{
    "io_domain": {
        "input_subdomain": [
            {
                "uri": {
                    "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/glycan_properties.tsv",
                    "filename": "glycan_properties.tsv"
                }
            }
        ],
        "output_subdomain": [
            {
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_properties.csv",
                    "filename": "mouse_glycan_properties.csv"
                },
                "mediatype": "csv"
            },
            {
                "mediatype": "csv",
                "uri": {
                    "uri": "http://data.glygen.org/ln2data/releases/data/v-1.4.5/reviewed/mouse_glycan_properties.stat.csv",
                    "filename": "mouse_glycan_properties.stat.csv"
                }
            }
        ]
    },
    "spec_version": "1.3.0",
    "object_id": "https://biocomputeobject.org/GLY_000066/v-1.4.5",
    "extension_domain": [
        {
            "extension_schema": "http://www.w3id.org/biocompute/extension_domain/1.1.0/dataset/dataset_extension.json",
            "dataset_extension": {
                "additional_license": {
                    "data_license": "https://creativecommons.org/licenses/by/4.0/",
                    "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html"
                },
                "dataset_categories": [
                    {
                        "category_value": "Mus musculus",
                        "category_name": "species"
                    },
                    {
                        "category_value": "Glycan",
                        "category_name": "molecule"
                    },
                    {
                        "category_value": "Properties",
                        "category_name": "tags"
                    },
                    {
                        "category_value": "Reviewed",
                        "category_name": "status"
                    },
                    {
                        "category_value": "csv",
                        "category_name": "file_type"
                    },
                    {
                        "category_value": "internal",
                        "category_name": "scope"
                    }
                ]
            }
        }
    ],
    "provenance_domain": {
        "license": "https://creativecommons.org/licenses/by/4.0/",
        "name": "Glycan Properties  (Mouse GlyTouCan Masterlist)",
        "contributors": [
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Rahi Navelkar",
                "email": "rsn13@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Jeet Vora",
                "email": "jeetvora@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Robel Kahsay",
                "email": "rykahsay@gwu.edu"
            },
            {
                "affiliation": "The George Washington University",
                "contribution": [
                    "createdBy"
                ],
                "name": "Xavier Holmes",
                "email": "xavierh@email.gwu.edu"
            },
            {
                "affiliation": "Georgetown University",
                "contribution": [
                    "authoredBy"
                ],
                "name": "Nathan Edwards",
                "email": "nje5@georgetown.edu"
            }
        ],
        "created": "2019-01-23T17:21:05.934602",
        "modified": "2019-04-12T14:15:33.628740",
        "version": "v-1.4.5"
    },
    "description_domain": {
        "keywords": [
            "Glycan",
            "GlyTouCan Accession",
            "Properties"
        ],
        "pipeline_steps": [
            {
                "name": "make_glycan_dataset.py",
                "step_number": 1,
                "version": "",
                "input_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/glycan_properties.tsv",
                        "filename": "glycan_properties.tsv"
                    }
                ],
                "output_list": [
                    {
                        "uri": "https://data.glygen.org/ln2data/releases/data/v-1.4.5/source/mouse_glycan_properties.csv",
                        "filename": "mouse_glycan_properties.csv"
                    }
                ],
                "prerequisite": [],
                "description": "The input file was downloaded from the author and a python script is used to extract the data for the GlyTouCan accessions based on the acession master list. Refer to the usability domain for more information on master list."
            }
        ]
    },
    "execution_domain": {
        "external_data_endpoints": [],
        "environment_variables": {},
        "script_driver": "manual",
        "software_prerequisites": [
            {
                "version": "2.7.5",
                "name": "Python",
                "uri": {
                    "uri": "https://www.python.org/download/releases/2.7.5/"
                }
            }
        ],
        "script": [
            {
                "uri": {
                    "uri": "https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-glycan-dataset.py",
                    "filename": "make-glycan-dataset.py"
                }
            }
        ]
    },
    "error_domain": {
        "empirical_error": {},
        "algorithmic_error": {},
        "emperical_error": {}
    },
    "parametric_domain": [
        {
            "step": "",
            "param": "",
            "value": ""
        }
    ],
    "usability_domain": [
        "The dataset provides information on the glycan properties such as mass, permethlyated mass, topology, base composition, composition and the number of monosaccharides for the associated glycan (GlyTouCan Accession). The listed GlyTouCan Accessions are derived from the Mouse GlyTouCan accession master list (https://data.glygen.org/GLYDS000145). Source database: https://glytoucan.org/"
    ],
    "etag": "",
    "_id": {
        "$oid": "5c48e8d1f5c47b65ae4b5d2d"
    }
}