{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/CID-Synonym-filtered_2019_05_06_10_23_08", 
                    "filename": "CID-Synonym-filtered_2019_05_06_10_23_08"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/chebiId_inchi.tsv", 
                    "filename": "chebiId_inchi.tsv"
                }
            }, 
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2wwwdata/source/cid2inchi.csv", 
                    "filename": "cid2inchi.csv"
                }
            }
        ], 
        "output_subdomain": [
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/human_glycan_xref_chebi.csv", 
                    "filename": "human_glycan_xref_chebi.csv"
                }
            }, 
            {
                "mediatype": "csv", 
                "uri": {
                    "uri": "http://data.glygen.org/ln2wwwdata/reviewed/human_glycan_xref_chebi.stat.csv", 
                    "filename": "human_glycan_xref_chebi.stat.csv"
                }
            }
        ]
    }, 
    "spec_version": "1.3.0", 
    "object_id": "https://biocomputeobject.org/GLY_000159/1.4.5", 
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json", 
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/", 
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                }, 
                "dataset_categories": [
                    {
                        "category_value": "Homo sapiens", 
                        "category_name": "species"
                    }, 
                    {
                        "category_value": "Glycan", 
                        "category_name": "molecule"
                    }, 
                    {
                        "category_value": "ChEBI cross-references(PUBCHEM CID)", 
                        "category_name": "tags"
                    }, 
                    {
                        "category_value": "Reviewed", 
                        "category_name": "status"
                    }, 
                    {
                        "category_value": "csv", 
                        "category_name": "file_type"
                    }, 
                    {
                        "category_value": "internal", 
                        "category_name": "scope"
                    }
                ]
            }
        }
    ], 
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/", 
        "name": "Glycan Xref ChEBI [PubChem CID] (Human GlyTouCan Masterlist)", 
        "contributors": [
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Rahi Navelkar", 
                "email": "rsn13@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Jeet Vora", 
                "email": "jeetvora@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Robel Kahsay", 
                "email": "rykahsay@gwu.edu"
            }, 
            {
                "affiliation": "The George Washington University", 
                "contribution": [
                    "createdBy"
                ], 
                "name": "Xavier Holmes", 
                "email": "xavierh@email.gwu.edu"
            }
        ], 
        "created": "2019-08-13T19:58:41.938103", 
        "modified": "2019-09-12T12:00:51.241048", 
        "version": "1.4.5"
    }, 
    "description_domain": {
        "keywords": [
            "Glycan", 
            "GlyTouCan Accession", 
            "ChEBI (PubChem CID)", 
            "Cross-references", 
            "ID/Accession Mapping"
        ], 
        "pipeline_steps": [
            {
                "name": "make_glycan_dataset.py", 
                "step_number": 1, 
                "version": "", 
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/cid2inchi.csv", 
                        "filename": "cid2inchi.csv"
                    }
                ], 
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2wwwdata/source/human_glycan_xref_chebi.csv", 
                        "filename": "human_glycan_xref_chebi.csv"
                    }
                ], 
                "prerequisite": [], 
                "description": "A python script was generated to use the GlyTouCan Ac. to PubChem CID  mapping file to extract the PubChem CID to ChEBI ID mapping from the PubChem FTP download file."
            }
        ]
    }, 
    "execution_domain": {
        "external_data_endpoints": [], 
        "environment_variables": {}, 
        "script_driver": "manual", 
        "software_prerequisites": [
            {
                "version": "2.7.5", 
                "name": "Python", 
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ], 
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py", 
                    "filename": "make-glycan-dataset.py"
                }
            }
        ]
    }, 
    "parametric_domain": [
        {
            "step": "", 
            "value": "", 
            "param": ""
        }
    ], 
    "usability_domain": [
        "The dataset provides cross-references to ChEBI Id's for the associated glycan (GlyTouCan Accession) based on the GlyTouCan to PubChem CID mapping (https://data.glygen.org/GLYDS000167) .  One-to-many PubChem CID to ChEBI mappings are resolved using InChI seqences downloaded from both (PubChem CID and ChEBI) databases. The listed GlyTouCan Accessions are derived from the Human GlyTouCan accession master list (https://data.glygen.org/GLYDS000144). Source database: https://glytoucan.org/; https://pubchem.ncbi.nlm.nih.gov/;https://www.ebi.ac.uk/chebi/"
    ], 
    "etag": "", 
    "_id": {
        "$oid": "5d534eb1f5c47b2eda74f65e"
    }
}