{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/taxa.tsv",
                    "filename": "taxa.tsv"
                }
            },
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_enzyme.csv",
                    "filename": "mouse_glycan_enzyme.csv"
                }
            },
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv",
                    "filename": "mouse_proteoform_glycosylation_sites_unicarbkb.csv"
                }
            },
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/allmotif.tsv",
                    "filename": "allmotif.tsv"
                }
            }
        ],
        "output_subdomain": [
            {
                "mediatype": "",
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_accession_sources.csv",
                    "filename": "mouse_glycan_accession_sources.csv"
                }
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_accession_sources.stat.csv",
                    "filename": "mouse_glycan_accession_sources.stat.csv"
                }
            }
        ]
    },
    "spec_version": "1.3.0",
    "object_id": "https://biocomputeobject.org/GLY_000145/v-1.4.5",
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "Glycan",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Mus musculus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Master List",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Mouse GlyTouCan Masterlist",
        "contributors": [
            {
                "affiliation": "George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "George Washington University",
                "contribution": [
                    "authoredBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@email.gwu.edu"
            }
        ],
        "created": "2019-07-16T12:26:58.392765",
        "modified": "2019-09-12T10:51:14.036030",
        "version": "v-1.4.5"
    },
    "description_domain": {
        "keywords": [
            "Glycan",
            "GlyTouCan Accession",
            "Master List"
        ],
        "pipeline_steps": [
            {
                "name": "python",
                "step_number": 0,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/taxa.tsv",
                        "filename": "taxa.tsv"
                    },
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_enzyme.csv",
                        "filename": "mouse_glycan_enzyme.csv"
                    },
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv",
                        "filename": "mouse_proteoform_glycosylation_sites_unicarbkb.csv"
                    },
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/allmotif.tsv",
                        "filename": ""
                    }
                ],
                "output_list": [],
                "prerequisite": [],
                "description": "The output file was generated by appending the GlyTouCan accessions from 4 input files. The source column represents the category number based on the source input files: category_I : (Input file 1; where \"Taxid:9606\") The Glycan has aMouse [taxid:10090] (Mus musculus) species annotation from GlyTouCan and/UniCarbKB database. category_II: (Input file 2) The Glycan is synthesized by a Mouse [taxid:10090] (Mus musculus) protein. category_III: (Input file 3) The Glycan is known to be attached to a Mouse [taxid:10090] (Mus musculus) protein. category_IV: (Input file 4) The glycan is a motif of the glycan from categories I, II, III."
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py",
                    "filename": "make-glycan-dataset.py"
                }
            }
        ]
    },
    "parametric_domain": [
        {
            "step": "",
            "value": "",
            "param": ""
        }
    ],
    "usability_domain": [
        "The dataset contains a list of GlyTouCan accessions considered to be the GlyGen Mouse GlyTouCan Master list. The inclusion criteria are provided by a category number associated with the glycan (GlyTouCan Accession). category_ I: The Glycan has a mouse [taxid:10090] (Mus musculus) species annotation from GlyTouCan and/or UniCarbKB database. category_II:  The Glycan is associated to a Mouse [taxid:10090] (Mus musculus) biosynthetic enzyme. category_III: The Glycan is known to be attached to a Mouse [taxid:10090] (Mus musculus) protein. category_IV: The glycan is a motif of the glycan from categories I, II, III."
    ],
    "etag": "",
    "_id": {
        "$oid": "5d2dfad2f5c47b4a8a8f8db8"
    }
}