{ "bcoid": "GLY_000522", "title": "Human Glycation Sites (UniProtKB)", "description": "", "filename": "human_proteoform_glycation_sites_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Glycation Sites (UniProtKB)", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P02647-1...", "263..." ], [ "P02647-1...", "263..." ] ], "headers": [ "uniprotkb_ca...", "glycation_si..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "uniprotkb_glycation_annotation_comment" }, { "type": "string", "label": "data_source" }, { "type": "string", "label": "eco_id" }, { "type": "string", "label": "carb_name" } ], [ "P02647-1", "263", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "P02647", "protein_xref_uniprotkb_gly", "P02647", "N-linked (Glc) (glycation) lysine", "PubMed", "ECO_0000269", "Glc" ], [ "P02647-1", "263", "Lys", "", "n-linked", "protein_xref_pubmed", "8261628", "protein_xref_uniprotkb_gly", "P02647", "N-linked (Glc) (glycation) lysine", "PubMed", "ECO_0000269", "Glc" ], [ "P10636-1", "467", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "P10636", "protein_xref_uniprotkb_gly", "P10636", "N-linked (Glc) (glycation) lysine; 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in PHF-tau; in vitro", "PubMed", "ECO_0000269", "Glc" ], [ "Q16236-1", "462", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "Q16236", "protein_xref_uniprotkb_gly", "Q16236", "N-linked (Glc) (glycation) lysine", "PubMed", "ECO_0000269", "Glc" ], [ "Q16236-1", "462", "Lys", "", "n-linked", "protein_xref_pubmed", "31398338", "protein_xref_uniprotkb_gly", "Q16236", "N-linked (Glc) (glycation) lysine", "PubMed", "ECO_0000269", "Glc" ], [ "P68871-1", "2", "Val", "", "n-linked", "protein_xref_uniprotkb_gly", "P68871", "protein_xref_uniprotkb_gly", "P68871", "N-linked (Glc) (glycation) valine; in Hb A1c", "PubMed", "ECO_0000269", "Glc" ], [ "P68871-1", "2", "Val", "", "n-linked", "protein_xref_pubmed", "635569", "protein_xref_uniprotkb_gly", "P68871", "N-linked (Glc) (glycation) valine; in Hb A1c", "PubMed", "ECO_0000269", "Glc" ], [ "P61769-1", "114", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "P61769", "protein_xref_uniprotkb_gly", "P61769", "N-linked (Glc) (glycation) lysine; 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in vitro", "PubMed", "ECO_0000269", "Glc" ], [ "P02768-1", "341", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "P02768", "protein_xref_uniprotkb_gly", "P02768", "N-linked (Glc) (glycation) lysine", "PubMed", "ECO_0000269", "Glc" ], [ "P02768-1", "341", "Lys", "", "n-linked", "protein_xref_pubmed", "3759977", "protein_xref_uniprotkb_gly", "P02768", "N-linked (Glc) (glycation) lysine", "PubMed", "ECO_0000269", "Glc" ], [ "P07738-1", "197", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "P07738", "protein_xref_uniprotkb_gly", "P07738", "N-linked (Glc) (glycation) lysine; in vitro", "PubMed", "ECO_0000269", "Glc" ], [ "P07738-1", "197", "Lys", "", "n-linked", "protein_xref_pubmed", "9832630", "protein_xref_uniprotkb_gly", "P07738", "N-linked (Glc) (glycation) lysine; in vitro", "PubMed", "ECO_0000269", "Glc" ], [ "P61769-1", "61", "Lys", "", "n-linked", "protein_xref_uniprotkb_gly", "P61769", "protein_xref_uniprotkb_gly", "P61769", "N-linked (Glc) (glycation) lysine; in vitro", "PubMed", "ECO_0000269", "Glc" ] ] }, "readme": "Name\n - Human Glycation Sites (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-08-17T17:02:18.395740\n\nModified on\n - 2020-08-17T17:05:39.113816\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_proteoform_glycation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycation_sites_uniprotkb.csv\n Name: human_proteoform_glycation_sites_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycation_sites_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"12\"\n Name: \"glycation_site_uniprotkb\"\n Description: \"\"\n Unique Values: \"66\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"3\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"1\"\n Name: \"glycation_type\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycation is observed\"\n Unique Values: \"1\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"2\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"27\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"12\"\n Name: \"uniprotkb_glycation_annotation_comment\"\n Description: \"\"\n Unique Values: \"6\"\n Name: \"data_source\"\n Description: \"The source database for the data\"\n Unique Values: \"1\"\n Name: \"eco_id\"\n Description: \"Evidence & Conclusion Ontology (ECO) identifier\"\n Unique Values: \"1\"\n Name: \"carb_name\"\n Description: \"carbohydrate name\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_proteoform_glycation_sites_uniprotkb.csv" }