{ "bcoid": "GLY_000535", "title": "SARS-CoV2 Proteoform Citations (GlyConnect)", "description": "The SARS-CoV2 Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the ...", "filename": "sarscov2_proteoform_citations_glycosylation_glyconnect.csv", "filetype": "csv", "categories": { "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)", "molecule": "Proteoform", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0DTC2-1...", "Site-specifi..." ], [ "P0DTC2-1...", "Site-specifi..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, 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"protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G02030ZB" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G23432EQ" ], [ "P0DTC2-1", "Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2.", "Glycobiology", "2020 May 4", "Shajahan A, Supekar NT, Gleinich AS, Azadi P", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "G22310AV" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G11870QZ" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G23863VK" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G70822IO" ], [ "P0DTC2-1", "Identification of 22 N-glycosites on spike glycoprotein of SARS-CoV-2 and accessible surface glycopeptide motifs: implications for vaccination and antibody therapeutics.", "Glycobiology", "2020 Jun 10", "Zhou D, Tian X, Qi R, Peng C, Zhang W", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "G14669DU" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G14669DU" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G11629QQ" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G91636VS" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G81295CK" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G70418MS" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G03382KH" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G75983OB" ], [ "P0DTC2-1", "Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2.", "Glycobiology", "2020 May 4", "Shajahan A, Supekar NT, Gleinich AS, Azadi P", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "G49874UX" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G49874UX" ], [ "P0DTC2-1", "Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2.", "Glycobiology", "2020 May 4", "Shajahan A, Supekar NT, Gleinich AS, Azadi P", "protein_xref_pubmed", "32363391", "protein_xref_glyconnect", "2838", "G06110VR" ], [ "P0DTC2-1", "Identification of 22 N-glycosites on spike glycoprotein of SARS-CoV-2 and accessible surface glycopeptide motifs: implications for vaccination and antibody therapeutics.", "Glycobiology", "2020 Jun 10", "Zhou D, Tian X, Qi R, Peng C, Zhang W", "protein_xref_pubmed", "32518941", "protein_xref_glyconnect", "2839", "G06110VR" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G06110VR" ], [ "P0DTC2-1", "Site-specific glycan analysis of the SARS-CoV-2 spike.", "Science (New York, N.Y.)", "2020 May 4", "Watanabe Y, Allen JD, Wrapp D, McLellan JS, Crispin M", "protein_xref_pubmed", "32366695", "protein_xref_glyconnect", "2840", "G72291OX" ] ] }, "readme": "Name\n - SARS-CoV2 Proteoform Citations (GlyConnect)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-12-11T14:19:01.972822\n\nModified on\n - 2020-12-11T14:24:00.759472\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Frederique Lisacek [frederique.lisacek@sib.swiss], Julien Mariethoz [julien.mariethoz@sib.swiss]\n\nChecksum\n - \n\nUsability Domain\n - The SARS-CoV2 Proteoform Citations (GlyConnect) dataset provides citation details corresponding to the PubMed ID (PMID) from file https://data.glygen.org/GLYDS000530. The script accesses the NCBI ENTREZ infrastructure to retrieve the publication information of the given PMID. The dataset is contributed by GlyGen and processed by GlyGen. If you use this dataset please provide proper attribution to GlyConnect (https://glyconnect.expasy.org/).\n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - GlyConnect\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the input file for PMIDs and accesses the NCBI Entrez infrastructure to download the publication information of the corresponding PMIDs\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n Name: sarscov2_proteoform_citations_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/compiled/sarscov2_proteoform_citations_unicarbkb.csv\n Output Subdomain\n Name: sarscov2_proteoform_citations_glycosylation_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_citations_glycosylation_glyconnect.csv\n Name: sarscov2_proteoform_citations_glycosylation_glyconnect.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_citations_glycosylation_glyconnect.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"7\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"6\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"6\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"7\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"7\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"2\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"7\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"202\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/sarscov2_proteoform_citations_glycosylation_glyconnect.csv" }