{ "bcoid": "GLY_000066", "title": "Glycan Properties (Mouse GlyTouCan Masterlist)", "description": "The dataset provides information on the glycan properties such as mass, permethlyated mass, topology, ...", "filename": "mouse_glycan_properties.csv", "filetype": "csv", "categories": { "species": "Mus musculus", "molecule": "Glycan", "tags": "Properties", "status": "Reviewed", "file_type": "csv", "scope": "internal" }, "minitable": { "content": [ [ "G00012MO...", "Saccharide..." ], [ "G00016MO...", "Saccharide..." ] ], "headers": [ "glytoucan_ac...", "glytoucan_ty..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "glytoucan_ac" }, { "type": "string", "label": "glytoucan_type" }, { "type": "string", "label": "glycan_mass" }, { "type": "string", "label": "glycan_permass" }, { "type": "string", "label": "base_composition" }, { "type": "string", "label": "composition" }, { "type": "string", "label": "topology" }, { "type": "string", "label": "monosaccharides" } ], [ "G00012MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G53509NM", "G15216HY", "4" ], [ "G00016MO", "Saccharide", "342.1162117", "454.24141226", "G90627TW", "G90960QG", "G61666PA", "2" ], [ "G00026MO", "Saccharide", "910.32778041", "1148.5938316", "G28681TP", "G71678CK", "G21458SP", "5" ], [ "G00028MO", "Saccharide", "1234.43342741", "1556.79337902", "G02815KT", "G89929IA", "G16127HW", "7" ], [ "G00029MO", "Saccharide", "1275.45997651", "1597.81992812", "G57776ZU", "G04263GM", "G37692XE", "7" ], [ "G00030MO", "Saccharide", "1316.48652562", "1638.84647723", "G35029YA", "G15843XU", "G26402SO", "7" ], [ "G00031MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G23052ZQ", "G67200RM", "2" ], [ "G00032MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G23052ZQ", "G14660IB", "2" ], [ "G00033MO", "Saccharide", "586.22213341", "740.39428418", "G58001LT", "G59848RU", "G31881UK", "3" ], [ "G00034MO", "Saccharide", "586.22213341", "740.39428418", "G58001LT", "G59848RU", "G27304YE", "3" ], [ "G00040MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G58852GK", "G43482PE", "2" ], [ "G00041MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G94131HY", "G86947FH", "2" ], [ "G00042MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G94131HY", "G68646SF", "2" ], [ "G00046MO", "Saccharide", "342.1162117", "454.24141226", "G90627TW", "G90960QG", "G61666PA", "2" ], [ "G00047MO", "Saccharide", "529.200669675", "669.357170375", "G54129SE", "G02497EU", "G22725MK", "3" ], [ "G00048MO", "Saccharide", "675.258578545", "843.446379385", "G82458HY", "G22979OY", "G27653YS", "4" ], [ "G00049MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G44029SF", "4" ], [ "G00050MO", "Saccharide", "853.306316675", "1077.5567178", "G54630CD", "G82935CH", "G29900GO", "5" ], [ "G00051MO", "Saccharide", "529.200669675", "669.357170375", "G54129SE", "G02497EU", "G22725MK", "3" ], [ "G00052MO", "Saccharide", "675.258578545", "843.446379385", "G82458HY", "G22979OY", "G27653YS", "4" ], [ "G00053MO", "Saccharide", "820.29608631", "1030.53083736", "G42932DS", "G58879PQ", "G12750SG", "4" ], [ "G00054MO", "Saccharide", "820.29608631", "1030.53083736", "G42932DS", "G58879PQ", "G12750SG", "4" ], [ "G00055MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G08749AK", "G80981NI", "2" ], [ "G00056MO", "Saccharide", "383.142760805", "495.267961365", "G43417UB", "G08749AK", "G80981NI", "2" ], [ "G00057MO", "Saccharide", "424.16930991", "536.29451047", "G27391WQ", "G94131HY", "G31801IX", "2" ], [ "G00058MO", "Saccharide", "748.27495691", "944.49405789", "G53434XO", "G83574AW", "G72872SQ", "4" ], [ "G00059MO", "Saccharide", "504.1690352", "658.34118597", "G39365VM", "G09269CO", "G78242EN", "3" ], [ "G00061MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G53509NM", "G81647RY", "4" ], [ "G00065MO", "Saccharide", "674.23817744", "856.44162835", "G22312GP", "G37772BP", "G90852NI", "3" ], [ "G00066MO", "Saccharide", "529.200669675", "669.357170375", "G54129SE", "G30886AB", "G11863LK", "3" ], [ "G00068MO", "Saccharide", "326.12129707", "424.23084756", "G08453HV", "G53862OE", "G44794CK", "2" ], [ "G00069MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G97048GO", "4" ], [ "G00070MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G47270FQ", "G97048GO", "4" ], [ "G00071MO", "Saccharide", "707.248407805", "903.467508785", "G08590QR", "G53509NM", "G07227QC", "4" ], [ "G00176HZ", "Saccharide", "1868.7031797", "2303.18833187", "G55382TU", "G76945EC", "G52953WI", "10" ], [ "G00272VU", "Saccharide", "1405.52297075", "1741.89857243", "G28997IA", "G40354OA", "G76336SS", "8" ], [ "G00320ZP", "Saccharide", "2513.87842253", "3130.56702561", "G84044GC", "G88057TN", "G72179WW", "12" ], [ "G00395TQ", "Saccharide", "894.33286578", "1118.5832669", "G93579XB", "G12641NB", "G19483CU", "5" ], [ "G00413UF", "Saccharide", "2587.915202", "3218.61945515", "G34447YB", "G60942FK", "G77329AN", "13" ], [ "G00463XD", "Saccharide", "2071.78255231", "2548.31465468", "G67367OT", "G54800IU", "G68500FC", "11" ], [ "G00503EE", "Saccharide", "2192.8088267", "2711.38787929", "G69364JQ", "G95640AM", "G96510EZ", "12" ], [ "G00504PZ", "Saccharide", "1683.6343718", "2104.1038739", "G50558OY", "G58155VH", "G69655PI", "9" ], [ "G00536FZ", "Saccharide", "2192.8088267", "2711.38787929", "G69364JQ", "G95640AM", "G96510EZ", "12" ], [ "G00646SN", "Saccharide", "2881.0262687", "3595.82442227", "G65117IS", "G78221KA", "G25467PR", "14" ], [ "G00659GQ", "Saccharide", "980.20971549", "1162.4131664", "G20710WH", "G88370GO", "G59594TK", "4" ], [ "G00662IB", "Saccharide", "2879.01061863", "3579.79312213", "G98715EM", "G58318SA", "G26085RC", "14" ], [ "G00672PE", "Saccharide", "900.2529009", "1096.47200188", "G73357FZ", "G98044QF", "G32987YD", "4" ], [ "G00706AL", "Saccharide", "2881.0262687", "3595.82442227", "G65117IS", "G78221KA", "G25467PR", "14" ], [ "G00743WU", "Saccharide", "2159.79859633", "2664.36199885", "G12621YH", "G56450GE", "G76497KR", "11" ], [ "G00797ZX", "Saccharide", "2914.06165121", "3600.82850464", "G51412NQ", "G53292XG", "G87279RC", "17" ], [ "G00826SV", "Saccharide", "1989.7294541", "2466.26155647", "G85740DB", "G64730RH", "G27860IO", "11" ], [ "G00830CM", "Saccharide", "2134.76696186", "2653.34601445", "G46293AU", "G39997WZ", "G13359TO", "11" ], [ "G00850LT", "Saccharide", "1072.38060391", "1352.69360531", "G92050GC", "G86052EW", "G58858DY", "6" ], [ "G00876GU", "Saccharide", "1882.64472141", "2373.19247386", "G80920RR", "G14351DY", "G96797KG", "11" ], [ "G00883DO", "Saccharide", "1640.59217262", "2047.04602465", "G10486CT", "G73811LP", "G23934NS", "9" ], [ "G00883ZT", "Saccharide", "1558.53907441", "1964.99292644", "G31852PQ", "G45552IY", "G71720UK", "9" ], [ "G00909GK", "Saccharide", "1519.56589823", "1883.97280004", "G49955PK", "G96281OZ", "G88489PQ", "8" ], [ "G00910WD", "Saccharide", "3683.31179031", "4580.31339479", "G31822JI", "G84022YT", "G56023AW", "18" ], [ "G00978TF", "Saccharide", "1275.45997651", "1597.81992812", "G57776ZU", "G86288VS", "G83155SV", "7" ], [ "G00986YT", "Saccharide", "1640.59217262", "2047.04602465", "G10486CT", "G73811LP", "G23934NS", "9" ], [ "G00995HW", "Saccharide", "2313.8351011", "2874.4611039", "G85987RP", "G11787WA", "G91005GM", "13" ], [ "G01223AA", "Saccharide", "2882.0466698", "3568.81352324", "G55216FT", "G81452FP", "G16603TV", "16" ], [ "G01342FO", "Saccharide", "3101.14610918", "3815.94426275", "G78811TO", "G72093CP", "G40241OL", "18" ], [ "G01354KL", "Saccharide", "2733.97311086", "3392.70866415", "G25569EP", "G58076ER", "G05314WL", "14" ], [ "G01361CV", "Saccharide", "2077.74549812", "2582.30890064", "G70382FA", "G40436IV", "G32340DX", "11" ], [ "G01614ZM", "Saccharide", "965.333594075", "1217.61529533", "G15864IF", "G38539SC", "G35609TJ", "4" ], [ "G01669LU", "Saccharide", "2296.81978536", "2857.44578816", "G52478RN", "G52223PR", "G09811CA", "12" ], [ "G01727PW", "Saccharide", "2587.915202", "3218.61945515", "G34447YB", "G60942FK", "G77329AN", "13" ], [ "G01760ZU", "Saccharide", "1072.38060391", "1352.69360531", "G92050GC", "G86052EW", "G46554NZ", "6" ], [ "G01767JJ", "Saccharide", "998.34382444", "1264.64117577", "G14090IF", "G08718YM", "G78620TU", "5" ], [ "G01789AQ", "Saccharide", "3027.08417757", "3769.91363128", "G66403JV", "G19326PJ", "G43454YS", "15" ], [ "G01856RL", "Saccharide", "1947.68250389", "2438.23025633", "G68486KE", "G18535SF", "G44617JK", "10" ], [ "G01935FK", "Saccharide", "1786.65008149", "2221.13523366", "G83555HU", "G01924ZE", "G42824SU", "10" ], [ "G01999JH", "Saccharide", "1437.51280002", "1801.91970183", "G39446WN", "G32909UL", "G43463XA", "8" ], [ "G02021XC", "Saccharide", "1398.50190098", "1776.92445287", "G96042XF", "G98643XP", "G26179IS", "8" ], [ "G02025MF", "Saccharide", "3304.22548179", "4061.07058556", "G87183DD", "G65391WE", "G61009AA", "19" ], [ "G02029PW", "Saccharide", "1026.37512458", "1278.65682584", "G95440AJ", "G50312CA", "G75067CP", "6" ], [ "G02174FQ", "Saccharide", "3683.31179031", "4580.31339479", "G31822JI", "G84022YT", "G56023AW", "18" ], [ "G02207TG", "Saccharide", "3027.08417757", "3769.91363128", "G66403JV", "G19326PJ", "G43454YS", "15" ], [ "G02251YG", "Saccharide", "2296.81978536", "2857.44578816", "G52478RN", "G52223PR", "G09811CA", "12" ], [ "G02284UY", "Saccharide", "2093.74041275", "2612.31946535", "G91897BH", "G00449DS", "G41068JX", "11" ], [ "G02302MM", "Saccharide", "3537.25388144", "4406.22418578", "G39937NF", "G03918DZ", "G42727HE", "17" ], [ "G02310VX", "Saccharide", "1868.7031797", "2303.18833187", "G55382TU", "G83224HD", "G12768AE", "10" ], [ "G02311IE", "Saccharide", "3099.10530697", "3841.93476068", "G95517DQ", "G40992GJ", "G80034HK", "16" ] ] }, "readme": "Name\n - Glycan Properties (Mouse GlyTouCan Masterlist)\n\nVersion\n - 1.4.5\n\nCreated on\n - 2019-01-23T17:21:05.934602\n\nModified on\n - 2019-04-12T14:15:33.628740\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu]\n\nAuthors\n - Nathan Edwards [nje5@georgetown.edu]\n\nChecksum\n - \n\nUsability Domain\n - The dataset provides information on the glycan properties such as mass, permethlyated mass, topology, base composition, composition and the number of monosaccharides for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Mouse GlyTouCan accession master list (https://data.glygen.org/GLYDS000145). Source database: https://glytoucan.org/\n\nDescription Domain\n Keywords\n - Glycan\n - GlyTouCan Accession\n - Properties\n\n Pipeline Steps\n - Step-1: The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list.\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_properties.tsv\n URI: https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/glycan_properties.tsv\n Output Subdomain\n Name: mouse_glycan_properties.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_properties.csv\n Name: mouse_glycan_properties.stat.csv\n URI: http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_properties.stat.csv\n\nFields\n Name: \"glycan_mass\"\n Description: \"Derivatized mass of the glycan\"\n Unique Values: \"432\"\n Name: \"glytoucan_type\"\n Description: \"Type of GlyTouCan accession (composition|saccharide|topology)\"\n Unique Values: \"3\"\n Name: \"base_composition\"\n Description: \"Base composition of the glycan\"\n Unique Values: \"446\"\n Name: \"glycan_permass\"\n Description: \"\"\n Unique Values: \"427\"\n Name: \"glytoucan_ac\"\n Description: \"\"\n Unique Values: \"2094\"\n Name: \"monosaccharides\"\n Description: \"Number of monosaccharides in glycan\"\n Unique Values: \"25\"\n Name: \"composition\"\n Description: \"Composition of glycan\"\n Unique Values: \"570\"\n Name: \"topology\"\n Description: \"Topology of the glycan\"\n Unique Values: \"981\"", "downloadurl": "/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_properties.csv" }