{ "bcoid": "GLY_000627", "title": "GlyGen-GeneCards Crossreferences Mapping", "description": "", "filename": "protein_glygen_genecards_xref_mapping.tsv", "filetype": "tsv", "categories": { "molecule": "Protein", "tags": "GlyGen-GeneCards Crossreferences", "file_type": "tsv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9P1W8...", "4 sites..." ], [ "Q2NKX8...", "1 site, 1 O-..." ] ], "headers": [ "uniprotkb_pr...", "additional_i..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_primary_accession" }, { "type": "string", "label": "additional_info" }, { "type": "string", "label": "glygen_url" } ], [ "Q9P1W8", "4 sites", "https://glygen.org/protein/Q9P1W8" ], [ "Q2NKX8", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q2NKX8" ], [ "P24387", "1 site, 6 N-linked glycans (1 site)", "https://glygen.org/protein/P24387" ], [ "Q8N3G9", "3 sites", "https://glygen.org/protein/Q8N3G9" ], [ "P14625", "12 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "https://glygen.org/protein/P14625" ], [ "Q07444", "3 sites", "https://glygen.org/protein/Q07444" ], [ "P01587", "4 sites", "https://glygen.org/protein/P01587" ], [ "Q8TE77", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q8TE77" ], [ "Q9BYT8", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q9BYT8" ], [ "Q15067", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q15067" ], [ "P15260", "6 sites, 10 N-linked glycans (5 sites)", "https://glygen.org/protein/P15260" ], [ "P22272", "4 sites", "https://glygen.org/protein/P22272" ], [ "Q80TS8", "3 sites", "https://glygen.org/protein/Q80TS8" ], [ "Q5QD23", "1 site", "https://glygen.org/protein/Q5QD23" ], [ "Q08406", "5 sites", "https://glygen.org/protein/Q08406" ], [ "A5D8T8", "2 sites, 1 O-linked glycan (1 site)", "https://glygen.org/protein/A5D8T8" ], [ "O14657", "2 sites, 4 N-linked glycans (1 site)", "https://glygen.org/protein/O14657" ], [ "Q91XZ0", "4 sites, 1 N-linked glycan (1 site)", "https://glygen.org/protein/Q91XZ0" ], [ "Q9Z137", "2 sites", "https://glygen.org/protein/Q9Z137" ], [ "Q13228", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q13228" ], [ "Q96L08", "1 site", "https://glygen.org/protein/Q96L08" ], [ "Q96LB9", "1 site", "https://glygen.org/protein/Q96LB9" ], [ "Q8N394", "1 site", "https://glygen.org/protein/Q8N394" ], [ "Q9BZW8", "8 sites", "https://glygen.org/protein/Q9BZW8" ], [ "P24046", "3 sites", "https://glygen.org/protein/P24046" ], [ "Q6AYF4", "10 sites", "https://glygen.org/protein/Q6AYF4" ], [ "Q99MF4", "2 sites", "https://glygen.org/protein/Q99MF4" ], [ "Q70EX6", "2 sites", "https://glygen.org/protein/Q70EX6" ], [ "Q16538", "1 site", "https://glygen.org/protein/Q16538" ], [ "P25100", "2 sites", "https://glygen.org/protein/P25100" ], [ "Q76JU9", "1 site", "https://glygen.org/protein/Q76JU9" ], [ "P13284", "5 sites, 17 N-linked glycans (2 sites)", "https://glygen.org/protein/P13284" ], [ "Q3UZZ4", "2 sites", "https://glygen.org/protein/Q3UZZ4" ], [ "O00418", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/O00418" ], [ "P47801", "3 sites", "https://glygen.org/protein/P47801" ], [ "Q63484", "2 sites", "https://glygen.org/protein/Q63484" ], [ "Q08211", "2 sites, 1 O-linked glycan (2 sites)", "https://glygen.org/protein/Q08211" ], [ "P41274", "3 sites", "https://glygen.org/protein/P41274" ], [ "Q9Z139", "4 sites", "https://glygen.org/protein/Q9Z139" ], [ "P01881", "5 sites", "https://glygen.org/protein/P01881" ], [ "O75019", "6 sites", "https://glygen.org/protein/O75019" ], [ "Q96AT9", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q96AT9" ], [ "Q6P996", "2 sites, 1 O-linked glycan (2 sites)", "https://glygen.org/protein/Q6P996" ], [ "Q69YH5", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q69YH5" ], [ "Q9UPC5", "5 sites", "https://glygen.org/protein/Q9UPC5" ], [ "A6NHS7", "3 sites", "https://glygen.org/protein/A6NHS7" ], [ "Q8NFQ6", "10 sites", "https://glygen.org/protein/Q8NFQ6" ], [ "Q16630", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q16630" ], [ "Q9WTR5", "8 sites, 21 N-linked glycans (4 sites)", "https://glygen.org/protein/Q9WTR5" ], [ "Q8WXG6", "2 sites, 1 O-linked glycan (2 sites)", "https://glygen.org/protein/Q8WXG6" ], [ "Q96T37", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q96T37" ], [ "Q9P0J7", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q9P0J7" ], [ "Q09666", "24 sites, 3 O-linked glycans (24 sites)", "https://glygen.org/protein/Q09666" ], [ "Q8TE12", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q8TE12" ], [ "O88909", "1 site", "https://glygen.org/protein/O88909" ], [ "Q8K596", "2 sites", "https://glygen.org/protein/Q8K596" ], [ "O60765", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/O60765" ], [ "Q8NG95", "2 sites", "https://glygen.org/protein/Q8NG95" ], [ "Q7M758", "10 sites", "https://glygen.org/protein/Q7M758" ], [ "P51868", "1 site", "https://glygen.org/protein/P51868" ], [ "Q8VCH9", "2 sites", "https://glygen.org/protein/Q8VCH9" ], [ "P69478", "4 sites", "https://glygen.org/protein/P69478" ], [ "Q96IX5", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q96IX5" ], [ "Q9EPK6", "2 sites, 3 N-linked glycans (1 site)", "https://glygen.org/protein/Q9EPK6" ], [ "Q9UBS5", "7 sites", "https://glygen.org/protein/Q9UBS5" ], [ "P07759", "4 sites, 5 N-linked glycans (2 sites)", "https://glygen.org/protein/P07759" ], [ "Q16762", "1 site", "https://glygen.org/protein/Q16762" ], [ "P11831", "15 sites, 1 O-linked glycan (12 sites)", "https://glygen.org/protein/P11831" ], [ "P49771", "2 sites", "https://glygen.org/protein/P49771" ], [ "P0DMU3", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/P0DMU3" ], [ "O60359", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/O60359" ], [ "Q9H7Y0", "1 site", "https://glygen.org/protein/Q9H7Y0" ], [ "Q9BZX2", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q9BZX2" ], [ "Q9QZE3", "2 sites", "https://glygen.org/protein/Q9QZE3" ], [ "Q96S94", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q96S94" ], [ "P97707", "2 sites", "https://glygen.org/protein/P97707" ], [ "Q3TAS6", "1 site, 6 N-linked glycans (1 site)", "https://glygen.org/protein/Q3TAS6" ], [ "P51674", "2 sites", "https://glygen.org/protein/P51674" ], [ "Q96EM0", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/Q96EM0" ], [ "P47914", "1 site, 1 O-linked glycan (1 site)", "https://glygen.org/protein/P47914" ], [ "Q96NH3", "1 site", "https://glygen.org/protein/Q96NH3" ], [ "A2RUS2", "2 sites, 1 O-linked glycan (2 sites)", "https://glygen.org/protein/A2RUS2" ], [ "Q6UVK1", "18 sites, 2 N-linked glycans (1 site), 3 O-linked glycans (2 sites)", "https://glygen.org/protein/Q6UVK1" ], [ "Q3U497", "1 site", "https://glygen.org/protein/Q3U497" ] ] }, "readme": "Name\n - GlyGen-GeneCards Crossreferences Mapping\n\nVersion\n - 1.11.2\n\nCreated on\n - 2022-03-29T12:16:21.978852\n\nModified on\n - 2022-03-29T12:17:52.605046\n\nCreated by\n - [jeetvora@gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nDescription Domain\n Keywords\n - GeneCards\n - GlyGen\n - crossreferences\n\n Pipeline Steps\n - Step-1: The script loads the GlyGen's UniProtKB protein accessions for human, mouse and rat species and extracts it into a csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-species-agnostic-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: glycan_xref_pubchem.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/glycan_xref_pubchem.csv\n Name: hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n Name: mouse_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n Name: hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n Name: rat_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: rat_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv\n Name: rat_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n Name: sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: sarscov1_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_xref_refseq.csv\n Name: sarscov2_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_protein_xref_refseq.csv\n Name: mouse_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_protein_xref_refseq.csv\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_refseq.csv\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_refseq.csv\n Name: sarscov2_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_protein_masterlist.csv\n Name: mouse_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_protein_masterlist.csv\n Name: sarscov1_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_masterlist.csv\n Name: rat_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_masterlist.csv\n Name: hcv1b_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1b_protein_masterlist.csv\n Name: hcv1a_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_protein_masterlist.csv\n Name: human_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: protein_glygen_genecards_xref_mapping.tsv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/protein_glygen_genecards_xref_mapping.tsv\n Name: protein_glygen_genecards_xref_mapping.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/protein_glygen_genecards_xref_mapping.stat.csv\n\nFields\n Name: \"uniprotkb_primary_accession\"\n Description: \"\"\n Unique Values: \"15293\"\n Name: \"additional_info\"\n Description: \"\"\n Unique Values: \"1289\"\n Name: \"glygen_url\"\n Description: \"\"\n Unique Values: \"15293\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/protein_glygen_genecards_xref_mapping.tsv" }