{
    "bcoid": "GLY_000523",
    "title": "Mouse Glycation Sites (UniProtKB)",
    "description": "The Mouse Glycosylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical accessions ...",
    "filename": "mouse_proteoform_glycation_sites_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "Mus musculus",
        "molecule": "Proteoform",
        "tags": "Glycation Sites (UniProtKB)",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "Q60795-1...",
                "566..."
            ],
            [
                "Q60795-1...",
                "479..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "glycation_si..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "glycation_site_uniprotkb"
                },
                {
                    "type": "string",
                    "label": "amino_acid"
                },
                {
                    "type": "string",
                    "label": "saccharide"
                },
                {
                    "type": "string",
                    "label": "glycation_type"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "src_xref_key"
                },
                {
                    "type": "string",
                    "label": "src_xref_id"
                },
                {
                    "type": "string",
                    "label": "uniprotkb_glycation_annotation_comment"
                },
                {
                    "type": "string",
                    "label": "data_source"
                },
                {
                    "type": "string",
                    "label": "eco_id"
                },
                {
                    "type": "string",
                    "label": "carb_name"
                }
            ],
            [
                "Q60795-1",
                "566",
                "Lys",
                "",
                "n-linked",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "N-linked (Glc) (glycation) lysine",
                "UniProtKB",
                "ECO_0000250",
                "Glc"
            ],
            [
                "Q60795-1",
                "479",
                "Lys",
                "",
                "n-linked",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "N-linked (Glc) (glycation) lysine",
                "UniProtKB",
                "ECO_0000250",
                "Glc"
            ],
            [
                "Q60795-1",
                "464",
                "Lys",
                "",
                "n-linked",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "N-linked (Glc) (glycation) lysine",
                "UniProtKB",
                "ECO_0000250",
                "Glc"
            ],
            [
                "Q60795-1",
                "454",
                "Lys",
                "",
                "n-linked",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "protein_xref_uniprotkb_gly",
                "Q60795",
                "N-linked (Glc) (glycation) lysine",
                "UniProtKB",
                "ECO_0000250",
                "Glc"
            ]
        ]
    },
    "readme": "Name\n   - Mouse Glycation Sites (UniProtKB)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-08-17T17:46:24.854615\n\nModified on\n   - 2022-01-13T17:13:47.256455\n\nCreated by\n   -  [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Not Applicable []\n\nChecksum\n   - \n\nUsability Domain\n   - The Mouse Glycosylation Sites (UniProtKB) dataset contains mouse [taxid:10090] UniProtKB canonical accessions with information on reported and predicted glycosylation sites in UniProtKB database. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen. \n\nDescription Domain\n   Keywords\n   - glycosylation\n   - reported glycosylation\n   - predicted glycosylation\n   - UniProtKB\n   - PubMed\n   - Evidence and conclusion Ontology\n\n   Pipeline Steps\n   - Step-1: The script loads the glycosylation information from the triplestore containing triples from the nt file and extracts as a csv dataset. \n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-proteoform-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-mus-musculus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-mus-musculus.nt\n   Output Subdomain\n      Name: mouse_proteoform_glycation_sites_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycation_sites_uniprotkb.csv\n      Name: mouse_proteoform_glycation_sites_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycation_sites_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"glycation_site_uniprotkb\"\n     Description: \"\"\n      Unique Values: \"4\"\n      Name: \"amino_acid\"\n     Description: \"Three letter abbreviation code of the amino acid\"\n      Unique Values: \"1\"\n      Name: \"saccharide\"\n     Description: \"Sugar\"\n      Unique Values: \"1\"\n      Name: \"glycation_type\"\n     Description: \"Site on the protein sequence of the UniProtKB entry where glycation is observed\"\n      Unique Values: \"1\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"1\"\n      Name: \"src_xref_key\"\n     Description: \"Source Xref  key\"\n      Unique Values: \"1\"\n      Name: \"src_xref_id\"\n     Description: \"Source X-ref ID\"\n      Unique Values: \"1\"\n      Name: \"uniprotkb_glycation_annotation_comment\"\n     Description: \"\"\n      Unique Values: \"1\"\n      Name: \"data_source\"\n     Description: \"The source database for the data\"\n      Unique Values: \"1\"\n      Name: \"eco_id\"\n     Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n      Unique Values: \"1\"\n      Name: \"carb_name\"\n     Description: \"carbohydrate name\"\n      Unique Values: \"1\"",
    "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/mouse_proteoform_glycation_sites_uniprotkb.csv"
}