{ "bcoid": "GLY_000031", "title": "Human Protein Alternative Name (UniProtKB)", "description": "The Human Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for human ...", "filename": "human_protein_altnames.csv", "filetype": "csv", "categories": { "species": "Homo sapiens", "molecule": "Protein", "tags": "Protein Alternative Names", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P30613-1...", "Pyruvate kin..." ], [ "P30613-1...", "Pyruvate kin..." ] ], "headers": [ "uniprotkb_ca...", "alternative_..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "alternative_name_full" }, { "type": "string", "label": "alternative_name_short" }, { "type": "string", "label": "ec_name" } ], [ "P30613-1", "Pyruvate kinase isozymes L/R", "", "" ], [ "P30613-1", "Pyruvate kinase 1", "", "" ], [ "P30613-1", "R-type/L-type pyruvate kinase", "", "" ], [ "P30613-1", "Red cell/liver pyruvate kinase", "", "" ], [ "Q96J66-1", "Multidrug resistance-associated protein 8", "", "" ], [ "Q96J65-1", "Multidrug resistance-associated protein 9", "", "" ], [ "P40424-1", "Homeobox protein PBX1", "", "" ], [ "P40424-1", "Homeobox protein PRL", "", "" ], [ "P40425-1", "Protein G17", "", "" ], [ "P40425-1", "Homeobox protein PBX2", "", "" ], [ "P40426-1", "Homeobox protein PBX3", "", "" ], [ "P40429-1", "Large ribosomal subunit protein uL13", "", "" ], [ "P40429-1", "23 kDa highly basic protein", "", "" ], [ "H0YL14-1", "Herpes virus UL25-binding protein", "", "" ], [ "Q5VVP1-1", "Protein FAM75A6", "", "" ], [ "A6NIR3-1", "Centaurin-gamma-like family member 2", "", "" ], [ "Q9Y5S9-1", "Binder of OVCA1-1", "BOV-1", "" ], [ "Q9Y5S9-1", "Ribonucleoprotein RBM8A", "", "" ], [ "Q9Y5S9-1", "RNA-binding motif protein 8A", "", "" ], [ "Q9Y5S9-1", "RNA-binding protein Y14", "", "" ], [ "P19075-1", "Tumor-associated antigen CO-029", "", "" ], [ "P19075-1", "Transmembrane 4 superfamily member 3", "", "" ], [ "Q99519-1", "Lysosomal sialidase", "", "" ], [ "Q99519-1", "Acetylneuraminyl hydrolase", "", "" ], [ "Q99519-1", "N-acetyl-alpha-neuraminidase 1", "", "" ], [ "Q99519-1", "G9 sialidase", "", "" ], [ "O15417-1", "Long CAG trinucleotide repeat-containing gene 79 protein", "", "" ], [ "Q96RU7-1", "p65-interacting inhibitor of NF-kappa-B", "", "" ], [ "Q96RU7-1", "SINK", "", "" ], [ "Q96RU7-1", "Neuronal cell death-inducible putative kinase", "", "" ], [ "Q96RU3-1", "Formin-binding protein 17", "hFBP17", "" ], [ "Q96RU2-1", "Ubiquitin thioesterase 28", "", "" ], [ "Q96RU2-1", "Deubiquitinating enzyme 28", "", "" ], [ "Q96RU2-1", "Ubiquitin-specific-processing protease 28", "", "" ], [ "Q96RU8-1", "G-protein-coupled receptor-induced gene 2 protein", "GIG-2", "" ], [ "Q96RU8-1", "SKIP1", "", "" ], [ "P16520-1", "Transducin beta chain 3", "", "" ], [ "Q9Y296-1", "TRS23 homolog", "", "" ], [ "Q9Y296-1", "Hematopoietic stem/progenitor cell protein 172", "", "" ], [ "Q9Y296-1", "Synbindin", "", "" ], [ "Q9Y297-1", "F-box and WD repeats protein beta-TrCP", "", "" ], [ "Q9Y297-1", "pIkappaBalpha-E3 receptor subunit", "", "" ], [ "Q9Y297-1", "E3RSIkappaB", "", "" ], [ "Q9Y297-1", "Epididymis tissue protein Li 2a", "", "" ], [ "Q9Y294-1", "CCG1-interacting factor A", "CIA", "" ], [ "Q9Y294-1", "CCG1-interacting factor A", "hCIA", "" ], [ "Q9Y294-1", "Anti-silencing function protein 1 homolog A", "hAsf1", "" ], [ "Q9Y294-1", "Anti-silencing function protein 1 homolog A", "hAsf1a", "" ], [ "Q9Y295-1", "Neural precursor cell expressed developmentally down-regulated protein 3", "NEDD-3", "" ], [ "Q9Y295-1", "Translation factor GTPase DRG1", "TRAFAC GTPase DRG1", "3.6.5.-" ], [ "Q6ICB4-1", "27 kDa inositol polyphosphate phosphatase interacting protein B", "IPIP27B", "" ], [ "Q6ICB4-1", "PH domain-containing endocytic trafficking adaptor 2", "", "" ], [ "Q6ICB0-1", "PPPDE peptidase domain-containing protein 2", "", "" ], [ "Q6ICB0-1", "Polyubiquitinated substrate transporter", "POST", "" ], [ "P17693-1", "MHC class I antigen G", "", "" ], [ "P17693-1", "HLA G antigen", "", "" ], [ "O00507-1", "Ubiquitin-specific-processing protease FAF-Y", "", "" ], [ "O00507-1", "Ubiquitin thioesterase FAF-Y", "", "" ], [ "O00507-1", "Ubiquitin-specific protease 9, Y chromosome", "", "" ], [ "O00507-1", "Fat facets protein-related, Y-linked", "", "" ], [ "O00507-1", "Deubiquitinating enzyme FAF-Y", "", "" ], [ "O00505-1", "Importin alpha Q2", "Qip2", "" ], [ "O00505-1", "SRP1-gamma", "", "" ], [ "O00505-1", "Karyopherin subunit alpha-3", "", "" ], [ "O00501-1", "Transmembrane protein deleted in VCFS", "TMDVCF", "" ], [ "Q8IYD2-1", "Substitute for delta-EGFR expression 1", "S-delta-E1", "" ], [ "Q8IYD1-1", "G1 to S phase transition protein 2 homolog", "", "" ], [ "Q8IYD8-1", "Fanconi anemia-associated polypeptide of 250 kDa", "FAAP250", "" ], [ "Q8IYD8-1", "ATP-dependent RNA helicase FANCM", "", "" ], [ "Q8IYD8-1", "Protein Hef ortholog", "", "" ], [ "P24903-1", "CYPIIF1", "", "" ], [ "Q8N7C0-1", "BK channel auxiliary gamma subunit LRRC52", "", "" ], [ "Q9NV23-1", "Augmented in rheumatoid arthritis 1", "AURA1", "" ], [ "Q9NV23-1", "Oleoyl-ACP hydrolase", "", "" ], [ "Q9NV23-1", "Thioesterase II", "", "" ], [ "Q9NV23-1", "Thioesterase domain-containing protein 1", "", "" ], [ "Q9NV23-1", "Thioesterase 2", "TE2", "" ], [ "Q2M238-1", "RNA polymerase I transcription factor homolog pseudogene 1", "", "" ], [ "Q9UQ26-6", "Rab-3-interacting molecule 2", "RIM 2", "" ], [ "Q9UQ26-6", "Rab-3-interacting protein 3", "", "" ], [ "Q5HYW3-1", "Retrotransposon gag domain-containing protein 4", "", "" ], [ "Q9Y5J9-1", "DDP-like protein", "", "" ], [ "Q9Y5J9-1", "Deafness dystonia protein 2", "", "" ], [ "P45984-1", "Stress-activated protein kinase 1a", "SAPK1a", "" ] ] }, "readme": "Name\n - Human Protein Alternative Name (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2019-01-23T17:21:05.898547\n\nModified on\n - 2020-04-10T11:26:42.330163\n\nCreated by\n - Jeet Vora [jeetvora@gwu.edu], Rahi Navelkar [rsn13@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Xavier Holmes [xavierh@email.gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Maria Martin [martin@ebi.ac.uk], Preethi Vasudev [pvasudev@ebi.ac.uk]\n\nChecksum\n - \n\nUsability Domain\n - The Human Protein Alternative Name (UniProtKB) dataset contains UniProtKB alternative names for human [taxid:9606] proteins. The dataset is derived from 2019-09 UniProtKB release. If you use this dataset please provide proper attribution to EMBL-EBI-UniProtKB and GlyGen\n\nDescription Domain\n Keywords\n - protein alternative name\n - UniProtKB\n\n Pipeline Steps\n - Step-1: The script loads the UniProtKB alternative names for protein accessions from the triplestore containing triples from nt file and extracts the alternative protein names into csv dataset file\n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: https://www.python.org/download/releases/2.7.5/\n\nI/O Domain\n Input Subdomain\n Name: uniprot-proteome-homo-sapiens.nt\n URI: https:/data.glygen.org/ln2downloads/ebi/2021_04/uniprot-proteome-homo-sapiens.nt\n Output Subdomain\n Name: human_protein_altnames.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_altnames.csv\n Name: human_protein_altnames.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_protein_altnames.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"14602\"\n Name: \"alternative_name_full\"\n Description: \"Alternative full name of the protein in the UniProtKB database\"\n Unique Values: \"31278\"\n Name: \"alternative_name_short\"\n Description: \"Alternative short name of the protein in UniProtKB database\"\n Unique Values: \"9344\"\n Name: \"ec_name\"\n Description: \"Enzyme Commision name assigned to an enzyme by the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (IUBMB)\"\n Unique Values: \"330\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/human_protein_altnames.csv" }