{ "bco_id": "http://data.glygen.org/GLY_######", "checksum": "", "bco_spec_version": "1.3.0", "provenance_domain": { "name": "BCO name", "version": "1.#.#", "license": "https://creativecommons.org/licenses/by/4.0/", "created": "", "modified": "", "contributors": [ { "name": "Jeet Vora", "orcid": "", "affiliation": "The George Washington University", "contribution": [ "createdBy" ], "email": "jeetvora@gwu.edu" }, { "name": "Karina Martinez", "orcid": "", "affiliation": "The George Washington University", "contribution": [ "createdBy" ], "email": "karinamartinez@gwu.edu" }, { "name": "Robel Kahsay", "orcid": "", "affiliation": "The George Washington University", "contribution": [ "createdBy" ], "email": "rykahsay@gwu.edu" }, { "name": "Amanda Bell", "orcid": "", "affiliation": "The George Washington University", "contribution": [ "createdBy" ], "email": "amandab2140@gwu.edu" }, { "name": "Jonathan Keeney", "orcid": "", "affiliation": "The George Washington University", "contribution": [ "createdBy" ], "email": "keeneyjg@gwu.edu" }, { "name": "Millicent Quartey", "orcid": "", "affiliation": "The George Washington University", "contribution": [ "createdBy" ], "email": "mquartey@gwu.edu" }, { "name": "Contributor Name", "orcid": "", "affiliation": "", "contribution": [ "contributedBy" ], "email": "" } ] }, "usability_domain": [ "Fill in applicable text here" ], "extension_domain": { "additional_license": { "data_license": "https://creativecommons.org/licenses/by/4.0/", "script_license": "https://www.gnu.org/licenses/gpl-3.0.en.html" }, "fhir_extension": [], "scm_extension": { "scm_repository": "", "scm_path": "", "scm_type": "git", "scm_commit": "" }, "dataset_categories": [ { "category_value": "Species name here", "category_name": "species" }, { "category_value": "Proteoform", "category_name": "molecule" }, { "category_value": "Category here", "category_name": "tags" }, { "category_value": "csv", "category_name": "file_type" }, { "category_value": "Reviewed", "category_name": "status" }, { "category_value": "internal", "category_name": "scope" } ] }, "description_domain": { "keywords": [ "keyword 1", "keyword 2" ], "pipeline_steps": [ { "name": "make-proteoform-dataset.py", "version": "", "step_number": 1, "input_list": [ { "access_time": "", "uri": "https://data.glygen.org/ln2releases/v-1.#.#/reviewed/species_protein_masterlist.csv", "filename": "species_protein_masterlist.csv" }, { "access_time": "", "uri": "http://data.glygen.org/ln2downloads/path/to/input_file.csv", "filename": "input_file.csv" } ], "output_list": [ { "access_time": "", "uri": "https://data.glygen.org/ln2releases/v-1.#.#/reviewed/output_file.csv", "filename": "output_file.csv" } ], "prerequisite": [], "description": "Fill in applicable text here" } ] }, "execution_domain": { "external_data_endpoints": [], "environment_variables": {}, "script_driver": "manual", "software_prerequisites": [ { "name": "Python", "version": "2.7.5", "uri": { "access_time": "", "sha1_chksum": "", "uri": "https://www.python.org/download/releases/2.7.5/" } } ], "script": [ { "uri": { "access_time": "", "sha1_chksum": "", "uri": "https://github.com/glygener/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py", "filename": "make-proteoform-dataset.py" } } ] }, "parametric_domain": [ { "step": "", "param": "", "value": "" } ], "io_domain": { "input_subdomain": [ { "uri": { "access_time": "", "sha1_chksum": "", "uri": "http://data.glygen.org/ln2downloads/path/to/input_file.csv", "filename": "input_file.csv" } }, { "uri": { "access_time": "", "sha1_chksum": "", "uri": "https://data.glygen.org/ln2releases/v-1.#.#/reviewed/species_protein_masterlist.csv", "filename": "species_protein_masterlist.csv" } } ], "output_subdomain": [ { "mediatype": "csv", "uri": { "access_time": "", "sha1_chksum": "", "uri": "https://data.glygen.org/ln2releases/v-1.#.#/reviewed/output_file.csv", "filename": "output_file.csv" } }, { "mediatype": "csv", "uri": { "access_time": "", "sha1_chksum": "", "uri": "https://data.glygen.org/ln2releases/v-1.#.#/reviewed/output_file.stat.csv", "filename": "output_file.stat.csv" } } ] }, "error_domain": { "empirical_error": {}, "algorithmic_error": {}, "emperical_error": {} } }