{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/compiled/human_protein_glyco_disease.csv",
                    "filename": "human_protein_glyco_disease.csv"
                }
            },
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_idmapping.csv",
                    "filename": "human_protein_idmapping.csv"
                }
            }
        ],
        "output_subdomain": [
            {
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_glyco_disease.csv",
                    "filename": "human_protein_glyco_disease.csv"
                },
                "mediatype": "csv"
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_glyco_disease.stat.csv",
                    "filename": "human_protein_glyco_disease.stat.csv"
                }
            }
        ]
    },
    "spec_version": "1.3.0",
    "object_id": "https://biocomputeobject.org/GLY_000277/v-1.4.5",
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Homo Sapiens",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Protein",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Diseases",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Human Glycosylation Diseases",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Xavier Holmes",
                "email": "xavierh@email.gwu.edu"
            },
            {
                "affiliation": "Monarch Initiative - Oregon Health & Science University",
                "contribution": [
                    "authoredBy"
                ],
                "name": "Jean-Philippe Gourdine",
                "email": "gourdine@ohsu.edu"
            }
        ],
        "created": "2019-09-06T16:21:59.896067",
        "modified": "",
        "version": "v-1.4.5"
    },
    "description_domain": {
        "keywords": [
            "glycosylation diseases",
            "MONDO ID",
            "Monarch Initiative"
        ],
        "pipeline_steps": [
            {
                "name": "make-protein-dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_idmapping.csv",
                        "filename": "human_protein_idmapping.csv"
                    },
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/compiled/human_protein_glyco_disease.csv",
                        "filename": "human_protein_glyco_disease.csv"
                    }
                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/human_protein_glyco_disease.csv",
                        "filename": "human_protein_glyco_disease.csv"
                    }
                ],
                "prerequisite": [],
                "description": "The script maps the UniProtKB accesions to the UniProtKB Canonical accessions"
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py",
                    "filename": "make-protein-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "value": "",
            "param": ""
        }
    ],
    "usability_domain": [
        "The Human Glycosylation Diseases dataset contains human [taxid:9606] glycosylations diseases mapped to UniProtKB canonical accessions from Monarch Initiative database. If you use this dataset please provide proper attribution to Monarch Initiative and GlyGen"
    ],
    "etag": "",
    "_id": {
        "$oid": "5d72bfe7f5c47b183c0ceec2"
    }
}
