{
    "bcoid": "GLY_000426",
    "title": "SARS-CoV2 Gene Symbols (UniProtKB)",
    "description": "The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Gene Symbols (UniProtKB) dataset contains UniProtKB gene ...",
    "filename": "sarscov2_protein_genenames_uniprotkb.csv",
    "filetype": "csv",
    "categories": {
        "species": "SARS coronavirus (SARS-CoV-2 or 2019-nCoV)",
        "molecule": "Protein",
        "tags": "Gene Symbols",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "P0DTD2-1...",
                "..."
            ],
            [
                "P0DTD3-1...",
                "..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "gene_symbol_..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "gene_symbol_recommended"
                },
                {
                    "type": "string",
                    "label": "gene_symbol_alternative"
                },
                {
                    "type": "string",
                    "label": "orf_name"
                }
            ],
            [
                "P0DTD2-1",
                "",
                "",
                "9b"
            ],
            [
                "P0DTD3-1",
                "",
                "",
                "9c"
            ],
            [
                "P0DTC9-1",
                "N",
                "",
                ""
            ],
            [
                "P0DTC7-1",
                "",
                "",
                "7a"
            ],
            [
                "P0DTC6-1",
                "",
                "",
                "6"
            ],
            [
                "P0DTC5-1",
                "",
                "",
                "M"
            ],
            [
                "P0DTC4-1",
                "E",
                "",
                "4"
            ],
            [
                "P0DTC3-1",
                "",
                "",
                "3a"
            ],
            [
                "P0DTC2-1",
                "S",
                "",
                "2"
            ],
            [
                "A0A663DJA2-1",
                "ORF10",
                "orf10",
                ""
            ],
            [
                "P0DTD8-1",
                "",
                "",
                "7b"
            ],
            [
                "P0DTD1-1",
                "rep",
                "",
                "1a-1b"
            ],
            [
                "P0DTC8-1",
                "",
                "",
                "8"
            ]
        ]
    },
    "readme": "Name\n   - SARS-CoV2 Gene Symbols (UniProtKB)\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2020-04-03T11:46:41.584409\n\nModified on\n   - 2020-04-10T12:25:51.302937\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The SARS coronavirus (SARS-CoV-2 or 2019-nCov) Gene Symbols (UniProtKB) dataset contains UniProtKB gene symbols/names for sarscov2 [taxid:2697049] proteins. It contains the recommended gene symbol, alternative gene symbol and ORF gene names assigned by the Gene Name Nomenclature  commitees. (for more info - https://www.uniprot.org/help/gene_name). The dataset is derived from 2020-01 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n   Keywords\n   - protein alternative name\n   - UniProtKB\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB gene symbols for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-sars-cov-2.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-sars-cov-2.nt\n   Output Subdomain\n      Name: sarscov2_protein_genenames_uniprotkb.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_protein_genenames_uniprotkb.csv\n      Name: sarscov2_protein_genenames_uniprotkb.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_protein_genenames_uniprotkb.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"13\"\n      Name: \"gene_symbol_recommended\"\n     Description: \"\"The official gene symbol recommended by the Gene Nomenclature Committees like HGNC\"\n      Unique Values: \"6\"\n      Name: \"gene_symbol_alternative\"\n     Description: \"The alternative gene symbols to the recommended recommeded gene symbols in UniProtKB\"\n      Unique Values: \"2\"\n      Name: \"orf_name\"\n     Description: \"\"The orf name as a gene name are the names that are temporarily attributed to an open reading frame (ORF) by a sequencing project. This name can be based on a cosmid numbering system\"\n      Unique Values: \"12\"",
    "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/sarscov2_protein_genenames_uniprotkb.csv"
}