{ "bcoid": "GLY_000405", "title": "Human NCBI Protein Linkouts", "description": "The Human NCBI Protein Linkouts contains human [taxid:9606] NCBI RefSeq accessions with their corresponding ...", "filename": "human_protein_ncbi_linkouts.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "NCBI Gene Linkouts", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "10227...", "Protein..." ], [ "10227...", "Protein..." ] ], "headers": [ "ProviderId...", "Database..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "ProviderId" }, { "type": "string", "label": "Database" }, { "type": "string", "label": "UID" }, { "type": "string", "label": "URL" }, { "type": "string", "label": "IconUrl" }, { "type": "string", "label": "UrlName" }, { "type": "string", "label": "SubjectType" }, { "type": "string", "label": "Attribute" } ], [ "10227", "Protein", "NP_000289", "https://glygen.org/protein/P30613", "", "", "", "" ], [ "10227", "Protein", "NP_115972", "https://glygen.org/protein/Q96J66", "", "", "", "" ], [ "10227", "Protein", "NP_150229", "https://glygen.org/protein/Q96J65", "", "", "", "" ], [ "10227", "Protein", "XP_016880588", "https://glygen.org/protein/Q8NC06", "", "", "", "" ], [ "10227", "Protein", "NP_001269358", "https://glygen.org/protein/Q8NBW4", "", "", "", "" ], [ "10227", "Protein", "NP_001191892", "https://glygen.org/protein/P40424", "", "", "", "" ], [ "10227", "Protein", "NP_002577", "https://glygen.org/protein/P40425", "", "", "", "" ], [ "10227", "Protein", "NP_001128250", "https://glygen.org/protein/P40426", "", "", "", "" ], [ "10227", "Protein", "NP_001257420", "https://glygen.org/protein/P40429", "", "", "", "" ], [ "10227", "Protein", "NP_001269467", "https://glygen.org/protein/P62873", "", "", "", "" ], [ "10227", "Protein", "NP_114413", "https://glygen.org/protein/Q9H2I8", "", "", "", "" ], [ "10227", "Protein", "NP_001243455", "https://glygen.org/protein/H0YL14", "", "", "", "" ], [ "10227", "Protein", "NP_001290177", "https://glygen.org/protein/Q9GZS3", "", "", "", "" ], [ "10227", "Protein", "NP_001138668", "https://glygen.org/protein/Q5VVP1", "", "", "", "" ], [ "10227", "Protein", "NP_620166", "https://glygen.org/protein/Q8N865", "", "", "", "" ], [ "10227", "Protein", "NP_001137472", "https://glygen.org/protein/A6NIR3", "", "", "", "" ], [ "10227", "Protein", "NP_277047", "https://glygen.org/protein/Q86VY4", "", "", "", "" ], [ "10227", "Protein", "NP_001245205", "https://glygen.org/protein/Q86VY9", "", "", "", "" ], [ "10227", "Protein", "NP_005096", "https://glygen.org/protein/Q9Y5S9", "", "", "", "" ], [ "10227", "Protein", "NP_004607", "https://glygen.org/protein/P19075", "", "", "", "" ], [ "10227", "Protein", "NP_001308279", "https://glygen.org/protein/Q96QE4", "", "", "", "" ], [ "10227", "Protein", "NP_000425", "https://glygen.org/protein/Q99519", "", "", "", "" ], [ "10227", "Protein", "NP_001073964", "https://glygen.org/protein/O15417", "", "", "", "" ], [ "10227", "Protein", "NP_001288117", "https://glygen.org/protein/Q96RU7", "", "", "", "" ], [ "10227", "Protein", "NP_055848", "https://glygen.org/protein/Q96RU3", "", "", "", "" ], [ "10227", "Protein", "NP_001333187", "https://glygen.org/protein/Q96RU2", "", "", "", "" ], [ "10227", "Protein", "NP_001310000", "https://glygen.org/protein/Q01813", "", "", "", "" ], [ "10227", "Protein", "NP_001269914", "https://glygen.org/protein/Q96RU8", "", "", "", "" ], [ "10227", "Protein", "NP_940890", "https://glygen.org/protein/Q6ZRV2", "", "", "", "" ], [ "10227", "Protein", "NP_001284500", "https://glygen.org/protein/P16520", "", "", "", "" ], [ "10227", "Protein", "NP_116229", "https://glygen.org/protein/Q8NCJ5", "", "", "", "" ], [ "10227", "Protein", "NP_001305415", "https://glygen.org/protein/Q9Y296", "", "", "", "" ], [ "10227", "Protein", "NP_003930", "https://glygen.org/protein/Q9Y297", "", "", "", "" ], [ "10227", "Protein", "NP_054753", "https://glygen.org/protein/Q9Y294", "", "", "", "" ], [ "10227", "Protein", "NP_004138", "https://glygen.org/protein/Q9Y295", "", "", "", "" ], [ "10227", "Protein", "NP_001002034", "https://glygen.org/protein/Q6ICB4", "", "", "", "" ], [ "10227", "Protein", "NP_056519", "https://glygen.org/protein/Q6ICB0", "", "", "", "" ], [ "10227", "Protein", "NP_002118", "https://glygen.org/protein/P17693", "", "", "", "" ], [ "10227", "Protein", "NP_004645", "https://glygen.org/protein/O00507", "", "", "", "" ], [ "10227", "Protein", "NP_002258", "https://glygen.org/protein/O00505", "", "", "", "" ], [ "10227", "Protein", "NP_001124333", "https://glygen.org/protein/O00501", "", "", "", "" ], [ "10227", "Protein", "XP_006720407", "https://glygen.org/protein/O15033", "", "", "", "" ], [ "10227", "Protein", "NP_001258792", "https://glygen.org/protein/Q8IYD2", "", "", "", "" ], [ "10227", "Protein", "NP_060564", "https://glygen.org/protein/Q8IYD1", "", "", "", "" ], [ "10227", "Protein", "NP_001275909", "https://glygen.org/protein/Q8IYD9", "", "", "", "" ], [ "10227", "Protein", "NP_001295062", "https://glygen.org/protein/Q8IYD8", "", "", "", "" ], [ "10227", "Protein", "NP_056147", "https://glygen.org/protein/Q8IVD9", "", "", "", "" ], [ "10227", "Protein", "NP_000765", "https://glygen.org/protein/P24903", "", "", "", "" ], [ "10227", "Protein", "NP_001005214", "https://glygen.org/protein/Q8N7C0", "", "", "", "" ], [ "10227", "Protein", "NP_001317466", "https://glygen.org/protein/O00560", "", "", "", "" ], [ "10227", "Protein", "NP_001317601", "https://glygen.org/protein/Q9UPQ0", "", "", "", "" ], [ "10227", "Protein", "NP_001273680", "https://glygen.org/protein/Q92552", "", "", "", "" ], [ "10227", "Protein", "NP_001034791", "https://glygen.org/protein/Q9NV23", "", "", "", "" ], [ "10227", "Protein", "NP_001093110", "https://glygen.org/protein/Q9NV29", "", "", "", "" ], [ "10227", "Protein", "NP_001093587", "https://glygen.org/protein/Q9UQ26", "", "", "", "" ], [ "10227", "Protein", "NP_001073972", "https://glygen.org/protein/P0C7I6", "", "", "", "" ], [ "10227", "Protein", "NP_001243801", "https://glygen.org/protein/P0C7I0", "", "", "", "" ], [ "10227", "Protein", "NP_001013649", "https://glygen.org/protein/Q5HYW2", "", "", "", "" ], [ "10227", "Protein", "NP_001019626", "https://glygen.org/protein/Q5HYW3", "", "", "", "" ], [ "10227", "Protein", "NP_036591", "https://glygen.org/protein/Q9Y5J9", "", "", "", "" ], [ "10227", "Protein", "NP_001284661", "https://glygen.org/protein/Q8N8Q8", "", "", "", "" ], [ "10227", "Protein", "NP_001128516", "https://glygen.org/protein/P45984", "", "", "", "" ], [ "10227", "Protein", "XP_011541699", "https://glygen.org/protein/Q06413", "", "", "", "" ], [ "10227", "Protein", "NP_001243998", "https://glygen.org/protein/Q969H0", "", "", "", "" ], [ "10227", "Protein", "NP_001002296", "https://glygen.org/protein/Q7Z5G4", "", "", "", "" ], [ "10227", "Protein", "NP_036324", "https://glygen.org/protein/Q9Y5J6", "", "", "", "" ], [ "10227", "Protein", "NP_056529", "https://glygen.org/protein/P27469", "", "", "", "" ], [ "10227", "Protein", "NP_004786", "https://glygen.org/protein/Q9UEF7", "", "", "", "" ], [ "10227", "Protein", "NP_001027449", "https://glygen.org/protein/Q9H239", "", "", "", "" ], [ "10227", "Protein", "NP_001269096", "https://glygen.org/protein/Q9H237", "", "", "", "" ], [ "10227", "Protein", "NP_001287763", "https://glygen.org/protein/Q8NEQ5", "", "", "", "" ], [ "10227", "Protein", "NP_849162", "https://glygen.org/protein/Q8NEQ6", "", "", "", "" ], [ "10227", "Protein", "NP_001305862", "https://glygen.org/protein/O75078", "", "", "", "" ], [ "10227", "Protein", "NP_001317382", "https://glygen.org/protein/Q9BSA4", "", "", "", "" ], [ "10227", "Protein", "XP_016865948", "https://glygen.org/protein/Q9C0D0", "", "", "", "" ], [ "10227", "Protein", "XP_006722683", "https://glygen.org/protein/Q14584", "", "", "", "" ], [ "10227", "Protein", "XP_011509278", "https://glygen.org/protein/P35052", "", "", "", "" ], [ "10227", "Protein", "XP_016865061", "https://glygen.org/protein/P16499", "", "", "", "" ], [ "10227", "Protein", "NP_001263247", "https://glygen.org/protein/Q9H7J1", "", "", "", "" ], [ "10227", "Protein", "NP_001161419", "https://glygen.org/protein/O60830", "", "", "", "" ], [ "10227", "Protein", "NP_009144", "https://glygen.org/protein/O60831", "", "", "", "" ], [ "10227", "Protein", "NP_001135935", "https://glygen.org/protein/O60832", "", "", "", "" ], [ "10227", "Protein", "NP_009194", "https://glygen.org/protein/O14579", "", "", "", "" ], [ "10227", "Protein", "XP_005264573", "https://glygen.org/protein/Q9UBP0", "", "", "", "" ] ] }, "readme": "Name\n - Human NCBI Protein Linkouts\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-03-20T15:53:27.297125\n\nModified on\n - 2021-02-22T17:15:08.434845\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nUsability Domain\n - The Human NCBI Protein Linkouts contains human [taxid:9606] NCBI RefSeq accessions with their corresponding GlyGen protein detail page URLs. The dataset is formatted as per NCBI non-bib. linkouts guidelines where 10277 is the GlyGen's provider ID.\n - The RefSeq accessions are The dataset is derived from NCBI RefSeq Release 96, September 9, 2019\n\nDescription Domain\n Keywords\n - NCBI Protein Linkouts\n - RefSeq\n\n Pipeline Steps\n - Step-1: The script loads the RefSeq accessions, RefSeq protein name and based on the RefSeq-UniprotKB accession mapping generates the GlyGen protein detail page URLs. The script also enters the other fields as defined by the NCBI Protein Linkouts to generate a csv dataset\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_proteinnames_refseq.csv\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_ncbi_linkouts.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_ncbi_linkouts.csv\n Name: human_protein_ncbi_linkouts.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_ncbi_linkouts.stat.csv\n\nFields\n Name: \"ProviderId\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Database\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UID\"\n Description: \"NA\"\n Unique Values: \"22482\"\n Name: \"URL\"\n Description: \"NA\"\n Unique Values: \"18980\"\n Name: \"IconUrl\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"UrlName\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"SubjectType\"\n Description: \"NA\"\n Unique Values: \"1\"\n Name: \"Attribute\"\n Description: \"NA\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_ncbi_linkouts.csv" }