{ "bcoid": "GLY_000108", "title": "Human UniProtKB Xref KEGG PATHWAY", "description": "The Human UniProtKB Xref KEGG PATHWAY contains human [taxid:9606] UniProtKB canonical accessions cross-referenced ...", "filename": "human_protein_xref_kegg.csv", "filetype": "csv", "categories": { "species": "Homo Sapiens", "molecule": "Protein", "tags": "Kegg Pathway cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q8TBF5-1...", "hsa:54965..." ], [ "Q8TBF4-1...", "hsa:85437..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "Q8TBF5-1", "hsa:54965", "" ], [ "Q8TBF4-1", "hsa:85437", "" ], [ "O60507-1", "hsa:8460", "" ], [ "Q9NQ79-1", "hsa:55118", "" ], [ "Q9NVL8-1", "hsa:55195", "" ], [ "Q9NRQ5-1", "hsa:56935", "" ], [ "Q8IZF5-1", "hsa:165082", "" ], [ "P30613-1", "hsa:5313", "" ], [ "Q5H9L4-1", "hsa:54457", "" ], [ "Q9BZL4-1", "hsa:54776", "" ], [ "Q9NVL1-1", "hsa:55199", "" ], [ "Q5QJ38-1", "hsa:126637", "" ], [ "Q9NQ75-1", "hsa:57091", "" ], [ "P20930-1", "hsa:2312", "" ], [ "P20933-1", "hsa:175", "" ], [ "P20936-1", "hsa:5921", "" ], [ "Q8NFX7-1", "hsa:29091", "" ], [ "Q9UM21-1", "hsa:11320", "" ], [ "Q496A3-1", "hsa:221409", "" ], [ "P83859-1", "hsa:347148", "" ], [ "P40617-1", "hsa:10124", "" ], [ "Q70EL4-1", "hsa:124739", "" ], [ "A0A0A0MQW5-1", "hsa:114783", "" ], [ "Q15573-1", "hsa:9015", "" ], [ "Q15572-1", "hsa:9013", "" ], [ "Q9BQP9-1", "hsa:128861", "" ], [ "Q9H999-1", "hsa:79646", "" ], [ "P23919-1", "hsa:1841", "" ], [ "Q8NHX4-1", "hsa:130560", "" ], [ "Q8NHX9-1", "hsa:219931", "" ], [ "A8MU46-1", "hsa:219537", "" ], [ "Q6ZNW5-1", "hsa:390637", "" ], [ "Q9NXR8-1", "hsa:54556", "" ], [ "Q9C0H2-1", "hsa:80727", "" ], [ "Q9C0H5-1", "hsa:80728", "" ], [ "Q4VXU2-1", "hsa:80336", "" ], [ "Q9C0H6-1", "hsa:56062", "" ], [ "Q9C0H9-5", "hsa:80725", "" ], [ "Q9NXR1-2", "hsa:54820", "" ], [ "Q00537-1", "hsa:5128", "" ], [ "Q00536-1", "hsa:5127", "" ], [ "Q9NXR5-1", "hsa:55608", "" ], [ "Q00532-1", "hsa:8814", "" ], [ "Q96J66-1", "hsa:85320", "" ], [ "O00244-1", "hsa:475", "" ], [ "Q9UBM8-1", "hsa:25834", "" ], [ "Q9H2V7-1", "hsa:83985", "" ], [ "O00716-1", "hsa:1871", "" ], [ "Q8IX01-1", "hsa:10147", "" ], [ "Q3LI54-1", "hsa:728299", "" ], [ "Q9UBM1-1", "hsa:10400", "" ], [ "A8MTA8-1", "hsa:730112", "" ], [ "Q9UBM4-1", "hsa:26254", "" ], [ "P24522-1", "hsa:1647", "" ], [ "Q13835-1", "hsa:5317", "" ], [ "Q7Z3T1-1", "hsa:343171", "" ], [ "A0AVF1-1", "hsa:79989", "" ], [ "P40424-1", "hsa:5087", "" ], [ "P40425-1", "hsa:5089", "" ], [ "P40426-1", "hsa:5090", "" ], [ "Q8IZK6-1", "hsa:255231", "" ], [ "P28566-1", "hsa:3354", "" ], [ "P51991-1", "hsa:220988", "" ], [ "Q13838-1", "hsa:7919", "" ], [ "O00337-1", "hsa:9154", "" ], [ "Q8TDW7-3", "hsa:120114", "" ], [ "Q5M775-1", "hsa:92521", "" ], [ "Q8WTV0-1", "hsa:949", "" ], [ "Q9H2I8-1", "hsa:83938", "" ], [ "P08842-1", "hsa:412", "" ], [ "P03891-1", "hsa:4536", "" ], [ "Q5VUR7-1", "hsa:441425", "" ], [ "P48960-1", "hsa:976", "" ], [ "P03897-1", "hsa:4537", "" ], [ "P02768-1", "hsa:213", "" ], [ "P20645-1", "hsa:4074", "" ], [ "P05386-1", "hsa:6176", "" ], [ "P05387-1", "hsa:6181", "" ], [ "P24863-1", "hsa:892", "" ], [ "P08559-1", "hsa:5160", "" ], [ "P02760-1", "hsa:259", "" ], [ "P02763-1", "hsa:5004", "" ], [ "P02765-1", "hsa:197", "" ], [ "P02766-1", "hsa:7276", "" ] ] }, "readme": "Name\n - Human UniProtKB Xref KEGG PATHWAY\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-01-23T17:21:05.959744\n\nModified on\n - 2019-09-12T15:35:53.304165\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human UniProtKB Xref KEGG PATHWAY contains human [taxid:9606] UniProtKB canonical accessions cross-referenced to KEGG PATHWAY database accessions/identifiers. KEGG PATHWAY is a collection of manually drawn pathway maps representing our knowledge on the molecular interaction, reaction and relation networks. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - pathways\n - reactions\n - KEGG Pathway\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to KEGG PATHWAY database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-9606-homo-sapiens-2019-05.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/uniprot-proteome-9606-homo-sapiens-2019-05.nt\n Name: human_protein_idmapping.csv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_idmapping.csv\n Output Subdomain\n Name: human_protein_xref_kegg.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_kegg.csv\n Name: human_protein_xref_kegg.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_kegg.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"18881\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"1\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"19060\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_protein_xref_kegg.csv" }