{ "bcoid": "GLY_000562", "title": "Rat Proteoform Glycosylation Citations (UniProtKB)", "description": "", "filename": "rat_proteoform_citations_glycosylation_uniprotkb.csv", "filetype": "csv", "categories": { "species": "Rattus norvegicus", "molecule": "Proteoform", "tags": "Citation Glycosylation Sites (UniProtKB)", "file_type": "csv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "P07725-1...", "Glycosylatio..." ], [ "Q765A7-1...", "Site-specifi..." ] ], "headers": [ "uniprotkb_ca...", "title..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "title" }, { "type": "string", "label": "journal_name" }, { "type": "string", "label": "publication_date" }, { "type": "string", "label": "authors" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" }, { "type": "string", "label": "glytoucan_ac" } ], [ "P07725-1", "Glycosylation sites identified by detection of glycosylated amino acids released from Edman degradation: the identification of Xaa-Pro-Xaa-Xaa as a motif for Thr-O-glycosylation.", "Biochemical and biophysical research communications", "1991 Aug 15", "Gooley AA, Classon BJ, Marschalek R, Williams KL", "protein_xref_pubmed", "1908233", "protein_xref_uniprotkb_gly", "P07725", "" ], [ "Q765A7-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q765A7", "" ], [ "Q6AY41-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q6AY41", "" ], [ "P15087-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P15087", "" ], [ "Q9JJW1-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q9JJW1", "" ], [ "P19490-1", "Crystal structure of the glutamate receptor GluA1 N-terminal domain.", "The Biochemical journal", "2011 Sep 1", "Yao G, Zong Y, Gu S, Zhou J, Xu H, Mathews II, Jin R", "protein_xref_pubmed", "21639859", "protein_xref_uniprotkb_gly", "P19490", "" ], [ "Q63273-1", "Crystal structures of the glutamate receptor ion channel GluK3 and GluK5 amino-terminal domains.", "Journal of molecular biology", "2010 Dec 10", "Kumar J, Mayer ML", "protein_xref_pubmed", "20951142", "protein_xref_uniprotkb_gly", "Q63273", "" ], [ "P07340-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P07340", "" ], [ "O54767-1", "Structural conservation of mouse and rat zona pellucida glycoproteins. Probing the native rat zona pellucida proteome by mass spectrometry.", "Biochemistry", "2005 Dec 20", "Boja ES, Hoodbhoy T, Garfield M, Fales HM", "protein_xref_pubmed", "16342937", "protein_xref_uniprotkb_gly", "O54767", "" ], [ "P10252-1", "Crystal structure and binding properties of the CD2 and CD244 (2B4)-binding protein, CD48.", "The Journal of biological chemistry", "2006 Sep 29", "Evans EJ, Castro MA, O'Brien R, Kearney A, Walsh H, Sparks LM, Tucknott MG, Davies EA, Carmo AM, van der Merwe PA, Stuart DI, Jones EY, Ladbury JE, Ikemizu S, Davis SJ", "protein_xref_pubmed", "16803907", "protein_xref_uniprotkb_gly", "P10252", "" ], [ "P14740-1", "Crystal structures of DPP-IV (CD26) from rat kidney exhibit flexible accommodation of peptidase-selective inhibitors.", "Biochemistry", "2006 Jun 20", "Longenecker KL, Stewart KD, Madar DJ, Jakob CG, Fry EH, Wilk S, Lin CW, Ballaron SJ, Stashko MA, Lubben TH, Yong H, Pireh D, Pei Z, Basha F, Wiedeman PE, von Geldern TW, Trevillyan JM, Stoll VS", "protein_xref_pubmed", "16768443", "protein_xref_uniprotkb_gly", "P14740", "" ], [ "Q6AYA5-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q6AYA5", "" ], [ "P23385-1", "Structural basis of glutamate recognition by a dimeric metabotropic glutamate receptor.", "Nature", "2000 Oct 26", "Kunishima N, Shimada Y, Tsuji Y, Sato T, Yamamoto M, Kumasaka T, Nakanishi S, Jingami H, Morikawa K", "protein_xref_pubmed", "11069170", "protein_xref_uniprotkb_gly", "P23385", "" ], [ "O35764-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "O35764", "" ], [ "P84039-1", "Characterization of nucleotide pyrophosphatase-5 as an oligomannosidic glycoprotein in rat brain.", "Biochemical and biophysical research communications", "2003 Sep 5", "Ohe Y, Ohnishi H, Okazawa H, Tomizawa K, Kobayashi H, Okawa K, Matozaki T", "protein_xref_pubmed", "12927778", "protein_xref_uniprotkb_gly", "P84039", "" ], [ "O35112-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "O35112", "" ], [ "P15693-1", "Crystal structure of rat intestinal alkaline phosphatase--role of crown domain in mammalian alkaline phosphatases.", "Journal of structural biology", "2013 Nov", "Ghosh K, Mazumder Tagore D, Anumula R, Lakshmaiah B, Kumar PP, Singaram S, Matan T, Kallipatti S, Selvam S, Krishnamurthy P, Ramarao M", "protein_xref_pubmed", "24076154", "protein_xref_uniprotkb_gly", "P15693", "" ], [ "P12939-1", "Discovery and confirmation of O-GlcNAcylated proteins in rat liver mitochondria by combination of mass spectrometry and immunological methods.", "PloS one", "2013", "Cao W, Cao J, Huang J, Yao J, Yan G, Xu H, Yang P", "protein_xref_pubmed", "24098488", "protein_xref_uniprotkb_gly", "P12939", "" ], [ "Q62765-1", "Structural characterization of recombinant soluble rat neuroligin 1: mapping of secondary structure and glycosylation by mass spectrometry.", "Biochemistry", "2004 Feb 17", "Hoffman RC, Jennings LL, Tsigelny I, Comoletti D, Flynn RE, Sudhof TC, Taylor P", "protein_xref_pubmed", "14769026", "protein_xref_uniprotkb_gly", "Q62765", "" ], [ "Q5FVQ0-1", "ZIP8 is an iron and zinc transporter whose cell-surface expression is up-regulated by cellular iron loading.", "The Journal of biological chemistry", "2012 Oct 5", "Wang CY, Jenkitkasemwong S, Duarte S, Sparkman BK, Shawki A, Mackenzie B, Knutson MD", "protein_xref_pubmed", "22898811", "protein_xref_uniprotkb_gly", "Q5FVQ0", "" ], [ "P01830-1", "Rat brain Thy-1 glycoprotein. 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Probing the native rat zona pellucida proteome by mass spectrometry.", "Biochemistry", "2005 Dec 20", "Boja ES, Hoodbhoy T, Garfield M, Fales HM", "protein_xref_pubmed", "16342937", "protein_xref_uniprotkb_gly", "O54766", "" ], [ "O70244-1", "Amnionless-mediated glycosylation is crucial for cell surface targeting of cubilin in renal and intestinal cells.", "Scientific reports", "2018 Feb 5", "Udagawa T, Harita Y, Miura K, Mitsui J, Ode KL, Morishita S, Urae S, Kanda S, Kajiho Y, Tsurumi H, Ueda HR, Tsuji S, Saito A, Oka A", "protein_xref_pubmed", "29402915", "protein_xref_uniprotkb_gly", "O70244", "" ], [ "P25122-1", "N-Linked glycan site occupancy impacts the distribution of a potassium channel in the cell body and outgrowths of neuronal-derived cells.", "Biochimica et biophysica acta", "2014 Jan", "Hall MK, Weidner DA, Bernetski CJ, Schwalbe RA", "protein_xref_pubmed", "24161696", "protein_xref_uniprotkb_gly", "P25122", "" ], [ "Q80Z70-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q80Z70", "" ], [ "Q99ML5-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q99ML5", "" ], [ "P48284-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P48284", "" ], [ "P15800-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P15800", "" ], [ "P97710-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P97710", "" ], [ "P47866-1", "The corticotropin-releasing factor receptor type 2a contains an N-terminal pseudo signal peptide.", "The Journal of biological chemistry", "2006 Aug 25", "Rutz C, Renner A, Alken M, Schulz K, Beyermann M, Wiesner B, Rosenthal W, Schulein R", "protein_xref_pubmed", "16766521", "protein_xref_uniprotkb_gly", "P47866", "" ], [ "P19491-1", "Subunit-selective N-terminal domain associations organize the formation of AMPA receptor heteromers.", "The EMBO journal", "2011 Mar 2", "Rossmann M, Sukumaran M, Penn AC, Veprintsev DB, Babu MM, Greger IH", "protein_xref_pubmed", "21317873", "protein_xref_uniprotkb_gly", "P19491", "" ], [ "O35795-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "O35795", "" ], [ "P13721-1", "Enzymatic basis for N-glycan sialylation: structure of rat alpha2,6-sialyltransferase (ST6GAL1) reveals conserved and unique features for glycan sialylation.", "The Journal of biological chemistry", "2013 Nov 29", "Meng L, Forouhar F, Thieker D, Gao Z, Ramiah A, Moniz H, Xiang Y, Seetharaman J, Milaninia S, Su M, Bridger R, Veillon L, Azadi P, Kornhaber G, Wells L, Montelione GT, Woods RJ, Tong L, Moremen KW", "protein_xref_pubmed", "24155237", "protein_xref_uniprotkb_gly", "P13721", "" ], [ "P05011-1", "Structure and expression in Escherichia coli of a cloned rat interferon-alpha gene.", "Nucleic acids research", "1984 Jan 25", "Dijkema R, Pouwels P, de Reus A, Schellekens H", "protein_xref_pubmed", "6320120", "protein_xref_uniprotkb_gly", "P05011", "" ], [ "P42264-1", "Crystal structures of the glutamate receptor ion channel GluK3 and GluK5 amino-terminal domains.", "Journal of molecular biology", "2010 Dec 10", "Kumar J, Mayer ML", "protein_xref_pubmed", "20951142", "protein_xref_uniprotkb_gly", "P42264", "" ], [ "P42264-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P42264", "" ], [ "P97685-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P97685", "" ], [ "Q68FQ2-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q68FQ2", "" ], [ "O70352-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "O70352", "" ], [ "P27615-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P27615", "" ], [ "P09951-1", "Mapping sites of O-GlcNAc modification using affinity tags for serine and threonine post-translational modifications.", "Molecular & cellular proteomics : MCP", "2002 Oct", "Wells L, Vosseller K, Cole RN, Cronshaw JM, Matunis MJ, Hart GW", "protein_xref_pubmed", "12438562", "protein_xref_uniprotkb_gly", "P09951", "" ], [ "P70627-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "P70627", "" ], [ "Q6Q629-1", "Site-specific glycan-peptide analysis for determination of N-glycoproteome heterogeneity.", "Journal of proteome research", "2013 Dec 6", "Parker BL, Thaysen-Andersen M, Solis N, Scott NE, Larsen MR, Graham ME, Packer NH, Cordwell SJ", "protein_xref_pubmed", "24090084", "protein_xref_uniprotkb_gly", "Q6Q629", "" ], [ "P55067-1", "Cloning and primary structure of neurocan, a developmentally regulated, aggregating chondroitin sulfate proteoglycan of brain.", "The Journal of biological chemistry", "1992 Sep 25", "Rauch U, Karthikeyan L, Maurel P, Margolis RU, Margolis RK", "protein_xref_pubmed", "1326557", "protein_xref_uniprotkb_gly", "P55067", "" ] ] }, "readme": "Name\n - Rat Proteoform Glycosylation Citations (UniProtKB)\n\nVersion\n - 1.11.2\n\nCreated on\n - 2021-06-03T16:35:03.994318\n\nModified on\n - 2021-10-15T15:59:05.324610\n\nCreated by\n - [jeetvora@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - \n\nChecksum\n - \n\nDescription Domain\n Keywords\n - citations\n - glycosylation\n - UniProtKB\n\nExecution Domain\n Scripts\n\n Software Prerequisites\n\nI/O Domain\n Input Subdomain\n Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n Output Subdomain\n Name: rat_proteoform_citations_glycosylation_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_citations_glycosylation_uniprotkb.csv\n Name: rat_proteoform_citations_glycosylation_uniprotkb.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_citations_glycosylation_uniprotkb.stat.csv\n\nFields\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"179\"\n Name: \"title\"\n Description: \"Title of the published article in the journal\"\n Unique Values: \"97\"\n Name: \"journal_name\"\n Description: \"The name of the journal in which the article is published\"\n Unique Values: \"35\"\n Name: \"publication_date\"\n Description: \"Contains the full date on which the issue of the journal was published. Sourced from MEDLINE/PubMed data element(fields) description.\"\n Unique Values: \"96\"\n Name: \"authors\"\n Description: \"NA\"\n Unique Values: \"97\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"1\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"97\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"1\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"179\"\n Name: \"glytoucan_ac\"\n Description: \"Unique accession assigned to the registered glycan structure in GlyTouCan database\"\n Unique Values: \"1\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/rat_proteoform_citations_glycosylation_uniprotkb.csv" }