteome-9606-homo-sapiens-2019-05.nt\n Name: human_protein_idmapping.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_idmapping.csv\n Output Subdomain\n Name: human_protein_xref_panther.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_panther.csv\n Name: human_protein_xref_panther.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_panther.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"9286\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"6493\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"6493\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_panther.csv" }