{ "bcoid": "GLY_000096", "title": "Mouse UniProtKB Xref CAZy", "description": "The Mouse UniprotKB Xref CAZy contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced ...", "filename": "mouse_protein_xref_cazy.csv", "filetype": "csv", "categories": { "species": "Mus Musculus", "molecule": "Protein", "tags": "Cazy cross-references", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P70419-1...", "CBM13..." ], [ "P70419-1...", "GT27..." ] ], "headers": [ "uniprotkb_ca...", "database_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "database_id" }, { "type": "string", "label": "database_label" } ], [ "P70419-1", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "P70419-1", "GT27", "Glycosyltransferase Family 27" ], [ "O08912-1", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "O08912-1", "GT27", "Glycosyltransferase Family 27" ], [ "Q80W26-1", "GH18", "Glycoside Hydrolase Family 18" ], [ "Q9JMH7-1", "GH33", "Glycoside Hydrolase Family 33" ], [ "Q9JMH3-1", "GH33", "Glycoside Hydrolase Family 33" ], [ "Q3TDQ1-1", "GT66", "Glycosyltransferase Family 66" ], [ "P70277-1", "GT29", "Glycosyltransferase Family 29" ], [ "Q5F2L2-1", "GT10", "Glycosyltransferase Family 10" ], [ "Q9WVL6-1", "GT47", "Glycosyltransferase Family 47" ], [ "Q9WVL6-1", "GT64", "Glycosyltransferase Family 64" ], [ "Q9Z0F0-1", "GT31", "Glycosyltransferase Family 31" ], [ "Q3USF0-1", "GT31", "Glycosyltransferase Family 31" ], [ "Q8VCB3-1", "GT3", "Glycosyltransferase Family 3" ], [ "Q3V1N9-1", "GT6", "Glycosyltransferase Family 6" ], [ "Q7TPN3-1", "GT76", "Glycosyltransferase Family 76" ], [ "Q920V1-1", "GT31", "Glycosyltransferase Family 31" ], [ "Q64435-1", "GT1", "Glycosyltransferase Family 1" ], [ "Q3UGP8-1", "GT59", "Glycosyltransferase Family 59" ], [ "Q11204-1", "GT29", "Glycosyltransferase Family 29" ], [ "P54751-1", "GT29", "Glycosyltransferase Family 29" ], [ "Q5DTK1-1", "GT31", "Glycosyltransferase Family 31" ], [ "Q5DTK1-1", "GT7", "Glycosyltransferase Family 7" ], [ "Q2HXL6-1", "GH47", "Glycoside Hydrolase Family 47" ], [ "Q8K1F9-1", "GH1", "Glycoside Hydrolase Family 1" ], [ "Q6P8H8-1", "GT57", "Glycosyltransferase Family 57" ], [ "Q8BJQ9-1", "GT7", "Glycosyltransferase Family 7" ], [ "Q8JZZ0-1", "GT1", "Glycosyltransferase Family 1" ], [ "Q09324-1", "GT14", "Glycosyltransferase Family 14" ], [ "Q6PB93-1", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q6PB93-1", "GT27", "Glycosyltransferase Family 27" ], [ "Q99MR9-1", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "O08650-1", "GT2", "Glycosyltransferase Family 2" ], [ "Q9JMK0-1", "GT7", "Glycosyltransferase Family 7" ], [ "Q8C7E7-1", "CBM20", "Carbohydrate-Binding Module Family 20" ], [ "Q6ZQ11-1", "GT31", "Glycosyltransferase Family 31" ], [ "Q6ZQ11-1", "GT7", "Glycosyltransferase Family 7" ], [ "Q8BJL9-1", "GT1", "Glycosyltransferase Family 1" ], [ "Q91W89-1", "GH38", "Glycoside Hydrolase Family 38" ], [ "Q8BTP0-1", "GT22", "Glycosyltransferase Family 22" ], [ "Q8BHC9-1", "GT10", "Glycosyltransferase Family 10" ], [ "Q3TAE8-1", "GT57", "Glycosyltransferase Family 57" ], [ "Q8VI38-1", "GT6", "Glycosyltransferase Family 6" ], [ "Q6P1J0-1", "GH99", "Glycoside Hydrolase Family 99" ], [ "Q8C1F4-1", "GT7", "Glycosyltransferase Family 7" ], [ "O09160-1", "GT11", "Glycosyltransferase Family 11" ], [ "Q9Z1M7-1", "GT8", "Glycosyltransferase Family 8" ], [ "Q9Z1M7-1", "GT49", "Glycosyltransferase Family 49" ], [ "Q9CW73-1", "GT43", "Glycosyltransferase Family 43" ], [ "Q8R087-1", "GT7", "Glycosyltransferase Family 7" ], [ "Q8R084-1", "GT1", "Glycosyltransferase Family 1" ], [ "Q6ZQI3-1", "CBM57", "Carbohydrate-Binding Module Family 57" ], [ "Q8K0J2-1", "GT31", "Glycosyltransferase Family 31" ], [ "Q8BW56-1", "GT4", "Glycosyltransferase Family 4" ], [ "Q91X88-1", "GT13", "Glycosyltransferase Family 13" ], [ "P97464-1", "GT47", "Glycosyltransferase Family 47" ], [ "P97464-1", "GT64", "Glycosyltransferase Family 64" ], [ "Q3UPY5-1", "GH35", "Glycoside Hydrolase Family 35" ], [ "O35632-1", "GH56", "Glycoside Hydrolase Family 56" ], [ "Q9D2N8-1", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q9D2N8-1", "GT27", "Glycosyltransferase Family 27" ], [ "Q7TMB3-1", "CBM21", "Carbohydrate-Binding Module Family 21" ], [ "Q6P5E4-1", "GT24", "Glycosyltransferase Family 24" ], [ "P54818-1", "GH59", "Glycoside Hydrolase Family 59" ], [ "O09008-1", "GT31", "Glycosyltransferase Family 31" ], [ "O09009-1", "GT31", "Glycosyltransferase Family 31" ], [ "P46978-1", "GT66", "Glycosyltransferase Family 66" ], [ "Q80VA0-1", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "Q80VA0-1", "GT27", "Glycosyltransferase Family 27" ], [ "Q8VCN3-1", "GT1", "Glycosyltransferase Family 1" ], [ "O35082-1", "GH1", "Glycoside Hydrolase Family 1" ], [ "Q80X89-1", "GT1", "Glycosyltransferase Family 1" ], [ "Q8C0L9-1", "CBM20", "Carbohydrate-Binding Module Family 20" ], [ "Q80W49-1", "CBM13", "Carbohydrate-Binding Module Family 13" ], [ "A3KGW5-1", "GT25", "Glycosyltransferase Family 25" ], [ "Q9D306-1", "GT54", "Glycosyltransferase Family 54" ], [ "Q8BJT9-1", "GH47", "Glycoside Hydrolase Family 47" ], [ "A4FUP9-1", "GT4", "Glycosyltransferase Family 4" ], [ "Q9QYJ1-1", "GT29", "Glycosyltransferase Family 29" ], [ "Q8VC60-1", "GH35", "Glycoside Hydrolase Family 35" ], [ "Q9DB25-1", "GT2", "Glycosyltransferase Family 2" ], [ "O70152-1", "GT2", "Glycosyltransferase Family 2" ], [ "Q8BRK9-1", "GH38", "Glycoside Hydrolase Family 38" ] ] }, "readme": "Name\n - Mouse UniProtKB Xref CAZy\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-03-15T12:05:44.324142\n\nModified on\n - 2019-04-23T16:09:21.021649\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Mouse UniprotKB Xref CAZy contains mouse [taxid:10090] UniProtKB canonical accessions cross-referenced to CAZy database accessions/identifiers. CAZy is a database of Carbohydrate-Active enZymes (CAZymes). The database contains a classification and associated information about enzymes involved in the synthesis, metabolism, and recognition of complex carbohydrates. The dataset is derived from 2019-05 UniProt release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - carbohydrate family\n - CAZy\n - glycosyltransferase\n - glycohydrolase\n - cross-reference\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to CAZy database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-10090-mus-musculus-2019-05.nt\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/uniprot-proteome-10090-mus-musculus-2019-05.nt\n Output Subdomain\n Name: mouse_protein_xref_cazy.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_protein_xref_cazy.csv\n Name: mouse_protein_xref_cazy.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_protein_xref_cazy.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"Accession assigned to the protein isoform chosen to be the canonical sequence to which all positional annotation refers in UniProtKB database\"\n Unique Values: \"284\"\n Name: \"database_label\"\n Description: \"Label or name assigned to the corresponding identifier in the source database\"\n Unique Values: \"77\"\n Name: \"database_id\"\n Description: \"Identifier in the database\"\n Unique Values: \"77\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_protein_xref_cazy.csv" }