{ "bcoid": "GLY_000499", "title": "GlyGen-PubChem Protein Crossreferences Mapping", "description": "The GlyGen-PubChem Protein Cross-references dataset contains UniProtKB glycoprotein accessions for human ...", "filename": "protein_glygen_pubchem_xref_mapping.csv", "filetype": "csv", "categories": { "molecule": "Protein", "tags": "GlyGen-PubChem Protein Crossreferences", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9P1W8...", "NP_001034597..." ], [ "Q2NKX8...", "NP_060139..." ] ], "headers": [ "uniprotkb_ac...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "glycosylation_annotation" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "pubchem_cid" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "pmid" } ], [ "Q9P1W8", "NP_001034597", "4 sites", "", "", "", "", "", "" ], [ "Q2NKX8", "NP_060139", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "23301498" ], [ "Q8N3G9", "NP_001127922", "3 sites", "", "", "", "", "", "" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "30397120" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "29485866" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "26853435" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "30444036" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "30059200" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "32119511" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "219", "G49108TO", "24139", "O-linked", "25367160" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "30397120" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "29485866" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "26853435" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "30444036" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "30059200" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "32119511" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Thr", "490", "G49108TO", "24139", "O-linked", "25367160" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "30397120" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "29485866" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "26853435" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "30444036" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "30059200" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "32119511" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Ser", "64", "G49108TO", "24139", "O-linked", "25367160" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Asn", "217", "G55220VL", "70698382", "N-linked", "32125861" ], [ "P14625", "NP_003290", "11 sites, 19 N-linked glycans (5 sites), 1 O-linked glycan (3 sites)", "Asn", "217", "G80966KZ", "70698383", "N-linked", "32125861" ], [ "Q07444", "NP_002252", "3 sites", "", "", "", "", "", "" ], [ "P08120", "NP_723044", "1 site", "", "", "", "", "", "" ], [ "P01587", "NP_034099", "4 sites", "", "", "", "", "", "" ], [ "Q8TE77", "NP_060327", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "29485866" ], [ "Q8TE77", "NP_060327", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "28510447" ], [ "Q9BYT8", "NP_065777", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "28510447" ], [ "Q15067", "NP_001171968", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "28510447" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "", "", "G09724ZC", "91853268", "N-linked", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "", "", "G07483YN", "91857605", "N-linked", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "", "", "G53168IY", "91853165", "N-linked", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "", "", "G82348BZ", "91846271", "N-linked", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "79", "G09724ZC", "91853268", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "86", "G53168IY", "91853165", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "34", "G09724ZC", "91853268", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "179", "G07483YN", "91857605", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "179", "G53168IY", "91853165", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "86", "G07483YN", "91857605", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "34", "G82348BZ", "91846271", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "79", "G82348BZ", "91846271", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "86", "G82348BZ", "91846271", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "179", "G82348BZ", "91846271", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "79", "G07483YN", "91857605", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "34", "G07483YN", "91857605", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "179", "G09724ZC", "91853268", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "79", "G53168IY", "91853165", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "34", "G53168IY", "91853165", "Asn", "8142896" ], [ "P15260", "NP_000407", "6 sites, 4 Asn glycans (4 sites), 10 N-linked glycans (2 sites)", "asn", "86", "G09724ZC", "91853268", "Asn", "8142896" ], [ "P22272", "NP_001297605", "4 sites", "", "", "", "", "", "" ], [ "Q80TS8", "NP_766298", "3 sites", "", "", "", "", "", "" ], [ "Q5QD23", "NP_001009650", "1 site", "", "", "", "", "", "" ], [ "Q08406", "NP_001003929", "5 sites", "", "", "", "", "", "" ], [ "Q9Z137", "NP_072131", "2 sites", "", "", "", "", "", "" ], [ "Q13228", "NP_001245217", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "23301498" ], [ "Q13228", "NP_001245217", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "24126823" ], [ "Q96L08", "NP_001273935", "1 site", "", "", "", "", "", "" ], [ "Q96LB9", "NP_443123", "1 site", "", "", "", "", "", "" ], [ "Q8N394", "NP_001307250", "1 site", "", "", "", "", "", "" ], [ "Q9BZW8", "NP_001160135", "8 sites", "", "", "", "", "", "" ], [ "P24046", "NP_001243632", "3 sites", "", "", "", "", "", "" ], [ "Q6AYF4", "NP_001004263", "10 sites", "", "", "", "", "", "" ], [ "Q99MF4", "NP_620816", "2 sites", "", "", "", "", "", "" ], [ "Q70EX6", "NP_932166", "2 sites", "", "", "", "", "", "" ], [ "Q16538", "NP_055264", "1 site", "", "", "", "", "", "" ], [ "P25100", "NP_000669", "2 sites", "", "", "", "", "", "" ], [ "Q76JU9", "NP_918946", "1 site", "", "", "", "", "", "" ], [ "Q3UZZ4", "NP_001025465", "2 sites", "", "", "", "", "", "" ], [ "O00418", "NP_037434", "1 site, 1 O-linked glycan (1 site)", "", "", "G49108TO", "24139", "O-linked", "23301498" ], [ "P47801", "NP_001275556", "3 sites", "", "", "", "", "", "" ], [ "Q63484", "NP_113763", "2 sites", "", "", "", "", "", "" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "30397120" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "22121020" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "23301498" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "26853435" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "30444036" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "32119511" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Ser", "1152", "G49108TO", "24139", "O-linked", "29351928" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Thr", "1153", "G49108TO", "24139", "O-linked", "30397120" ], [ "Q08211", "NP_001348", "2 sites, 1 O-linked glycan (2 sites)", "Thr", "1153", "G49108TO", "24139", "O-linked", "22121020" ] ] }, "readme": "Name\n - GlyGen-PubChem Protein Crossreferences Mapping\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-06-04T09:25:12.224023\n\nModified on\n - 2022-01-13T17:10:17.085590\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The GlyGen-PubChem Protein Cross-references dataset contains UniProtKB glycoprotein accessions for human [taxid:9606], mouse [taxid:10090], rat [taxid:10116], hcv1a [taxid:11108], hcv1b [taxid:11116], sarscov1 [taxid:694009] and sarscov2 [taxid:2697049] glycoproteins for the purpose of PubChem Protein to GlyGen cross-references. In the dataset, the UniProtKB glycoprotein accessions are mapped to the RefSeq accessions and glycosylation annotation corresponding to glycoprotein have been added. The glycosylation annotation provides information about total (N,O,S,C) glycosylation sites followed by (if available) reported N-glycans and/or reported O-glycans with the number of sites. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB, NCBI RefSeq and GlyGen. \n\nDescription Domain\n Keywords\n - PubChem Protein\n - GlyGen\n - crossreferences\n - human\n - mouse\n - rat\n - hcv1a\n - hcv1b\n - sarscov1\n - sarscov2\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the GlyGen's UniProtKB protein accessions for human, mouse, rat, hcv1a, hcv1b, sarscov1 and sarscov2 species and maps it to the refseq accessions and adds the corresponding glycosylation annotation to extract it into a csv dataset file. \n\nExecution Domain\n Scripts\n\n Software Prerequisites\n\nI/O Domain\n Input Subdomain\n Name: glycan_xref_pubchem.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/glycan_xref_pubchem.csv\n Name: hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n Name: hcv1a_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_proteoform_glycosylation_sites_literature.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_tyr_o_linked.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_tyr_o_linked.csv\n Name: sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb_glycomics_study.csv\n Name: human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n Name: mouse_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_pdb.csv\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n Name: hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining.csv\n Name: sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n Name: rat_proteoform_glycosylation_sites_pdb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_pdb.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: rat_proteoform_glycosylation_sites_literature_mining.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_literature_mining.csv\n Name: human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: sarscov1_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_literature.csv\n Name: rat_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_literature_mining_manually_verified.csv\n Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n Name: sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_literature.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_literature.csv\n Name: sarscov1_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_xref_refseq.csv\n Name: sarscov2_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_protein_xref_refseq.csv\n Name: mouse_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_protein_xref_refseq.csv\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_refseq.csv\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_refseq.csv\n Name: sarscov2_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_protein_masterlist.csv\n Name: mouse_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_protein_masterlist.csv\n Name: sarscov1_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_protein_masterlist.csv\n Name: rat_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_masterlist.csv\n Name: hcv1b_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1b_protein_masterlist.csv\n Name: hcv1a_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_protein_masterlist.csv\n Name: human_protein_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_masterlist.csv\n Output Subdomain\n Name: protein_glygen_pubchem_xref_mapping.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/protein_glygen_pubchem_xref_mapping.csv\n Name: protein_glygen_pubchem_xref_mapping.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/protein_glygen_pubchem_xref_mapping.stat.csv\n\nFields\n Name: \"uniprotkb_ac\"\n Description: \"Accession assigned to the protein in the UniProtKB database\"\n Unique Values: \"13954\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"13559\"\n Name: \"glycosylation_annotation\"\n Description: \"Glycosylation annotation\"\n Unique Values: \"729\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"8\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"1997\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"383\"\n Name: \"pubchem_cid\"\n Description: \"\"\n Unique Values: \"383\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"7\"\n Name: \"pmid\"\n Description: \"NCBI PubMed database Identifier\"\n Unique Values: \"664\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/protein_glygen_pubchem_xref_mapping.csv" }