{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/database_accession_2019_02_07_03_58_16.tsv", 
                    "filename": "database_accession_2019_02_07_03_58_16.tsv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/human_glycan_xref_kegg.csv", 
                    "filename": "human_glycan_xref_kegg.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_xref_chebi_from_kegg.csv", 
                    "filename": "rat_glycan_xref_chebi_from_kegg.csv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/rat_glycan_xref_chebi_from_kegg.stat.csv", 
                    "filename": "rat_glycan_xref_chebi_from_kegg.stat.csv"
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    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000187/1.4.5", 
    "extension_domain": [
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            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Rattus norvegicus", 
                        "category_name": "species"
                    }, 
                    {
                        "category_value": "Glycan", 
                        "category_name": "molecule"
                    }, 
                    {
                        "category_value": "ChEBI cross-references (KEGG GLYCAN)", 
                        "category_name": "tags"
                    }, 
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }, 
                    {
                        "category_value": "csv", 
                        "category_name": "file_type"
                    }, 
                    {
                        "category_value": "external", 
                        "category_name": "scope"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "Glycan Xref ChEBI [KEGG] (Rat GlyTouCan Masterlist)", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Xavier Holmes", 
                "email": "xavierh@email.gwu.edu"
            }
        ], 
        "created": "2019-08-13T19:58:41.978103", 
        "modified": "2019-09-12T12:02:48.806086", 
        "version": "1.4.5"
    }, 
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        "keywords": [
            "Glycan", 
            "GlyTouCan Accession", 
            "ChEBI (KEGG Glycan ID)", 
            "Cross-references", 
            "ID/Accession Mapping"
        ], 
        "pipeline_steps": [
            {
                "name": "make_glycan_dataset.py", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
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                        "uri": "https://data.glygen.org/ln2wwwdata/source/human_glycan_xref_kegg.csv", 
                        "filename": "human_glycan_xref_kegg.csv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/rat_glycan_xref_chebi_from_kegg.csv", 
                        "filename": "rat_glycan_xref_chebi_from_kegg.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "A python script was generated to use the GlyTouCan Ac. to KEGG glycan  mapping file to extract the KEGG Glycan ID to ChEBI ID mapping from the ChEBI FTP download file."
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
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                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py", 
                    "filename": "make-glycan-dataset.py"
                }
            }
        ]
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The dataset provides cross-references to ChEBI Id's for the associated glycan (GlyTouCan Accession) based on the GlyTouCan to KEGG glycan ID mapping (https://data.glygen.org/GLYDS000192) . The listed GlyTouCan Accessions are derived from the Rat GlyTouCan accession master list (https://data.glygen.org/GLYDS000146). Source database: https://glytoucan.org/; https://pubchem.ncbi.nlm.nih.gov/;https://www.ebi.ac.uk/chebi/"
    ], 
    "etag": "", 
    "_id": {
        "$oid": "5d534eb1f5c47b2eda74f67a"
    }
}