{ "bcoid": "GLY_000256", "title": "Human Protein Citations (RefSeq)", "description": "The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped ...", "filename": "human_protein_citations_refseq.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Citations", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P0C7P3-1...", "SLFN14 mutat..." ], [ "Q8N7H5-1...", "SUMO Modific..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "P0C7P3-1", "SLFN14 mutations underlie thrombocytopenia with excessive bleeding and platelet secretion defects.", "The Journal of clinical investigation", "2015 Sep", "Fletcher SJ, Johnson B, Lowe GC, Bem D, Drake S, Lordkipanidze M, Guiu IS, Dawood B, Rivera J, Simpson MA, Daly ME, Motwani J, Collins PW, Watson SP, Morgan NV", "protein_xref_pubmed", "26280575", "protein_xref_refseq", "NP_001123292" ], [ "Q8N7H5-1", "SUMO Modification of PAF1/PD2 Enables PML Interaction and Promotes Radiation Resistance in Pancreatic Ductal Adenocarcinoma.", "Molecular and cellular biology", "2021 Nov 22", "Rauth S, Karmakar S, Shah A, Seshacharyulu P, Nimmakayala RK, Ganguly K, Bhatia R, Muniyan S, Kumar S, Dutta S, Lin C, Datta K, Batra SK, Ponnusamy MP", "protein_xref_pubmed", "34570619", "protein_xref_refseq", "NP_001243755" ], [ "Q9BVV6-1", "The CP110-interacting proteins Talpid3 and Cep290 play overlapping and distinct roles in cilia assembly.", "The Journal of cell biology", "2014 Jan 20", "Kobayashi T, Kim S, Lin YC, Inoue T, Dynlacht BD", "protein_xref_pubmed", "24421332", "protein_xref_refseq", "NP_001231118" ], [ "A8TX70-1", "RNAseq-Based Prioritization Revealed COL6A5, COL8A1, COL10A1 and MIR146A as Common and Differential Susceptibility Biomarkers for Psoriasis and Psoriatic Arthritis: Confirmation from Genotyping Analysis of 1417 Italian Subjects.", "International journal of molecular sciences", "2020 Apr 15", "Caputo V, Strafella C, Termine A, Campione E, Bianchi L, Novelli G, Giardina E, Cascella R", "protein_xref_pubmed", "32326527", "protein_xref_refseq", "NP_001265227" ], [ "O75953-3", "Critical role of zebrafish dnajb5 in myocardial proliferation and regeneration.", "Journal of genetics and genomics = Yi chuan xue bao", "2020 Aug", "Pang M, Xiong C, Xiao C, Du J, Zheng L, Bai L, Zhu X, Xiong JW", "protein_xref_pubmed", "33191150", "protein_xref_refseq", "NP_001128476" ], [ "Q8N6U8-1", "Pre-B-cell leukemia homeobox 1 (PBX1) shows functional and possible genetic association with bone mineral density variation.", "Human molecular genetics", "2009 Feb 15", "Cheung CL, Chan BY, Chan V, Ikegawa S, Kou I, Ngai H, Smith D, Luk KD, Huang QY, Mori S, Sham PC, Kung AW", "protein_xref_pubmed", "19064610", "protein_xref_refseq", "NP_001254538" ], [ "O60609-1", "Expression of GFRalpha3 correlates with tumor progression and promotes cell metastasis in urothelial carcinoma.", "Minerva urologica e nefrologica = The Italian journal of urology and nephrology", "2018 Feb", "Yan Y, Li MN, Yang B, Geng J, Zheng JH, Yao XD", "protein_xref_pubmed", "28651425", "protein_xref_refseq", "NP_001487" ], [ "Q92824-1", "Osteopontin as a novel substrate for the proprotein convertase 5/6 (PCSK5) in bone.", "Bone", "2018 Feb", "Hoac B, Susan-Resiga D, Essalmani R, Marcinkiweicz E, Seidah NG, McKee MD", "protein_xref_pubmed", "29126984", "protein_xref_refseq", "NP_001177411" ], [ "O14684-1", "Microsomal prostaglandin E synthase-1 is a critical factor in dopaminergic neurodegeneration in Parkinson's disease.", "Neurobiology of disease", "2019 Apr", "Ikeda-Matsuo Y, Miyata H, Mizoguchi T, Ohama E, Naito Y, Uematsu S, Akira S, Sasaki Y, Tanabe M", "protein_xref_pubmed", "30423474", "protein_xref_refseq", "NP_004869" ], [ "P49368-1", "CCT3 suppression prompts apoptotic machinery through oxidative stress and energy deprivation in breast and prostate cancers.", "Free radical biology & medicine", "2021 Mar", "Temiz E, Koyuncu I, Sahin E", "protein_xref_pubmed", "33508424", "protein_xref_refseq", "NP_001008800" ], [ "P62081-1", "Kinase PIM1 promotes prostate cancer cell growth via c-Myc-RPS7-driven ribosomal stress.", "Carcinogenesis", "2019 Mar 12", "Zhang C, Qie Y, Yang T, Wang L, Du E, Liu Y, Xu Y, Qiao B, Zhang Z", "protein_xref_pubmed", "30247545", "protein_xref_refseq", "NP_001002" ], [ "Q14978-1", "Nucleolar TRF2 attenuated nucleolus stress-induced HCC cell-cycle arrest by altering rRNA synthesis.", "Cell death & disease", "2018 May 1", "Yuan F, Xu C, Li G, Tong T", "protein_xref_pubmed", "29725012", "protein_xref_refseq", "NP_001271317" ], [ "P60468-1", "Sec61beta facilitates the maintenance of endoplasmic reticulum homeostasis by associating microtubules.", "Protein & cell", "2018 Jul", "Zhu Y, Zhang G, Lin S, Shi J, Zhang H, Hu J", "protein_xref_pubmed", "29168059", "protein_xref_refseq", "NP_006799" ], [ "P53004-1", "Reduced Biliverdin Reductase-A Expression in Visceral Adipose Tissue is Associated with Adipocyte Dysfunction and NAFLD in Human Obesity.", "International journal of molecular sciences", "2020 Nov 29", "Ceccarelli V, Barchetta I, Cimini FA, Bertoccini L, Chiappetta C, Capoccia D, Carletti R, Di Cristofano C, Silecchia G, Fontana M, Leonetti F, Lenzi A, Baroni MG, Barone E, Cavallo MG", "protein_xref_pubmed", "33260451", "protein_xref_refseq", "NP_000703" ], [ "Q6IA69-1", "Bi-allelic Mutations in NADSYN1 Cause Multiple Organ Defects and Expand the Genotypic Spectrum of Congenital NAD Deficiency Disorders.", "American journal of human genetics", "2020 Jan 2", "Szot JO, Campagnolo C, Cao Y, Iyer KR, Cuny H, Drysdale T, Flores-Daboub JA, Bi W, Westerfield L, Liu P, Leung TN, Choy KW, Chapman G, Xiao R, Siu VM, Dunwoodie SL", "protein_xref_pubmed", "31883644", "protein_xref_refseq", "NP_060631" ], [ "P28290-1", "Deregulated expression of KRAP, a novel gene encoding actin-interacting protein, in human colon cancer cells.", "Journal of human genetics", "2004", "Inokuchi J, Komiya M, Baba I, Naito S, Sasazuki T, Shirasawa S", "protein_xref_pubmed", "14673706", "protein_xref_refseq", "NP_001274432" ], [ "P33681-1", "Cryptic association of B7-2 molecules and its implication for clustering.", "Protein science : a publication of the Protein Society", "2021 Sep", "Lankipalli S, H S MS, Selvam D, Samanta D, Nair D, Ramagopal UA", "protein_xref_pubmed", "34191384", "protein_xref_refseq", "NP_005182" ], [ "Q99956-1", "Expression of Dual-Specificity Phosphatase 9 in Placenta and Its Relationship with Gestational Diabetes Mellitus.", "Journal of diabetes research", "2019", "Wei Q, Pu X, Zhang L, Xu Y, Duan M, Wang Y", "protein_xref_pubmed", "31772940", "protein_xref_refseq", "NP_001305432" ], [ "Q9H267-1", "Comparative evolutionary analysis of VPS33 homologues: genetic and functional insights.", "Human molecular genetics", "2005 May 15", "Gissen P, Johnson CA, Gentle D, Hurst LD, Doherty AJ, O'Kane CJ, Kelly DA, Maher ER", "protein_xref_pubmed", "15790593", "protein_xref_refseq", "NP_001276077" ], [ "Q7Z7A4-1", "Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy.", "Science signaling", "2015 Apr 7", "So J, Pasculescu A, Dai AY, Williton K, James A, Nguyen V, Creixell P, Schoof EM, Sinclair J, Barrios-Rodiles M, Gu J, Krizus A, Williams R, Olhovsky M, Dennis JW, Wrana JL, Linding R, Jorgensen C, Pawson T, Colwill K", "protein_xref_pubmed", "25852190", "protein_xref_refseq", "NP_001276029" ], [ "P58062-1", "ECRG2, a novel candidate of tumor suppressor gene in the esophageal carcinoma, interacts directly with metallothionein 2A and links to apoptosis.", "Biochemical and biophysical research communications", "2003 Mar 21", "Cui Y, Wang J, Zhang X, Lang R, Bi M, Guo L, Lu SH", "protein_xref_pubmed", "12646258", "protein_xref_refseq", "NP_115955" ], [ "O15547-1", "Ambulatory blood pressure is associated with polymorphic variation in P2X receptor genes.", "Hypertension (Dallas, Tex. : 1979)", "2008 Nov", "Palomino-Doza J, Rahman TJ, Avery PJ, Mayosi BM, Farrall M, Watkins H, Edwards CR, Keavney B", "protein_xref_pubmed", "18852390", "protein_xref_refseq", "NP_001153026" ], [ "P21580-1", "A Previously Undiscovered Circular RNA, circTNFAIP3, and Its Role in Coronavirus Replication.", "mBio", "2021 Dec 21", "Du L, Wang X, Liu J, Li J, Wang S, Lei J, Zhou J, Gu J", "protein_xref_pubmed", "34781747", "protein_xref_refseq", "NP_001257436" ], [ "Q9NR71-1", "Neutral ceramidase: Advances in mechanisms, cell regulation, and roles in cancer.", "Advances in biological regulation", "2019 Jan", "Coant N, Hannun YA", "protein_xref_pubmed", "30389354", "protein_xref_refseq", "NP_001137446" ], [ "Q9H1C4-1", "Assessing the function of human UNC-93B in Toll-like receptor signaling and major histocompatibility complex II response.", "Human immunology", "2007 Nov", "Koehn J, Huesken D, Jaritz M, Rot A, Zurini M, Dwertmann A, Beutler B, Korthauer U", "protein_xref_pubmed", "18082565", "protein_xref_refseq", "NP_112192" ], [ "Q86SJ2-1", "Amigo2-upregulation in Tumour Cells Facilitates Their Attachment to Liver Endothelial Cells Resulting in Liver Metastases.", "Scientific reports", "2017 Mar 8", "Kanda Y, Osaki M, Onuma K, Sonoda A, Kobayashi M, Hamada J, Nicolson GL, Ochiya T, Okada F", "protein_xref_pubmed", "28272394", "protein_xref_refseq", "NP_001137140" ], [ "Q96K19-1", "Bi-allelic variants in RNF170 are associated with hereditary spastic paraplegia.", "Nature communications", "2019 Oct 21", "Wagner M, Osborn DPS, Gehweiler I, Nagel M, Ulmer U, Bakhtiari S, Amouri R, Boostani R, Hentati F, Hockley MM, Holbling B, Schwarzmayr T, Karimiani EG, Kernstock C, Maroofian R, Muller-Felber W, Ozkan E, Padilla-Lopez S, Reich S, Reichbauer J, Darvish H, Shahmohammadibeni N, Tafakhori A, Vill K, Zuchner S, Kruer MC, Winkelmann J, Jamshidi Y, Schule R", "protein_xref_pubmed", "31636353", "protein_xref_refseq", "NP_001153695" ], [ "Q9NUL3-1", "STAU2 protein level is controlled by caspases and the CHK1 pathway and regulates cell cycle progression in the non-transformed hTERT-RPE1 cells.", "BMC molecular and cell biology", "2021 Mar 4", "Conde L, Gonzalez Quesada Y, Bonnet-Magnaval F, Beaujois R, DesGroseillers L", "protein_xref_pubmed", "33663378", "protein_xref_refseq", "NP_001157854" ], [ "O75888-1", "Keeping up with the stress of antibody production: BAFF and APRIL maintain memory plasma cells.", "Current opinion in immunology", "2021 Aug", "Cornelis R, Chang HD, Radbruch A", "protein_xref_pubmed", "34303157", "protein_xref_refseq", "NP_001185551" ], [ "P55290-1", "T-cadherin protects endothelial cells from oxidative stress-induced apoptosis.", "FASEB journal : official publication of the Federation of American Societies for Experimental Biology", "2005 Oct", "Joshi MB, Philippova M, Ivanov D, Allenspach R, Erne P, Resink TJ", "protein_xref_pubmed", "16099944", "protein_xref_refseq", "NP_001207418" ], [ "P12268-1", "Genetic variants in the glucocorticoid pathway genes and birth weight.", "Archives of gynecology and obstetrics", "2021 Feb", "Schneider MO, Hubner T, Pretscher J, Goecke TW, Schwitulla J, Haberle L, Kornhuber J, Ekici AB, Beckmann MW, Fasching PA, Schwenke E", "protein_xref_pubmed", "32886236", "protein_xref_refseq", "NP_000875" ], [ "Q9NY12-1", "SUMOylation- and GAR1-Dependent Regulation of Dyskerin Nuclear and Subnuclear Localization.", "Molecular and cellular biology", "2021 Mar 24", "MacNeil DE, Lambert-Lanteigne P, Qin J, McManus FP, Bonneil E, Thibault P, Autexier C", "protein_xref_pubmed", "33526451", "protein_xref_refseq", "NP_061856" ], [ "Q6UQ28-1", "Identification of Plet-1 as a specific marker of early thymic epithelial progenitor cells.", "Proceedings of the National Academy of Sciences of the United States of America", "2008 Jan 22", "Depreter MG, Blair NF, Gaskell TL, Nowell CS, Davern K, Pagliocca A, Stenhouse FH, Farley AM, Fraser A, Vrana J, Robertson K, Morahan G, Tomlinson SR, Blackburn CC", "protein_xref_pubmed", "18195351", "protein_xref_refseq", "NP_001138496" ], [ "Q0VDF9-1", "Induction of HSPA4 and HSPA14 by NBS1 overexpression contributes to NBS1-induced in vitro metastatic and transformation activity.", "Journal of biomedical science", "2011 Jan 6", "Wu CY, Lin CT, Wu MZ, Wu KJ", "protein_xref_pubmed", "21208456", "protein_xref_refseq", "NP_057383" ], [ "P09601-1", "Forensic significance of intracardiac heme oxygenase-1 expression in acute myocardial ischemia.", "Scientific reports", "2021 Nov 8", "Kuninaka Y, Ishida Y, Nosaka M, Ishigami A, Taruya A, Shimada E, Kimura A, Yamamoto H, Ozaki M, Furukawa F, Kondo T", "protein_xref_pubmed", "34750390", "protein_xref_refseq", "NP_002124" ], [ "Q9C0G0-1", "Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.", "American journal of human genetics", "2009 Nov", "Talmud PJ, Drenos F, Shah S, Shah T, Palmen J, Verzilli C, Gaunt TR, Pallas J, Lovering R, Li K, Casas JP, Sofat R, Kumari M, Rodriguez S, Johnson T, Newhouse SJ, Dominiczak A, Samani NJ, Caulfield M, Sever P, Stanton A, Shields DC, Padmanabhan S, Melander O, Hastie C, Delles C, Ebrahim S, Marmot MG, Smith GD, Lawlor DA, Munroe PB, Day IN, Kivimaki M, Whittaker J, Humphries SE, Hingorani AD", "protein_xref_pubmed", "19913121", "protein_xref_refseq", "NP_001139661" ], [ "Q9BPZ7-1", "Sin1 (Stress-Activated Protein Kinase-Interacting Protein) Regulates Ischemia-Induced Microthrombosis Through Integrin alphaIIbbeta3-Mediated Outside-In Signaling and Hypoxia Responses in Platelets.", "Arteriosclerosis, thrombosis, and vascular biology", "2018 Dec", "Xu Y, Ouyang X, Yan L, Zhang M, Hu Z, Gu J, Fan X, Zhang L, Zhang J, Xue S, Chen G, Su B, Liu J", "protein_xref_pubmed", "30571167", "protein_xref_refseq", "NP_001006618" ], [ "Q9HBG4-1", "Clinical and genetic analysis of distal renal tubular acidosis in three Chinese children.", "Renal failure", "2018 Nov", "Liu J, Shen Q, Li G, Zhai Y, Fang X, Xu H", "protein_xref_pubmed", "30230413", "protein_xref_refseq", "NP_065683" ], [ "Q04727-1", "Polymorphisms of TGFB1, TLE4 and MUC22 are associated with childhood asthma in Chinese population.", "Allergologia et immunopathologia", "2017 Sep - Oct", "Chen JB, Zhang J, Hu HZ, Xue M, Jin YJ", "protein_xref_pubmed", "28262390", "protein_xref_refseq", "NP_001269677" ], [ "Q8NG31-1", "Characterization of the MLL partner gene AF15q14 involved in t(11;15)(q23;q14).", "Oncogene", "2003 Mar 6", "Kuefer MU, Chinwalla V, Zeleznik-Le NJ, Behm FG, Naeve CW, Rakestraw KM, Mukatira ST, Raimondi SC, Morris SW", "protein_xref_pubmed", "12618768", "protein_xref_refseq", "NP_653091" ], [ "Q96P63-1", "Deciphering the three-domain architecture in schlafens and the structures and roles of human schlafen12 and serpinB12 in transcriptional regulation.", "Journal of molecular graphics & modelling", "2019 Jul", "Chen J, Kuhn LA", "protein_xref_pubmed", "31026779", "protein_xref_refseq", "NP_001294857" ], [ "Q9UIH9-1", "Transcription factor KLF15 inhibits the proliferation and migration of gastric cancer cells via regulating the TFAP2A-AS1/NISCH axis.", "Biology direct", "2021 Nov 3", "Zhao X, Chen L, Wu J, You J, Hong Q, Ye F", "protein_xref_pubmed", "34727954", "protein_xref_refseq", "NP_054798" ], [ "Q92786-1", "Prox1 is differentially localized during lens development.", "Mechanisms of development", "2002 Mar", "Duncan MK, Cui W, Oh DJ, Tomarev SI", "protein_xref_pubmed", "11850194", "protein_xref_refseq", "NP_001257545" ], [ "O76050-1", "Fe65 negatively regulates Jagged1 signaling by decreasing Jagged1 protein stability through the E3 ligase Neuralized-like 1.", "Biochimica et biophysica acta", "2015 Nov", "Lee HJ, Yoon JH, Ahn JS, Jo EH, Kim MY, Lee YC, Kim JW, Ann EJ, Park HS", "protein_xref_pubmed", "26276215", "protein_xref_refseq", "NP_004201" ], [ "O95267-1", "Dysregulated RASGRP1 expression through RUNX1 mediated transcription promotes autoimmunity.", "European journal of immunology", "2021 Feb", "Baars MJD, Douma T, Simeonov DR, Myers DR, Kulhanek K, Banerjee S, Zwakenberg S, Baltissen MP, Amini M, de Roock S, van Wijk F, Vermeulen M, Marson A, Roose JP, Vercoulen Y", "protein_xref_pubmed", "33065764", "protein_xref_refseq", "NP_001122074" ], [ "P01024-1", "Marginal zone B cells acquire dendritic cell functions by trogocytosis.", "Science (New York, N.Y.)", "2022 Feb 11", "Schriek P, Ching AC, Moily NS, Moffat J, Beattie L, Steiner TM, Hosking LM, Thurman JM, Holers VM, Ishido S, Lahoud MH, Caminschi I, Heath WR, Mintern JD, Villadangos JA", "protein_xref_pubmed", "35143312", "protein_xref_refseq", "NP_000055" ], [ "Q86YT5-1", "Human Na+ -coupled citrate transporter: primary structure, genomic organization, and transport function.", "Biochemical and biophysical research communications", "2002 Dec 6", "Inoue K, Zhuang L, Ganapathy V", "protein_xref_pubmed", "12445824", "protein_xref_refseq", "NP_001137310" ], [ "Q13239-1", "Intracellular cytoplasm-specific delivery of SH3 and SH2 domains of SLAP inhibits TcR-mediated signaling.", "Biochemical and biophysical research communications", "2015 May 8", "Kim JH, Moon JS, Yu J, Lee SK", "protein_xref_pubmed", "25800872", "protein_xref_refseq", "NP_001039021" ], [ "Q9UK53-1", "miR-24-3p promotes colon cancer progression by targeting ING1.", "Signal transduction and targeted therapy", "2020 Aug 25", "Gao Z, Zhou L, Hua S, Wu H, Luo L, Li L, Wang S, Liu Y, Zhou Z, Chen X", "protein_xref_pubmed", "32843621", "protein_xref_refseq", "NP_001254657" ], [ "Q9Y3E5-1", "Bit1-a novel regulator of astrocyte function during retinal development: proliferation, migration, and paracrine effects on vascular endothelial cell.", "Human cell", "2019 Oct", "Liu Y, Ji J, Shao W, Luo M, Ma B", "protein_xref_pubmed", "31368047", "protein_xref_refseq", "NP_001015509" ], [ "Q9NY25-1", "CLEC5A: A Promiscuous Pattern Recognition Receptor to Microbes and Beyond.", "Advances in experimental medicine and biology", "2020", "Sung PS, Chang WC, Hsieh SL", "protein_xref_pubmed", "32152943", "protein_xref_refseq", "NP_037384" ], [ "Q5BKU9-1", "Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression.", "PloS one", "2010 Sep 21", "Hendrickson SL, Lautenberger JA, Chinn LW, Malasky M, Sezgin E, Kingsley LA, Goedert JJ, Kirk GD, Gomperts ED, Buchbinder SP, Troyer JL, O'Brien SJ", "protein_xref_pubmed", "20877624", "protein_xref_refseq", "NP_001291924" ], [ "A0PJK1-1", "Functional characterisation of human SGLT-5 as a novel kidney-specific sodium-dependent sugar transporter.", "FEBS letters", "2012 Feb 3", "Grempler R, Augustin R, Froehner S, Hildebrandt T, Simon E, Mark M, Eickelmann P", "protein_xref_pubmed", "22212718", "protein_xref_refseq", "NP_001035915" ], [ "Q96L91-1", "TIP60/P400/H4K12ac Plays a Role as a Heterochromatin Back-up Skeleton in Breast Cancer.", "Cancer genomics & proteomics", "2020 Nov-Dec", "Idrissou M, Boisnier T, Sanchez A, Khoufaf FZH, Penault-Llorca F, Bignon YJ, Bernard-Gallon D", "protein_xref_pubmed", "33099470", "protein_xref_refseq", "NP_056224" ], [ "Q9HC78-1", "Prediction of gastric cancer risk: association between ZBTB20 genetic variance and gastric cancer risk in Chinese Han population.", "Bioscience reports", "2020 Sep 30", "Bai F, Xiao K", "protein_xref_pubmed", "32936247", "protein_xref_refseq", "NP_001157814" ], [ "P23582-1", "A novel variant of NPPC causes abnormal post-translational cleavage: A candidate gene for premature ovarian insufficiency.", "Maturitas", "2022 Mar", "Park JY, Go M, Lyu SW, Yoon TK, Kang KM, Kim JW, Shim SH", "protein_xref_pubmed", "35120671", "protein_xref_refseq", "NP_077720" ], [ "P19484-1", "TFEB, SIRT1, CARM1, Beclin-1 expression and PITX2 methylation in breast cancer chemoresistance: a retrospective study.", "BMC cancer", "2021 Oct 18", "Bertozzi S, Londero AP, Viola L, Orsaria M, Bulfoni M, Marzinotto S, Corradetti B, Baccarani U, Cesselli D, Cedolini C, Mariuzzi L", "protein_xref_pubmed", "34663249", "protein_xref_refseq", "NP_001161299" ], [ "O94886-1", "Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip.", "American journal of human genetics", "2009 Nov", "Talmud PJ, Drenos F, Shah S, Shah T, Palmen J, Verzilli C, Gaunt TR, Pallas J, Lovering R, Li K, Casas JP, Sofat R, Kumari M, Rodriguez S, Johnson T, Newhouse SJ, Dominiczak A, Samani NJ, Caulfield M, Sever P, Stanton A, Shields DC, Padmanabhan S, Melander O, Hastie C, Delles C, Ebrahim S, Marmot MG, Smith GD, Lawlor DA, Munroe PB, Day IN, Kivimaki M, Whittaker J, Humphries SE, Hingorani AD", "protein_xref_pubmed", "19913121", "protein_xref_refseq", "NP_055513" ], [ "Q9NRF8-1", "Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer.", "Cancer biology & therapy", "2011 Mar 15", "Tan WL, Bhattacharya B, Loh M, Balasubramanian I, Akram M, Dong D, Wong L, Thakkar B, Salto-Tellez M, Soo RA, Fichtner I, Iacopetta B, Soong R", "protein_xref_pubmed", "21378502", "protein_xref_refseq", "NP_001137474" ], [ "Q96CS7-1", "Endosomal phosphatidylserine is critical for the YAP signalling pathway in proliferating cells.", "Nature communications", "2017 Nov 1", "Matsudaira T, Mukai K, Noguchi T, Hasegawa J, Hatta T, Iemura SI, Natsume T, Miyamura N, Nishina H, Nakayama J, Semba K, Tomita T, Murata S, Arai H, Taguchi T", "protein_xref_pubmed", "29093443", "protein_xref_refseq", "NP_001253996" ], [ "Q494W8-1", "Regulation of the acetylcholine/alpha7nAChR anti-inflammatory pathway in COVID-19 patients.", "Scientific reports", "2021 Jun 4", "Courties A, Boussier J, Hadjadj J, Yatim N, Barnabei L, Pere H, Veyer D, Kerneis S, Carlier N, Pene F, Rieux-Laucat F, Charbit B, Bondet V, Duffy D, Berenbaum F, Terrier B, Sellam J", "protein_xref_pubmed", "34088975", "protein_xref_refseq", "NP_647536" ], [ "O75807-1", "An upstream open reading frame regulates translation of GADD34 during cellular stresses that induce eIF2alpha phosphorylation.", "The Journal of biological chemistry", "2009 Mar 13", "Lee YY, Cevallos RC, Jan E", "protein_xref_pubmed", "19131336", "protein_xref_refseq", "NP_055145" ], [ "O95155-1", "The MPAC domain is a novel mitotically regulated domain, removed by apoptotic protease cleavage during cell death.", "Biochemical and biophysical research communications", "2006 Sep 8", "Spinette S, Mahoney JA, Rosen A", "protein_xref_pubmed", "16870146", "protein_xref_refseq", "NP_001099032" ], [ "Q49AH0-1", "Cerebral dopamine neurotrophic factor reduces alpha-synuclein aggregation and propagation and alleviates behavioral alterations in vivo.", "Molecular therapy : the journal of the American Society of Gene Therapy", "2021 Sep 1", "Albert K, Raymundo DP, Panhelainen A, Eesmaa A, Shvachiy L, Araujo GR, Chmielarz P, Yan X, Singh A, Cordeiro Y, Palhano FL, Foguel D, Luk KC, Domanskyi A, Voutilainen MH, Huttunen HJ, Outeiro TF, Saarma M, Almeida MS, Airavaara M", "protein_xref_pubmed", "33940158", "protein_xref_refseq", "NP_001025125" ], [ "Q9NQG6-1", "Human MIEF1 recruits Drp1 to mitochondrial outer membranes and promotes mitochondrial fusion rather than fission.", "The EMBO journal", "2011 Jun 24", "Zhao J, Liu T, Jin S, Wang X, Qu M, Uhlen P, Tomilin N, Shupliakov O, Lendahl U, Nister M", "protein_xref_pubmed", "21701560", "protein_xref_refseq", "NP_001291493" ], [ "Q9NNZ3-1", "New genetic associations detected in a host response study to hepatitis B vaccine.", "Genes and immunity", "2010 Apr", "Davila S, Froeling FE, Tan A, Bonnard C, Boland GJ, Snippe H, Hibberd ML, Seielstad M", "protein_xref_pubmed", "20237496", "protein_xref_refseq", "NP_001294909" ], [ "Q8N6Y1-1", "PCDH20 functions as a tumour-suppressor gene through antagonizing the Wnt/beta-catenin signalling pathway in hepatocellular carcinoma.", "Journal of viral hepatitis", "2015 Feb", "Lv J, Zhu P, Yang Z, Li M, Zhang X, Cheng J, Chen X, Lu F", "protein_xref_pubmed", "24910204", "protein_xref_refseq", "NP_073754" ], [ "Q6ZMR5-1", "Modification of risk, but not survival of esophageal cancer patients by esophageal cancer-related gene 1 Arg290Gln polymorphism: a case-control study and meta-analysis.", "Journal of gastroenterology and hepatology", "2013 Nov", "Umar M, Upadhyay R, Kumar S, Ghoshal UC, Mittal B", "protein_xref_pubmed", "23869757", "protein_xref_refseq", "NP_872412" ], [ "Q9NRY4-1", "Ubiquitin ligase TRIM65 promotes colorectal cancer metastasis by targeting ARHGAP35 for protein degradation.", "Oncogene", "2019 Sep", "Chen D, Li Y, Zhang X, Wu H, Wang Q, Cai J, Cui Y, Liu H, Lan P, Wang J, Yang Z, Wang L", "protein_xref_pubmed", "31332286", "protein_xref_refseq", "NP_004482" ], [ "P12235-1", "Site-specific acetylation of adenine nucleotide translocase 1 at lysine 23 in human muscle.", "Analytical biochemistry", "2021 Oct 1", "Finlayson J, Barakati N, Langlais PR, Funk J, Zapata Bustos R, Coletta DK, Luo M, Willis WT, Mandarino LJ", "protein_xref_pubmed", "34332952", "protein_xref_refseq", "NP_001142" ], [ "Q14160-1", "Human scribble (Vartul) is targeted for ubiquitin-mediated degradation by the high-risk papillomavirus E6 proteins and the E6AP ubiquitin-protein ligase.", "Molecular and cellular biology", "2000 Nov", "Nakagawa S, Huibregtse JM", "protein_xref_pubmed", "11027293", "protein_xref_refseq", "NP_874365" ], [ "Q8TEY5-1", "MSC-AS1 knockdown inhibits cell growth and temozolomide resistance by regulating miR-373-3p/CPEB4 axis in glioma through PI3K/Akt pathway.", "Molecular and cellular biochemistry", "2021 Feb", "Li C, Feng S, Chen L", "protein_xref_pubmed", "33106913", "protein_xref_refseq", "NP_001242907" ], [ "P20749-1", "PCAT1 induced by transcription factor YY1 promotes cholangiocarcinoma proliferation, migration and invasion by sponging miR-216a-3p to up-regulate oncogene BCL3.", "Biological chemistry", "2021 Jan 27", "Sun D, Zhao Y, Wang W, Guan C, Hu Z, Liu L, Jiang X", "protein_xref_pubmed", "33544468", "protein_xref_refseq", "NP_005169" ], [ "P10632-1", "Roles of CYP3A4, CYP3A5 and CYP2C8 drug-metabolizing enzymes in cellular cytostatic resistance.", "Chemico-biological interactions", "2021 May 1", "Hofman J, Vagiannis D, Chen S, Guo L", "protein_xref_pubmed", "33775687", "protein_xref_refseq", "NP_001185782" ], [ "O43462-1", "MBTPS2, a membrane bound protease, underlying several distinct skin and bone disorders.", "Journal of translational medicine", "2021 Mar 20", "Caengprasath N, Theerapanon T, Porntaveetus T, Shotelersuk V", "protein_xref_pubmed", "33743732", "protein_xref_refseq", "NP_056968" ], [ "P41240-1", "Depletion of Csk preferentially reduces the protein level of LynA in a Cbl-dependent manner in cancer cells.", "Scientific reports", "2020 May 6", "Kuga T, Yamane Y, Hayashi S, Taniguchi M, Yamaguchi N, Yamagishi N", "protein_xref_pubmed", "32376886", "protein_xref_refseq", "NP_001120662" ], [ "Q9BRD0-1", "A polygenic basis for four classical Fredrickson hyperlipoproteinemia phenotypes that are characterized by hypertriglyceridemia.", "Human molecular genetics", "2009 Nov 1", "Hegele RA, Ban MR, Hsueh N, Kennedy BA, Cao H, Zou GY, Anand S, Yusuf S, Huff MW, Wang J", "protein_xref_pubmed", "19656773", "protein_xref_refseq", "NP_001153208" ], [ "Q9NZQ7-1", "Tumor-associated B7-H1 promotes T-cell apoptosis: a potential mechanism of immune evasion.", "Nature medicine", "2002 Aug", "Dong H, Strome SE, Salomao DR, Tamura H, Hirano F, Flies DB, Roche PC, Lu J, Zhu G, Tamada K, Lennon VA, Celis E, Chen L", "protein_xref_pubmed", "12091876", "protein_xref_refseq", "NP_001254635" ], [ "Q9NRR4-1", "p38 MAPK-mediated loss of nuclear RNase III enzyme Drosha underlies amyloid beta-induced neuronal stress in Alzheimer's disease.", "Aging cell", "2021 Oct", "Xu H, Liu X, Li W, Xi Y, Su P, Meng B, Shao X, Tang B, Yang Q, Mao Z", "protein_xref_pubmed", "34528746", "protein_xref_refseq", "NP_001093882" ], [ "O95319-1", "LncRNA RHPN1-AS1 promotes the progression of nasopharyngeal carcinoma by targeting CELF2 expression.", "Experimental and molecular pathology", "2021 Oct", "Zhao Y, Zhou H, Dong W", "protein_xref_pubmed", "34358519", "protein_xref_refseq", "NP_001313271" ], [ "O43665-3", "Experimental colitis promotes sustained, sex-dependent, T-cell-associated neuroinflammation and parkinsonian neuropathology.", "Acta neuropathologica communications", "2021 Aug 19", "Houser MC, Caudle WM, Chang J, Kannarkat GT, Yang Y, Kelly SD, Oliver D, Joers V, Shannon KM, Keshavarzian A, Tansey MG", "protein_xref_pubmed", "34412704", "protein_xref_refseq", "NP_001005339" ], [ "Q6ZN28-1", "The Prognostic Significance of MACC1 Expression in Breast Cancer and Its Relationship to Immune Cells in the Tumor Microenvironment and Patient Survival.", "Medicina (Kaunas, Lithuania)", "2021 Sep 5", "Ali DA, El-Guindy DM, Elrashidy MA, Sabry NM, Kabel AM, Gaber RA, Ibrahim RR, Samy SM, Shalaby MM, Salama SA, Abdelhai D", "protein_xref_pubmed", "34577857", "protein_xref_refseq", "NP_877439" ], [ "Q99467-1", "CD150 and CD180 are negative regulators of IL-10 expression and secretion in chronic lymphocytic leukemia B cells.", "Neoplasma", "2021 Jul", "Shcherbina V, Gordiienko I, Shlapatska L, Gluzman D, Sidorenko S", "protein_xref_pubmed", "33904315", "protein_xref_refseq", "NP_005573" ], [ "P17516-1", "Polymorphisms in AKR1C4 and HSD3B2 and differences in serum DHEAS and progesterone are associated with paranoid ideation during mania or hypomania in bipolar disorder.", "European neuropsychopharmacology : the journal of the European College of Neuropsychopharmacology", "2012 Sep", "Johansson AG, Nikamo P, Schalling M, Landen M", "protein_xref_pubmed", "22356824", "protein_xref_refseq", "NP_001809" ] ] }, "readme": "Name\n - Human Protein Citations (RefSeq)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-09-06T14:06:38.983152\n\nModified on\n - 2022-01-19T13:30:40.606530\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Citations (RefSeq) datasets contains human [taxid:9606] UniProtKB accessions mapped to publication information (PMID, title, journal name, publication, date, authors of corresponding RefSeq accessions). The dataset is derived from NCBI RefSeq Release 96, September 9, 2019. If you use this dataset please provide proper attribution to NCBI RefSeq and GlyGen. \n\nDescription Domain\n Keywords\n - PMID\n - journal\n - citations\n - authors\n - RefSeq\n - PubMed\n\n Pipeline Steps\n - Step-1: The script parses the NCBI RefSeq gpff files to extract the publication information. The script also maps RefSeq accessions to the UniProtKB Canonical accessions. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: human_protein_blacklisted_pmids_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/compiled/human_protein_blacklisted_pmids_uniprotkb.csv\n Name: human_protein_function_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_function_refseq.csv\n Name: human_protein_xref_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_xref_refseq.csv\n Output Subdomain\n Name: human_protein_citations_refseq.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_citations_refseq.csv\n Name: human_protein_citations_refseq.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_citations_refseq.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"15883\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"56289\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"2472\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"5472\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"56052\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"56293\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"17820\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_citations_refseq.csv" }