{ "bcoid": "GLY_000033", "title": "Human Protein Information (UniProtKB)", "description": "The Human Protein Information dataset contains human [taxid:9606] UniProtKB canonical accessions with ...", "filename": "human_protein_info_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Information", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q9HB96-1...", "FANCE_HUMAN..." ], [ "Q9BZW8-1...", "CD244_HUMAN..." ] ], "headers": [ "uniprotkb_ca...", "uniprotkb_id..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "uniprotkb_id" }, { "type": "string", "label": "uniprotkb_protein_mass" }, { "type": "string", "label": "uniprotkb_protein_length" } ], [ "Q9HB96-1", "FANCE_HUMAN", "58711", "536" ], [ "Q9BZW8-1", "CD244_HUMAN", "41616", "370" ], [ "O60359-1", "CCG3_HUMAN", "35549", "315" ], [ "P35251-1", "RFC1_HUMAN", "128255", "1148" ], [ "A0A2R8YCJ5-1", "SIM41_HUMAN", "9345", "93" ], [ "Q9H161-1", "ALX4_HUMAN", "44241", "411" ], [ "Q6UVK1-1", "CSPG4_HUMAN", "250537", "2322" ], [ "P41134-1", "ID1_HUMAN", "16133", "155" ], [ "Q30KQ1-1", "DB133_HUMAN", "7213", "61" ], [ "Q8N239-1", "KLH34_HUMAN", "70612", "644" ], [ "A6NNY8-1", "UBP27_HUMAN", "49630", "438" ], [ "Q9H607-1", "OCEL1_HUMAN", "29404", "264" ], [ "A0FGR9-1", "ESYT3_HUMAN", "100035", "886" ], [ "Q3SXP7-1", "SHSL1_HUMAN", "22573", "199" ], [ "Q8NGF1-1", "O52R1_HUMAN", "34943", "315" ], [ "Q96EN9-1", "REX1B_HUMAN", "22599", "201" ], [ "P23497-1", "SP100_HUMAN", "100417", "879" ], [ "Q9NPH0-1", "PPA6_HUMAN", "48886", "428" ], [ "Q9H9L3-1", "I20L2_HUMAN", "39154", "353" ], [ "Q5GAN6-1", "RNS10_HUMAN", "24008", "216" ], [ "Q96AK3-1", "ABC3D_HUMAN", "46598", "386" ], [ "Q5VY09-1", "IER5_HUMAN", "33704", "327" ], [ "Q969J2-1", "ZKSC4_HUMAN", "61579", "545" ], [ "Q15545-1", "TAF7_HUMAN", "40259", "349" ], [ "P43631-1", "KI2S2_HUMAN", "33502", "304" ], [ "O76009-1", "KT33A_HUMAN", "45940", "404" ], [ "P0CG42-1", "F157B_HUMAN", "43129", "384" ], [ "Q70EK8-1", "UBP53_HUMAN", "120806", "1073" ], [ "A0A075B710-1", "A0A075B710_HUMAN", "2204", "21" ], [ "P35659-1", "DEK_HUMAN", "42674", "375" ], [ "Q9UBE0-1", "SAE1_HUMAN", "38450", "346" ], [ "Q8NFJ8-1", "BHE22_HUMAN", "36997", "381" ], [ "Q9NZP2-1", "OR6C2_HUMAN", "35178", "312" ], [ "Q8TEJ3-1", "SH3R3_HUMAN", "92776", "882" ], [ "Q5T7P3-1", "LCE1B_HUMAN", "11626", "118" ], [ "Q8N1L9-1", "BATF2_HUMAN", "29398", "274" ], [ "P10606-1", "COX5B_HUMAN", "13696", "129" ], [ "O95661-1", "DIRA3_HUMAN", "25861", "229" ], [ "E0CX11-1", "STMP1_HUMAN", "5265", "47" ], [ "O60341-1", "KDM1A_HUMAN", "92903", "852" ], [ "O60635-1", "TSN1_HUMAN", "26301", "241" ], [ "Q5SRN2-1", "TSBP1_HUMAN", "61626", "563" ], [ "P43115-1", "PE2R3_HUMAN", "43310", "390" ], [ "P08670-1", "VIME_HUMAN", "53652", "466" ], [ "Q8WZ04-1", "TOMT_HUMAN", "32155", "291" ], [ "O94830-1", "DDHD2_HUMAN", "81032", "711" ], [ "P15882-1", "CHIN_HUMAN", "53172", "459" ], [ "A8MUA0-1", "YB057_HUMAN", "37841", "341" ], [ "P0DPI3-1", "CENL2_HUMAN", "29887", "272" ], [ "Q92918-1", "M4K1_HUMAN", "91296", "833" ], [ "P17509-1", "HXB6_HUMAN", "25432", "224" ], [ "Q96M19-1", "CL067_HUMAN", "18185", "166" ], [ "Q86YL5-1", "TDRP_HUMAN", "20403", "185" ], [ "A0A2R8Y5M8-1", "A0A2R8Y5M8_HUMAN", "28698", "258" ], [ "O43175-1", "SERA_HUMAN", "56651", "533" ], [ "P41225-1", "SOX3_HUMAN", "45210", "446" ], [ "P29218-1", "IMPA1_HUMAN", "30189", "277" ], [ "P09958-1", "FURIN_HUMAN", "86678", "794" ], [ "Q8NEQ5-1", "CA162_HUMAN", "16886", "155" ], [ "Q99965-1", "ADAM2_HUMAN", "82457", "735" ], [ "Q9Y5Z0-1", "BACE2_HUMAN", "56180", "518" ], [ "Q9ULU4-1", "PKCB1_HUMAN", "131692", "1186" ], [ "Q96FL8-1", "S47A1_HUMAN", "61922", "570" ], [ "Q9H015-1", "S22A4_HUMAN", "62155", "551" ], [ "Q15762-1", "CD226_HUMAN", "38614", "336" ], [ "Q9BQA9-1", "CYBC1_HUMAN", "20774", "187" ], [ "Q7L7L0-1", "H2A3_HUMAN", "14121", "130" ], [ "A6NM62-1", "LRC53_HUMAN", "140742", "1247" ], [ "Q6IQ23-1", "PKHA7_HUMAN", "127135", "1121" ], [ "Q6NSJ5-1", "LRC8E_HUMAN", "90247", "796" ], [ "Q9H0C2-1", "ADT4_HUMAN", "35022", "315" ], [ "Q96RT6-1", "CTGE2_HUMAN", "85282", "745" ], [ "Q1RMZ1-1", "SAMTR_HUMAN", "46324", "405" ], [ "P35354-1", "PGH2_HUMAN", "68996", "604" ], [ "Q8WW34-1", "TM239_HUMAN", "21842", "195" ], [ "Q92558-1", "WASF1_HUMAN", "61652", "559" ], [ "Q9NQ40-1", "S52A3_HUMAN", "50805", "469" ], [ "Q86UU9-1", "TKN4_HUMAN", "12305", "113" ], [ "Q5SXM2-1", "SNPC4_HUMAN", "159433", "1469" ], [ "Q96MZ4-1", "F218A_HUMAN", "17021", "157" ], [ "Q96BP3-1", "PPWD1_HUMAN", "73575", "646" ], [ "Q9Y6I7-1", "WSB1_HUMAN", "47432", "421" ], [ "Q8WV24-1", "PHLA1_HUMAN", "45016", "401" ], [ "Q86WK9-1", "PAQR7_HUMAN", "39719", "346" ] ] }, "readme": "Name\n - Human Protein Information (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-01-23T17:21:05.900608\n\nModified on\n - 2020-04-10T11:27:03.338813\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Information dataset contains human [taxid:9606] UniProtKB canonical accessions with their UniProtKB entry [id/mnemonic] name and properties such as mass and length. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - UniProtKB entry id\n - UniProtKB mnemonic name\n - protein length\n - protein mass\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB entry id/mnemonic name, protein mass and length for all canonical accessions from the triplestore containing triples from nt file and extracts it into a dataset as a csv format\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_info_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_info_uniprotkb.csv\n Name: human_protein_info_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_info_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"20588\"\n Name: \"uniprotkb_id\"\n Description: \"The entry name or mnemonic identifier assigned to the protein accession that consists of up to 11 uppercase alphanumeric characters for UniProtKB/Swiss-Prot entry and up to 16 uppercase alphanumeric characters for UniProtKB/TrEMBL entry with a defined naming convention\"\n Unique Values: \"20588\"\n Name: \"uniprotkb_protein_mass\"\n Description: \"Molecular Mass of the protein in Daltons (Da)\"\n Unique Values: \"18704\"\n Name: \"uniprotkb_protein_length\"\n Description: \"Length of the protein sequence\"\n Unique Values: \"2167\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_info_uniprotkb.csv" }