{ "bcoid": "GLY_000500", "title": "Human Glycosylation Unique to Data sources", "description": "", "filename": "human_proteoform_glycosylation_unique_sources.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Proteoform", "tags": "Unique Glycosylation Sites", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "A0A075B759-1...", "..." ], [ "A0A075B759-1...", "..." ] ], "headers": [ "uniprotkb_ca...", "glycosylatio..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": 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"unique-site-with-glycan-to-o_glcnac_mcw", "", "", "", "", "" ], [ "A2RTX5-1", "", "G49108TO", "o-linked", "protein_xref_oglcnac_db", "A2RTX5", "protein_xref_oglcnac_db", "A2RTX5", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "", "", "" ], [ "A2RTX5-1", "", "G49108TO", "o-linked", "protein_xref_pubmed", "28411811", "protein_xref_oglcnac_db", "A2RTX5", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "", "", "" ], [ "A2RUS2-1", "854", "G49108TO", "o-linked", "protein_xref_oglcnac_db", "A2RUS2", "protein_xref_oglcnac_db", "A2RUS2", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "854", "854", "" ], [ "A2RUS2-1", "854", "G49108TO", "o-linked", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A2RUS2", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "854", "854", "" ], [ "A2RUS2-1", "857", "G49108TO", "o-linked", "protein_xref_oglcnac_db", "A2RUS2", "protein_xref_oglcnac_db", "A2RUS2", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "857", "857", "" ], [ "A2RUS2-1", "857", "G49108TO", "o-linked", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "A2RUS2", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "857", "857", "" ], [ "A3KMH1-1", "", "G49108TO", "o-linked", "protein_xref_oglcnac_db", "A3KMH1", "protein_xref_oglcnac_db", "A3KMH1", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "", "", "" ], [ "A3KMH1-1", "", "G49108TO", "o-linked", "protein_xref_pubmed", "28510447", "protein_xref_oglcnac_db", "A3KMH1", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "", "", "" ], [ "A3KN83-1", "108", "G49108TO", "o-linked", "protein_xref_oglcnac_db", "A3KN83", "protein_xref_oglcnac_db", "A3KN83", "unique-site-with-glycan-to-o_glcnac_mcw", "", "", "108", "108", "" ] ] }, "readme": "Name\n - Human Glycosylation Unique to Data sources\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-06-04T09:44:08.947606\n\nModified on\n - 2020-06-04T10:09:49.041370\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n\nI/O Domain\n Input Subdomain\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: n_sequon_info.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/misc/n_sequon_info.csv\n Output Subdomain\n Name: human_proteoform_glycosylation_unique_sources.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_unique_sources.csv\n Name: human_proteoform_glycosylation_unique_sources.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_unique_sources.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"9203\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"3326\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"1934\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"8\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"13\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"13399\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"8\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"11647\"\n Name: \"uniqueness_flag\"\n Description: \"\"\n Unique Values: \"25\"\n Name: \"n_sequon\"\n Description: \"\"\n Unique Values: \"276\"\n Name: \"n_sequon_type\"\n Description: \"\"\n Unique Values: \"7\"\n Name: \"start_pos\"\n Description: \"Start position of the gene on the chromosome\"\n Unique Values: \"3326\"\n Name: \"end_pos\"\n Description: \"End position of the gene on the chromosome\"\n Unique Values: \"3326\"\n Name: \"site_seq\"\n Description: \"\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_unique_sources.csv" }