{
    "bcoid": "GLY_000614",
    "title": "SARS-CoV1 NCBI Protein Linkouts",
    "description": "The SARS coronavirus (SARS-CoV-1) NCBI Protein Linkouts contains sarscov1 [taxid:694009] NCBI RefSeq ...",
    "filename": "sarscov1_protein_ncbi_linkouts.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-1)",
        "molecule": "Protein",
        "tags": "NCBI Gene Linkouts",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "10227...",
                "Protein..."
            ],
            [
                "10227...",
                "Protein..."
            ]
        ],
        "headers": [
            "ProviderId...",
            "Database..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "ProviderId"
                },
                {
                    "type": "string",
                    "label": "Database"
                },
                {
                    "type": "string",
                    "label": "UID"
                },
                {
                    "type": "string",
                    "label": "URL"
                },
                {
                    "type": "string",
                    "label": "IconUrl"
                },
                {
                    "type": "string",
                    "label": "UrlName"
                },
                {
                    "type": "string",
                    "label": "SubjectType"
                },
                {
                    "type": "string",
                    "label": "Attribute"
                }
            ],
            [
                "10227",
                "Protein",
                "NP_828855",
                "https://glygen.org/protein/P59596",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828851",
                "https://glygen.org/protein/P59594",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828858",
                "https://glygen.org/protein/P59595",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828854",
                "https://glygen.org/protein/P59637",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_849177",
                "https://glygen.org/protein/Q80H93",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828849",
                "https://glygen.org/protein/P0C6X7",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828853",
                "https://glygen.org/protein/P59633",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828852",
                "https://glygen.org/protein/P59632",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828859",
                "https://glygen.org/protein/P59636",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828857",
                "https://glygen.org/protein/P59635",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_828856",
                "https://glygen.org/protein/P59634",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_849175",
                "https://glygen.org/protein/Q7TFA1",
                "",
                "",
                "",
                ""
            ],
            [
                "10227",
                "Protein",
                "NP_849176",
                "https://glygen.org/protein/Q7TFA0",
                "",
                "",
                "",
                ""
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV1 NCBI Protein Linkouts\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2021-10-15T15:17:10.443738\n\nModified on\n   - 2021-10-15T15:19:15.825317\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - \n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-1) NCBI Protein Linkouts contains sarscov1 [taxid:694009] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n   - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n   Keywords\n   - NCBI Protein Linkouts\n   - RefSeq\n\n   Pipeline Steps\n   - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: sarscov1_protein_proteinnames_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_proteinnames_refseq.csv\n      Name: sarscov1_protein_xref_refseq.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_xref_refseq.csv\n   Output Subdomain\n      Name: sarscov1_protein_ncbi_linkouts.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_ncbi_linkouts.csv\n      Name: sarscov1_protein_ncbi_linkouts.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_ncbi_linkouts.stat.csv\n\nFields\n      Name: \"ProviderId\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Database\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UID\"\n     Description: \"NA\"\n      Unique Values: \"13\"\n      Name: \"URL\"\n     Description: \"NA\"\n      Unique Values: \"13\"\n      Name: \"IconUrl\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"UrlName\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"SubjectType\"\n     Description: \"NA\"\n      Unique Values: \"1\"\n      Name: \"Attribute\"\n     Description: \"NA\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/sarscov1_protein_ncbi_linkouts.csv"
}