{
    "bcoid": "GLY_000266",
    "title": "Rat UniProtKB Xref Bgee",
    "description": "The Rat UniProtKB Xref Bgee dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced ...",
    "filename": "rat_protein_xref_bgee.csv",
    "filetype": "csv",
    "categories": {
        "species": "Rattus norvegicus",
        "molecule": "Protein",
        "tags": "Bgee cross-references",
        "file_type": "csv",
        "status": "Reviewed",
        "scope": "internal"
    },
    "minitable": {
        "content": [
            [
                "D3ZB44-1...",
                "protein_xref..."
            ],
            [
                "D3ZXJ3-1...",
                "protein_xref..."
            ]
        ],
        "headers": [
            "uniprotkb_ca...",
            "xref_key..."
        ],
        "colwidth": [
            "40%",
            "20%"
        ]
    },
    "sampledata": {
        "type": "table",
        "data": [
            [
                {
                    "type": "string",
                    "label": "uniprotkb_canonical_ac"
                },
                {
                    "type": "string",
                    "label": "xref_key"
                },
                {
                    "type": "string",
                    "label": "xref_id"
                },
                {
                    "type": "string",
                    "label": "xref_label"
                }
            ],
            [
                "D3ZB44-1",
                "protein_xref_bgee",
                "ENSRNOG00000027436",
                "Expressed in liver and 19 other tissues"
            ],
            [
                "D3ZXJ3-1",
                "protein_xref_bgee",
                "ENSRNOG00000015322",
                "Expressed in thymus and 20 other tissues"
            ],
            [
                "D3ZB49-1",
                "protein_xref_bgee",
                "ENSRNOG00000009358",
                "Expressed in quadriceps femoris and 20 other tissues"
            ],
            [
                "D3ZB48-1",
                "protein_xref_bgee",
                "ENSRNOG00000026226",
                "Expressed in testis and 20 other tissues"
            ],
            [
                "Q5RJZ1-1",
                "protein_xref_bgee",
                "ENSRNOG00000027513",
                "Expressed in liver and 21 other tissues"
            ],
            [
                "Q04462-1",
                "protein_xref_bgee",
                "ENSRNOG00000000867",
                "Expressed in testis and 22 other tissues"
            ],
            [
                "A0A0G2JVG5-1",
                "protein_xref_bgee",
                "ENSRNOG00000030948",
                "Expressed in testis and 3 other tissues"
            ],
            [
                "A0A0G2JVG6-1",
                "protein_xref_bgee",
                "ENSRNOG00000053366",
                "Expressed in frontal cortex and 20 other tissues"
            ],
            [
                "Q99372-1",
                "protein_xref_bgee",
                "ENSRNOG00000001469",
                "Expressed in esophagus and 20 other tissues"
            ],
            [
                "A0A096MJY8-1",
                "protein_xref_bgee",
                "ENSRNOG00000013975",
                "Expressed in testis and 21 other tissues"
            ],
            [
                "A0A096MJY4-1",
                "protein_xref_bgee",
                "ENSRNOG00000033134",
                "Expressed in frontal cortex and 20 other tissues"
            ],
            [
                "B2GV58-1",
                "protein_xref_bgee",
                "ENSRNOG00000021133",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "A0A096MJY1-1",
                "protein_xref_bgee",
                "ENSRNOG00000046660",
                "Expressed in heart and 20 other tissues"
            ],
            [
                "A0A0G2KA92-1",
                "protein_xref_bgee",
                "ENSRNOG00000012716",
                "Expressed in spleen and 21 other tissues"
            ],
            [
                "P56558-1",
                "protein_xref_bgee",
                "ENSRNOG00000003359",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "A0A096MJY2-1",
                "protein_xref_bgee",
                "ENSRNOG00000011006",
                "Expressed in quadriceps femoris and 14 other tissues"
            ],
            [
                "A0A0G2K4P4-1",
                "protein_xref_bgee",
                "ENSRNOG00000011376",
                "Expressed in testis and 21 other tissues"
            ],
            [
                "Q5RJK6-1",
                "protein_xref_bgee",
                "ENSRNOG00000012375",
                "Expressed in kidney and 21 other tissues"
            ],
            [
                "P01946-1",
                "protein_xref_bgee",
                "ENSRNOG00000029886",
                "Expressed in spleen and 20 other tissues"
            ],
            [
                "Q63358-1",
                "protein_xref_bgee",
                "ENSRNOG00000016256",
                "Expressed in spleen and 21 other tissues"
            ],
            [
                "Q5M9G9-1",
                "protein_xref_bgee",
                "ENSRNOG00000052477",
                "Expressed in duodenum and 21 other tissues"
            ],
            [
                "P30936-1",
                "protein_xref_bgee",
                "ENSRNOG00000007332",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "P02767-1",
                "protein_xref_bgee",
                "ENSRNOG00000016275",
                "Expressed in liver and 21 other tissues"
            ],
            [
                "D4A4W8-1",
                "protein_xref_bgee",
                "ENSRNOG00000012229",
                "Expressed in testis and 8 other tissues"
            ],
            [
                "D4A4W9-1",
                "protein_xref_bgee",
                "ENSRNOG00000038045",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "D4A4W0-1",
                "protein_xref_bgee",
                "ENSRNOG00000048005",
                "Expressed in adult mammalian kidney and 1 other tissue"
            ],
            [
                "D4A4W1-1",
                "protein_xref_bgee",
                "ENSRNOG00000012369",
                "Expressed in lung and 20 other tissues"
            ],
            [
                "D4A4W2-1",
                "protein_xref_bgee",
                "ENSRNOG00000038055",
                "Expressed in testis and 17 other tissues"
            ],
            [
                "F7EN52-1",
                "protein_xref_bgee",
                "ENSRNOG00000007147",
                "Expressed in frontal cortex and 19 other tissues"
            ],
            [
                "D4A4W4-1",
                "protein_xref_bgee",
                "ENSRNOG00000027319",
                "Expressed in esophagus and 19 other tissues"
            ],
            [
                "D4A4W5-1",
                "protein_xref_bgee",
                "ENSRNOG00000003781",
                "Expressed in duodenum and 17 other tissues"
            ],
            [
                "D4A4W6-1",
                "protein_xref_bgee",
                "ENSRNOG00000012314",
                "Expressed in brain and 22 other tissues"
            ],
            [
                "D4A4W7-1",
                "protein_xref_bgee",
                "ENSRNOG00000011923",
                "Expressed in female gonad and 20 other tissues"
            ],
            [
                "G3V6I3-1",
                "protein_xref_bgee",
                "ENSRNOG00000004091",
                "Expressed in brain and 20 other tissues"
            ],
            [
                "P21932-1",
                "protein_xref_bgee",
                "ENSRNOG00000003999",
                "Expressed in brain and 21 other tissues"
            ],
            [
                "Q8K4K5-1",
                "protein_xref_bgee",
                "ENSRNOG00000003948",
                "Expressed in brain and 20 other tissues"
            ],
            [
                "Q4L0E8-1",
                "protein_xref_bgee",
                "ENSRNOG00000003959",
                "Expressed in spleen and 21 other tissues"
            ],
            [
                "G3V6I6-1",
                "protein_xref_bgee",
                "ENSRNOG00000004143",
                "Expressed in skeletal muscle tissue and 20 other tissues"
            ],
            [
                "A0A0G2K5E4-1",
                "protein_xref_bgee",
                "ENSRNOG00000003855",
                "Expressed in skeletal muscle tissue and 20 other tissues"
            ],
            [
                "G3V6I4-1",
                "protein_xref_bgee",
                "ENSRNOG00000004101",
                "Expressed in liver and 20 other tissues"
            ],
            [
                "P12749-1",
                "protein_xref_bgee",
                "ENSRNOG00000004214",
                "Expressed in thymus and 20 other tissues"
            ],
            [
                "O08812-1",
                "protein_xref_bgee",
                "ENSRNOG00000004133",
                "Expressed in brain and 18 other tissues"
            ],
            [
                "P11980-1",
                "protein_xref_bgee",
                "ENSRNOG00000011329",
                "Expressed in skeletal muscle tissue and 21 other tissues"
            ],
            [
                "A0A0G2K0T8-1",
                "protein_xref_bgee",
                "ENSRNOG00000055025",
                "Expressed in esophagus and 17 other tissues"
            ],
            [
                "A0A0G2K0T4-1",
                "protein_xref_bgee",
                "ENSRNOG00000059654",
                "Expressed in frontal cortex and 17 other tissues"
            ],
            [
                "Q6P6Q9-1",
                "protein_xref_bgee",
                "ENSRNOG00000043436",
                "Expressed in lung and 20 other tissues"
            ],
            [
                "Q63544-1",
                "protein_xref_bgee",
                "ENSRNOG00000058006",
                "Expressed in esophagus and 22 other tissues"
            ],
            [
                "A0A0G2K0T7-1",
                "protein_xref_bgee",
                "ENSRNOG00000049137",
                "Expressed in testis and 20 other tissues"
            ],
            [
                "P28648-1",
                "protein_xref_bgee",
                "ENSRNOG00000007650",
                "Expressed in adult mammalian kidney and 21 other tissues"
            ],
            [
                "Q5U1W2-1",
                "protein_xref_bgee",
                "ENSRNOG00000042094",
                "Expressed in duodenum and 21 other tissues"
            ],
            [
                "D3ZVR6-1",
                "protein_xref_bgee",
                "ENSRNOG00000040279",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "A0A0G2K1A3-1",
                "protein_xref_bgee",
                "ENSRNOG00000008398",
                "Expressed in thymus and 12 other tissues"
            ],
            [
                "A0A0G2K1A1-1",
                "protein_xref_bgee",
                "ENSRNOG00000060956",
                "Expressed in pancreas and 22 other tissues"
            ],
            [
                "P01237-1",
                "protein_xref_bgee",
                "ENSRNOG00000017374",
                "Expressed in Ammon's horn and 2 other tissues"
            ],
            [
                "P33124-1",
                "protein_xref_bgee",
                "ENSRNOG00000026745",
                "Expressed in frontal cortex and 20 other tissues"
            ],
            [
                "P01230-1",
                "protein_xref_bgee",
                "ENSRNOG00000047040",
                "Expressed in testis and 21 other tissues"
            ],
            [
                "Q6MG12-1",
                "protein_xref_bgee",
                "ENSRNOG00000000812",
                "Expressed in brain and 22 other tissues"
            ],
            [
                "M0RB72-1",
                "protein_xref_bgee",
                "ENSRNOG00000049162",
                "Expressed in jejunum and 18 other tissues"
            ],
            [
                "D4A781-1",
                "protein_xref_bgee",
                "ENSRNOG00000010989",
                "Expressed in testis and 20 other tissues"
            ],
            [
                "M0RB75-1",
                "protein_xref_bgee",
                "ENSRNOG00000049221",
                "Expressed in brain and 21 other tissues"
            ],
            [
                "A0A0G2K8D0-1",
                "protein_xref_bgee",
                "ENSRNOG00000048771",
                "Expressed in lung and 21 other tissues"
            ],
            [
                "Q9JHY1-1",
                "protein_xref_bgee",
                "ENSRNOG00000004414",
                "Expressed in lung and 21 other tissues"
            ],
            [
                "P33568-1",
                "protein_xref_bgee",
                "ENSRNOG00000016029",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "P31646-1",
                "protein_xref_bgee",
                "ENSRNOG00000012876",
                "Expressed in liver and 17 other tissues"
            ],
            [
                "E9PU34-1",
                "protein_xref_bgee",
                "ENSRNOG00000019501",
                "Expressed in liver and 22 other tissues"
            ],
            [
                "Q02874-1",
                "protein_xref_bgee",
                "ENSRNOG00000011523",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "P08699-1",
                "protein_xref_bgee",
                "ENSRNOG00000010645",
                "Expressed in jejunum and 21 other tissues"
            ],
            [
                "P56558-1",
                "protein_xref_bgee",
                "ENSRNOG00000003359",
                "Expressed in thymus and 21 other tissues"
            ],
            [
                "P08011-1",
                "protein_xref_bgee",
                "ENSRNOG00000007743",
                "Expressed in liver and 21 other tissues"
            ],
            [
                "Q8CJ58-1",
                "protein_xref_bgee",
                "ENSRNOG00000042477",
                "Expressed in brain and 5 other tissues"
            ],
            [
                "P54690-1",
                "protein_xref_bgee",
                "ENSRNOG00000015514",
                "Expressed in brain and 22 other tissues"
            ],
            [
                "Q99JD4-1",
                "protein_xref_bgee",
                "ENSRNOG00000009161",
                "Expressed in cerebellum and 21 other tissues"
            ],
            [
                "P07727-1",
                "protein_xref_bgee",
                "ENSRNOG00000013588",
                "Expressed in cerebellum and 9 other tissues"
            ],
            [
                "Q99JD2-1",
                "protein_xref_bgee",
                "ENSRNOG00000014973",
                "Expressed in testis and 22 other tissues"
            ],
            [
                "Q7TP40-1",
                "protein_xref_bgee",
                "ENSRNOG00000028411",
                "Expressed in cerebellum and 20 other tissues"
            ],
            [
                "P83748-1",
                "protein_xref_bgee",
                "ENSRNOG00000033266",
                "Expressed in duodenum and 15 other tissues"
            ],
            [
                "P18508-1",
                "protein_xref_bgee",
                "ENSRNOG00000003241",
                "Expressed in brain and 14 other tissues"
            ],
            [
                "P20420-1",
                "protein_xref_bgee",
                "ENSRNOG00000013610",
                "Expressed in brain and 14 other tissues"
            ],
            [
                "A0A0G2JTB2-1",
                "protein_xref_bgee",
                "ENSRNOG00000051232",
                "Expressed in liver and 22 other tissues"
            ],
            [
                "M0R8G6-1",
                "protein_xref_bgee",
                "ENSRNOG00000060408",
                "Expressed in spleen and 13 other tissues"
            ],
            [
                "F1M9T2-1",
                "protein_xref_bgee",
                "ENSRNOG00000010824",
                "Expressed in female gonad and 20 other tissues"
            ],
            [
                "M0R8G5-1",
                "protein_xref_bgee",
                "ENSRNOG00000049067",
                "Expressed in frontal cortex and 17 other tissues"
            ],
            [
                "Q02293-1",
                "protein_xref_bgee",
                "ENSRNOG00000007660",
                "Expressed in cerebellum and 21 other tissues"
            ],
            [
                "D3ZGR6-1",
                "protein_xref_bgee",
                "ENSRNOG00000028581",
                "Expressed in testis and 21 other tissues"
            ]
        ]
    },
    "readme": "Name\n   - Rat UniProtKB Xref Bgee\n\nVersion\n   - 1.11.2\n\nCreated on\n  - 2019-09-06T14:06:38.992721\n\nModified on\n   - 2020-04-10T12:07:42.440257\n\nCreated by\n   - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n   - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n   - \n\nUsability Domain\n   - The Rat UniProtKB Xref Bgee dataset contains rat [taxid:10116] UniProtKB canonical accessions cross-referenced to Bgee database accessions/identifiers. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen.\n   -  Bgee is a database to retrieve and compare gene expression patterns in multiple animal species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data) and from multiple data sets.\n\nDescription Domain\n   Keywords\n   - gene expression\n   - Bgee\n   - cross-reference\n\n   Pipeline Steps\n   - Step-1: The script loads the UniProtKB canonical accessions that are cross-referenced to Bgee database accessions/identifiers from the triplestore containing triples from nt file and extracts the data as a csv dataset\n\nExecution Domain\n   Scripts   - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n   Software Prerequisites\n      Name: Python\n      Version: 2.7.5\n      URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n   Input Subdomain\n      Name: uniprot-proteome-rattus-norvegicus.nt\n      URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-rattus-norvegicus.nt\n   Output Subdomain\n      Name: rat_protein_xref_bgee.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_bgee.csv\n      Name: rat_protein_xref_bgee.stat.csv\n      URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_protein_xref_bgee.stat.csv\n\nFields\n      Name: \"uniprotkb_canonical_ac\"\n     Description: \"\"\n      Unique Values: \"20189\"\n      Name: \"xref_key\"\n     Description: \"Source key associated to the  xref_id\"\n      Unique Values: \"1\"\n      Name: \"xref_id\"\n     Description: \"ID of the X-ref\"\n      Unique Values: \"20329\"\n      Name: \"xref_label\"\n     Description: \"Label/Name associated with x-ref\"\n      Unique Values: \"475\"",
    "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_protein_xref_bgee.csv"
}