{ "bcoid": "GLY_000394", "title": "Rat Protein Names (NCBI RefSeq)", "description": "The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other ...", "filename": "rat_protein_proteinnames_refseq.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Protein", "tags": "Protein Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "D3ZB48-1...", "NP_001101416..." ], [ "D3ZB48-1...", "NP_001101416..." ] ], "headers": [ "uniprotkb_ca...", "refseq_ac..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "refseq_ac" }, { "type": "string", "label": "refseq_protein_name" } ], [ "D3ZB48-1", "NP_001101416", "protein Hook homolog 1" ], [ "D3ZB48-1", "NP_001101416", "hook homolog 1" ], [ "Q5RJZ1-1", "XP_006235834", "regulator of telomere elongation helicase 1 isoform X1" ], [ "Q0HA29-1", "NP_001041507", "nicotinamide/nicotinic acid mononucleotide adenylyltransferase 2" ], [ "Q0HA29-1", "NP_001041507", "nicotinamide mononucleotide adenylyltransferase 2; NMN adenylyltransferase 2; naMN adenylyltransferase 1; nicotinate-nucleotide adenylyltransferase 1; naMN adenylyltransferase 2; NMN/NaMN adenylyltransferase 2; nicotinate-nucleotide adenylyltransferase 2" ], [ "A0A0G2JVG8-1", "NP_001000969", "olfactory receptor Olr410" ], [ "A0A0G2JVG8-1", "NP_001000969", "olfactory receptor gene Olr410" ], [ "Q99372-1", "NP_036854", "elastin precursor" ], [ "Q99372-1", "NP_036854", "Tropoelastin" ], [ "A0A096MJY1-1", "XP_001077762", "glypican-6 isoform X2" ], [ "Q5RJK6-1", "NP_001012131", "inositol polyphosphate 1-phosphatase" ], [ "Q62949-1", "NP_036967", "cortistatin preproprotein" ], [ "Q62949-1", "NP_036967", "Preprocortistatin" ], [ "P01946-1", "NP_001007723", "hemoglobin alpha, adult chain 2" ], [ "P01946-1", "NP_001007723", "2-alpha-1 globin; 2-alpha globin; hemoglobin alpha 2 chain; globin c2; globin c3; Hemoglobin subunit alpha-1/2; Alpha-1/2-globin; Hemoglobin alpha-1/2 chain; hemoglobin, alpha 2" ], [ "Q5M9G9-1", "NP_001012154", "FAST kinase domain-containing protein 4" ], [ "Q5M9G9-1", "NP_001012154", "protein TBRG4; transforming growth factor beta regulated gene 4" ], [ "O35152-1", "NP_062241", "BET1-like protein" ], [ "O35152-1", "NP_062241", "golgi SNARE, 15 kD; GOS-15; vesicle transport protein GOS15; golgi SNARE with a size of 15 kDa; Golgi soluble N-ethylmaleimide-sensitive factor attachment protein 15; blocked early in transport 1 homolog like" ], [ "P30936-1", "NP_598206", "somatostatin receptor type 3" ], [ "P30936-1", "NP_598206", "SS3R; SSR-28; SS3-R; SS-3-R; somatostatin receptor 28; somatostatin receptor subtype 3" ], [ "O35158-1", "NP_059054", "cell adhesion molecule-related/down-regulated by oncogenes precursor" ], [ "O35158-1", "NP_059054", "immunoglobulin superfamily member; cell adhesion molecule-related/down-regulated by oncogenes; Cdon homolog" ], [ "P02761-1", "NP_671747", "major urinary protein precursor" ], [ "P02761-1", "NP_671747", "major urinary protein; alpha-2u-globulin; alpha(2)-euglobulin; allergen n I; allergen Rat n I" ], [ "P02764-1", "NP_445740", "alpha-1-acid glycoprotein precursor" ], [ "P02764-1", "NP_445740", "alpha-1-acid glycoprotein" ], [ "P02767-1", "NP_036813", "transthyretin precursor" ], [ "P02767-1", "NP_036813", "prealbumin, amyloidosis type I" ], [ "D4A4W8-1", "NP_001099679", "T-box transcription factor T" ], [ "D4A4W8-1", "NP_001099679", "brachyury protein; brachyury homolog; T brachyury transcription factor" ], [ "D4A4W0-1", "NP_001000252", "olfactory receptor Olr338" ], [ "D4A4W0-1", "NP_001000252", "olfactory receptor gene Olr338" ], [ "D4A4W4-1", "NP_001102458", "epoxide hydrolase 3" ], [ "D4A4W4-1", "NP_001102458", "abhydrolase domain containing 9" ], [ "D4A4W6-1", "NP_001102977", "SRA stem-loop-interacting RNA-binding protein, mitochondrial" ], [ "D4A4W7-1", "NP_001103026", "protein MGARP" ], [ "D4A4W7-1", "NP_001103026", "hypoxia up-regulated mitochondrial movement regulator; ovary-specific acidic protein" ], [ "G3V6I3-1", "NP_001101765", "pre-mRNA-splicing factor CWC25 homolog" ], [ "G3V6I3-1", "NP_001101765", "coiled-coil domain containing 49" ], [ "P21932-1", "NP_570135", "adenylate cyclase type 3" ], [ "P21932-1", "NP_570135", "AC3; AC-III; adenylyl cyclase 3; ATP pyrophosphate-lyase 3; adenylate cyclase type III; adenylate cyclase, olfactive type; type III adenylyl cyclase" ], [ "Q8K4K5-1", "NP_001291542", "lethal(2) giant larvae protein homolog 1" ], [ "Q8K4K5-1", "NP_001291542", "lethal giant larvae homolog 1, scribble cell polarity complex component; LLGL1, scribble cell polarity complex component" ], [ "G3V6I6-1", "XP_006249914", "adiponectin receptor protein 1 isoform X1" ], [ "G3V6I4-1", "NP_001094281", "mitochondrial amidoxime-reducing component 1" ], [ "G3V6I4-1", "NP_001094281", "MOCO sulphurase C-terminal domain containing 1" ], [ "P12749-1", "NP_001291463", "60S ribosomal protein L26" ], [ "O08812-1", "XP_006257121", "cationic amino acid transporter 3 isoform X1" ], [ "P39020-1", "NP_058845", "homeobox protein MOX-2" ], [ "P39020-1", "NP_058845", "growth arrest-specific homeobox; mesenchyme homeo box 2 (growth arrest-specific homeo box)" ], [ "A0A0G2K0T8-1", "NP_001128321", "protein FAM25A" ], [ "Q6P6Q9-1", "XP_006256483", "calcium uptake protein 1, mitochondrial isoform X2" ], [ "P28648-1", "XP_008763246", "CD63 antigen isoform X1" ], [ "D3ZVR6-1", "NP_001099870", "SMC5-SMC6 complex localization factor protein 1" ], [ "D3ZVR6-1", "NP_001099870", "ankyrin repeat domain-containing protein 32; ankyrin repeat domain 32" ], [ "P01237-1", "NP_036761", "prolactin precursor" ], [ "P01237-1", "NP_036761", "prolactin family 1, subfamily a, member 1; growth hormone a1" ], [ "P01230-1", "NP_001029147", "lutropin subunit beta isoform 2 precursor" ], [ "P01230-1", "NP_001029147", "lutropin subunit beta; LH-B; LSH-B; LSH-beta; lutropin beta chain; luteinizing hormone beta polypeptide; Luteinizing hormone (lutropin) subunit beta; luteinizing hormone beta subunit" ], [ "P09006-1", "NP_113719", "serine protease inhibitor A3N precursor" ], [ "P09006-1", "NP_113719", "serine protease inhibitor 2c; serine protease inhibitor A3N; serpina3n-like protein; SPI-3; serpin A3N; serine protease inhibitor 3; contrapsin-like protease inhibitor 6" ], [ "M0RB75-1", "NP_001037701", "lysine-specific demethylase 4B isoform 1" ], [ "M0RB75-1", "NP_001037701", "lysine-specific demethylase 4B; lysine (K)-specific demethylase 4B" ], [ "Q9JHY1-1", "NP_446248", "junctional adhesion molecule A precursor" ], [ "Q9JHY1-1", "NP_446248", "junctional adhesion molecule A; JAM-1; JAM-A; junctional adhesion molecule 1" ], [ "Q9JHY2-1", "NP_075237", "sideroflexin-3" ], [ "Q9JHY2-1", "NP_075237", "tricarboxylate carrier-like protein; solute carrier family 64 member 3" ], [ "Q9JHY7-1", "NP_071610", "baculoviral IAP repeat-containing protein 5" ], [ "Q9JHY7-1", "NP_071610", "apoptosis inhibitor survivin" ], [ "E9PU34-1", "XP_006227896", "required for meiotic nuclear division protein 1 homolog isoform X1" ], [ "Q02874-1", "NP_058878", "core histone macro-H2A.1" ], [ "Q02874-1", "NP_058878", "H2A.y; H2A/y; mH2A1; histone macroH2A1; H2A histone family, member Y" ], [ "P08699-1", "NP_114020", "galectin-3" ], [ "P08699-1", "NP_114020", "lectin, galactose binding, soluble 3; CBP 35; lectin L-29; 35 kDa lectin; mac-2 antigen; igE-binding protein; laminin-binding protein; galactose-specific lectin 3; carbohydrate-binding protein 35; IgE binding protein; lectin, galactoside-binding, soluble, 3; lectin galactoside-binding soluble 3 protein; epsilon BP" ], [ "P56558-1", "NP_058803", "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform 1" ], [ "P56558-1", "NP_058803", "UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit; O-GlcNAc transferase subunit p110; O-linked N-acetylglucosamine transferase 110 kDa subunit; O linked N-acetylglucosamine transferase; UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase; O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)" ], [ "P08011-1", "NP_599176", "microsomal glutathione S-transferase 1" ], [ "P08011-1", "NP_599176", "microsomal GST-1; microsomal GST-I" ], [ "Q8CJ58-1", "NP_695211", "clarin-1" ], [ "Q8CJ58-1", "NP_695211", "usher syndrome type-3 protein homolog; Usher syndrome 3A homolog; Usher syndrome type III A" ], [ "Q99JD4-1", "NP_446174", "CLIP-associating protein 2" ], [ "Q99JD1-1", "NP_599218", "beta-defensin 126 precursor" ], [ "Q99JD1-1", "NP_599218", "beta-defensin 22; 2D6 glycoprotein; E-3 epididymal fluid protein; beta-defensin 126" ] ] }, "readme": "Name\n - Rat Protein Names (NCBI RefSeq)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2020-03-15T13:32:44.009025\n\nModified on\n - 2022-01-13T16:12:12.828698\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Rat Protein Names (NCBI RefSeq) dataset contains rat [taxid:10116] protein names (primary and other alternative/synonym protein names) from NCBI RefSeq database. The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen\n\nDescription Domain\n Keywords\n - protein names\n - NCBI RefSeq\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the protein names and then maps the NCBI RefSeq accesion to the UniProtKB Canonical accessions\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: rat_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_refseq.csv\n Output Subdomain\n Name: rat_protein_proteinnames_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_proteinnames_refseq.csv\n Name: rat_protein_proteinnames_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_proteinnames_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"14899\"\n Name: \"refseq_ac\"\n Description: \"Accession in the NCBI RefSeq database\"\n Unique Values: \"16083\"\n Name: \"refseq_protein_name\"\n Description: \"Name of the protein in NCBI RefSeq database\"\n Unique Values: \"27416\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_protein_proteinnames_refseq.csv" }