{ "bcoid": "GLY_000078", "title": "Glycan Motif (Human GlyTouCan Masterlist)", "description": "The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). ...", "filename": "human_glycan_motif.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Glycan", "tags": "Motif", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00012MO...", "G00012MO..." ], [ "G00012MO...", "G00046MO..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_ac_motif" }, { "type": "string", "label": "motif_name" } ], [ "G00012MO", "G00012MO", "Glycosphingolipid Isoglobo series" ], [ "G00012MO", "G00046MO", "Galalpha1-3Gal epitope" ], [ "G00016MO", "G00016MO", "Glycosphingolipid Gala series" ], [ "G00017MO", "G00017MO", "Hyluronan" ], [ "G00018MO", "G00018MO", "Chondroitin 4S" ], [ "G00020MO", "G00020MO", "Keratansulfate" ], [ "G00026MO", "G00026MO", "N-Glycan core basic" ], [ "G00027MO", "G00027MO", "N-Glycan truncated motif. First GlcpNAC cut off" ], [ "G00028MO", "G00026MO", "N-Glycan core basic" ], [ "G00028MO", "G00028MO", "N-Glycan high mannose" ], [ "G00029MO", "G00026MO", "N-Glycan core basic" ], [ "G00029MO", "G00029MO", "N-Glycan hybrid" ], [ "G00030MO", "G00026MO", "N-Glycan core basic" ], [ "G00030MO", "G00030MO", "N-Glycan complex" ], [ "G00031MO", "G00031MO", "O-Glycan core 1" ], [ "G00031MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00032MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00033MO", "G00031MO", "O-Glycan core 1" ], [ "G00033MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00033MO", "G00033MO", "O-Glycan core 2" ], [ "G00033MO", "G00034MO", "O-Glycan core 2 fuzzy" ], [ "G00033MO", "G00041MO", "O-Glycan core 6" ], [ "G00033MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00034MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00034MO", "G00034MO", "O-Glycan core 2 fuzzy" ], [ "G00034MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00035MO", "G00035MO", "O-Glycan core 3" ], [ "G00035MO", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00036MO", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00037MO", "G00035MO", "O-Glycan core 3" ], [ "G00037MO", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00037MO", "G00037MO", "O-Glycan core 4" ], [ "G00037MO", "G00038MO", "O-Glycan core 4 fuzzy" ], [ "G00037MO", "G00041MO", "O-Glycan core 6" ], [ "G00037MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00038MO", "G00036MO", "O-Glycan core 3 fuzzy" ], [ "G00038MO", "G00038MO", "O-Glycan core 4 fuzzy" ], [ "G00038MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00039MO", "G00039MO", "O-Glycan core 5" ], [ "G00039MO", "G00040MO", "O-Glycan core 5 fuzzy" ], [ "G00040MO", "G00040MO", "O-Glycan core 5 fuzzy" ], [ "G00041MO", "G00041MO", "O-Glycan core 6" ], [ "G00041MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00042MO", "G00042MO", "O-Glycan core 6 Fuzzy" ], [ "G00044MO", "G00044MO", "O-Glycan core 7 fuzzy" ], [ "G00046MO", "G00046MO", "Galalpha1-3Gal epitope" ], [ "G00047MO", "G00047MO", "Lewis A" ], [ "G00048MO", "G00047MO", "Lewis A" ], [ "G00048MO", "G00048MO", "Lewis B" ], [ "G00048MO", "G00056MO", "Neo Lactosamine" ], [ "G00048MO", "G00068MO", "Blood group H" ], [ "G00049MO", "G00049MO", "Lewis C" ], [ "G00049MO", "G00056MO", "Neo Lactosamine" ], [ "G00049MO", "G00069MO", "Glycosphingolipid Lacto series" ], [ "G00050MO", "G00049MO", "Lewis C" ], [ "G00050MO", "G00050MO", "Lewis D" ], [ "G00050MO", "G00056MO", "Neo Lactosamine" ], [ "G00050MO", "G00068MO", "Blood group H" ], [ "G00050MO", "G00069MO", "Glycosphingolipid Lacto series" ], [ "G00051MO", "G00051MO", "Lewis X" ], [ "G00051MO", "G00055MO", "Lactosamine motif" ], [ "G00052MO", "G00051MO", "Lewis X" ], [ "G00052MO", "G00052MO", "Lewis Y" ], [ "G00052MO", "G00055MO", "Lactosamine motif" ], [ "G00052MO", "G00068MO", "Blood group H" ], [ "G00053MO", "G00047MO", "Lewis A" ], [ "G00053MO", "G00053MO", "Sialyl Lewis A" ], [ "G00053MO", "G00056MO", "Neo Lactosamine" ], [ "G00054MO", "G00051MO", "Lewis X" ], [ "G00054MO", "G00054MO", "Sialyl Lewis X" ], [ "G00054MO", "G00055MO", "Lactosamine motif" ], [ "G00054MO", "G00065MO", "VIM" ], [ "G00055MO", "G00055MO", "Lactosamine motif" ], [ "G00056MO", "G00056MO", "Neo Lactosamine" ], [ "G00057MO", "G00057MO", "LacDiNAc" ], [ "G00058MO", "G00055MO", "Lactosamine motif" ], [ "G00058MO", "G00058MO", "Polylactosamine" ], [ "G00059MO", "G00059MO", "Pk-Antigen" ], [ "G00061MO", "G00059MO", "Pk-Antigen" ], [ "G00061MO", "G00061MO", "P-Antigen" ], [ "G00063MO", "G00032MO", "O-Glycan core 1 fuzzy" ], [ "G00063MO", "G00063MO", "CAD" ], [ "G00065MO", "G00055MO", "Lactosamine motif" ], [ "G00065MO", "G00065MO", "VIM" ] ] }, "readme": "Name\n - Glycan Motif (Human GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-01-23T17:21:05.947104\n\nModified on\n - 2019-04-12T14:30:46.291499\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan motifs for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Human GlyTouCan accession master list (https://data.glygen.org/GLYDS000144). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Motif\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: allmotif.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/allmotif.tsv\n Output Subdomain\n Name: human_glycan_motif.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_motif.csv\n Name: human_glycan_motif.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_motif.stat.csv\n\nFields\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"4241\"\n Name: \"glytoucan_ac_motif\"\n Description: \"\"\n Unique Values: \"46\"\n Name: \"motif_name\"\n Description: \"Name of the motif associated with the glycan\"\n Unique Values: \"46\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/human_glycan_motif.csv" }