{ "bcoid": "GLY_000555", "title": "UniProtKB ProtVista Mapping", "description": "The file includes glycan annotation (GlyTouCan ac and ChEBI Id) for the protein + site included in UniProtKB(https://uniprot.org/) ...", "filename": "protein_glygen_uniprotkb_protvista_mapping.tsv", "filetype": "tsv", "categories": { "molecule": "Protein", "tags": "glycan", "file_type": "tsv", "status": "Reviewed", "scope": "internal" }, "minitable": { "content": [ [ "Q7Z589...", "Q7Z589-1..." ], [ "Q7Z589...", "Q7Z589-1..." ] ], "headers": [ "uniprotkb_ac...", "uniprotkb_ca..." ], "colwidth": [ "40%", "20%" ] }, "sampledata": { "type": "table", "data": [ [ { "type": "string", "label": "uniprotkb_ac" }, { "type": "string", "label": "uniprotkb_canonical_ac" }, { "type": "string", "label": "glycosylation_site_uniprotkb" }, { "type": "string", "label": "amino_acid" }, { "type": "string", "label": "saccharide" }, { "type": "string", "label": "glycosylation_type" }, { "type": "string", "label": "chebi_id" }, { "type": "string", "label": "tax_id" }, { "type": "string", "label": "xref_key" }, { "type": "string", "label": "xref_id" }, { "type": "string", "label": "src_xref_key" }, { "type": "string", "label": "src_xref_id" } ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_glyconnect", "1657", "protein_xref_glyconnect", "1657" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "20068230", "protein_xref_uniprotkb_gly", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "20068230", "protein_xref_glyconnect", "1657" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_oglcnac_db", "Q7Z589", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "20068230", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "31637018", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "23301498", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "29249144", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "27655845", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "28657654", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "27114449", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "21158410", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "30059200", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "29237092", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "21740066", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "29351928", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q7Z589", "Q7Z589-1", "236", "Ser", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "20305658", "protein_xref_oglcnac_db", "Q7Z589" ], [ "Q9Y287", "Q9Y287-1", "170", "Asn", "G06110VR", "N-linked", "156559", "9606", "protein_xref_glyconnect", "1403", "protein_xref_glyconnect", "1403" ], [ "Q9Y287", "Q9Y287-1", "170", "Asn", "G06110VR", "N-linked", "156559", "9606", "protein_xref_pubmed", "21752865", "protein_xref_uniprotkb_gly", "Q9Y287" ], [ "Q9Y287", "Q9Y287-1", "170", "Asn", "G06110VR", "N-linked", "156559", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "1403" ], [ "P23229", "P23229-1", "966", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_glyconnect", "1408", "protein_xref_glyconnect", "1408" ], [ "P23229", "P23229-1", "966", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "1408" ], [ "B2RXS4", "B2RXS4-1", "393", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_glyconnect", "2594", "protein_xref_glyconnect", "2594" ], [ "B2RXS4", "B2RXS4-1", "393", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "B2RXS4" ], [ "B2RXS4", "B2RXS4-1", "393", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2594" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G02815KT", "N-linked", "157637", "10090", "protein_xref_unicarbkb", "Q9QUR8", "protein_xref_unicarbkb", "Q9QUR8" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G02815KT", "N-linked", "157637", "10090", "protein_xref_pubmed", "34106099", "protein_xref_unicarbkb", "Q9QUR8" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G02815KT", "N-linked", "157637", "10090", "protein_xref_doi", "10.1039/D0MO00044B", "protein_xref_unicarbkb", "Q9QUR8" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G02815KT", "Asn", "157637", "10090", "protein_xref_unicarbkb", "Q9QUR8", "protein_xref_unicarbkb", "Q9QUR8" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G02815KT", "Asn", "157637", "10090", "protein_xref_pubmed", "34106099", "protein_xref_unicarbkb", "Q9QUR8" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G02815KT", "Asn", "157637", "10090", "protein_xref_doi", "10.1039/D0MO00044B", "protein_xref_unicarbkb", "Q9QUR8" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_glyconnect", "2702", "protein_xref_glyconnect", "2702" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2702" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_glyconnect", "2702", "protein_xref_glyconnect", "2702" ], [ "Q9QUR8", "Q9QUR8-1", "256", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2702" ], [ "P05067", "P05067-1", "659", "thr", "G43417UB", "Thr", "156560", "9606", "protein_xref_unicarbkb", "P05067", "protein_xref_unicarbkb", "P05067" ], [ "P05067", "P05067-1", "659", "thr", "G43417UB", "Thr", "156560", "9606", "protein_xref_pubmed", "22576872", "protein_xref_uniprotkb_gly", "P05067" ], [ "P05067", "P05067-1", "659", "thr", "G43417UB", "Thr", "156560", "9606", "protein_xref_pubmed", "30459171", "protein_xref_unicarbkb", "P05067" ], [ "P05067", "P05067-1", "651", "Thr", "G49108TO", "O-linked", "28009", "9606", "protein_xref_oglcnac_db", "P05067", "protein_xref_oglcnac_db", "P05067" ], [ "P05067", "P05067-1", "651", "Thr", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "22576872", "protein_xref_uniprotkb_gly", "P05067" ], [ "P05067", "P05067-1", "651", "Thr", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "21712440", "protein_xref_uniprotkb_gly", "P05067" ], [ "P05067", "P05067-1", "651", "Thr", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "28624365", "protein_xref_oglcnac_db", "P05067" ], [ "P05067", "P05067-1", "651", "Thr", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "21182826", "protein_xref_oglcnac_db", "P05067" ], [ "P05067", "P05067-1", "651", "Thr", "G49108TO", "O-linked", "28009", "9606", "protein_xref_pubmed", "31156159", "protein_xref_oglcnac_db", "P05067" ], [ "Q9CZR2", "Q9CZR2-1", "628", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_glyconnect", "2524", "protein_xref_glyconnect", "2524" ], [ "Q9CZR2", "Q9CZR2-1", "628", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2524" ], [ "P05556", "P05556-1", "481", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_glyconnect", "1414", "protein_xref_glyconnect", "1414" ], [ "P05556", "P05556-1", "481", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05556" ], [ "P05556", "P05556-1", "481", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "1414" ], [ "P57716", "P57716-1", "386", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_glyconnect", "2562", "protein_xref_glyconnect", "2562" ], [ "P57716", "P57716-1", "386", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "P57716" ], [ "P57716", "P57716-1", "386", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2562" ], [ "Q8R2Y2", "Q8R2Y2-1", "58", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_glyconnect", "2202", "protein_xref_glyconnect", "2202" ], [ "Q8R2Y2", "Q8R2Y2-1", "58", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "19349973", "protein_xref_uniprotkb_gly", "Q8R2Y2" ], [ "Q8R2Y2", "Q8R2Y2-1", "58", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2202" ], [ "P97952", "P97952-1", "93", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_glyconnect", "2720", "protein_xref_glyconnect", "2720" ], [ "P97952", "P97952-1", "93", "Asn", "G70101JE", "N-linked", "156561", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2720" ], [ "P97952", "P97952-1", "93", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_glyconnect", "2720", "protein_xref_glyconnect", "2720" ], [ "P97952", "P97952-1", "93", "Asn", "G06110VR", "N-linked", "156559", "10090", "protein_xref_pubmed", "30899004", "protein_xref_glyconnect", "2720" ], [ "P05090", "P05090-1", "65", "Asn", "G06356OH", "N-linked", "156563", "9606", "protein_xref_glyconnect", "677", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G06356OH", "N-linked", "156563", "9606", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G06356OH", "N-linked", "156563", "9606", "protein_xref_pubmed", "7918467", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G06356OH", "N-linked", "156563", "9606", "protein_xref_pubmed", "7613477", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G06356OH", "N-linked", "156563", "9606", "protein_xref_pubmed", "22171320", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G06356OH", "N-linked", "156563", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G74724QE", "N-linked", "156564", "9606", "protein_xref_glyconnect", "677", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G74724QE", "N-linked", "156564", "9606", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G74724QE", "N-linked", "156564", "9606", "protein_xref_pubmed", "7918467", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G74724QE", "N-linked", "156564", "9606", "protein_xref_pubmed", "7613477", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G74724QE", "N-linked", "156564", "9606", "protein_xref_pubmed", "22171320", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G74724QE", "N-linked", "156564", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_glyconnect", "677", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_pubmed", "7918467", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_pubmed", "7613477", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_pubmed", "22171320", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G84452RH", "N-linked", "156562", "9606", "protein_xref_pubmed", "29391424", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_glyconnect", "677", "protein_xref_glyconnect", "677" ], [ "P05090", "P05090-1", "65", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "19159218", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "7918467", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "7613477", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "22171320", "protein_xref_uniprotkb_gly", "P05090" ], [ "P05090", "P05090-1", "65", "Asn", "G70101JE", "N-linked", "156561", "9606", "protein_xref_pubmed", "29741879", "protein_xref_glyconnect", "677" ] ] }, "readme": "Name\n - UniProtKB ProtVista Mapping\n\nVersion\n - 1.11.2\n\nCreated on\n - 2021-02-26T12:11:00.289136\n\nModified on\n - 2022-01-18T12:39:08.581365\n\nCreated by\n - Rahi Navelkar [rsn13@gwu.edu], Jeet Vora [jeetvora@gwu.edu], Robel Kahsay [rykahsay@gwu.edu], Karina Martinez [karinamartinez@gwu.edu], Amanda Bell [amandab2140@gwu.edu], Jonathon Keeney [keeneyjg@gwu.edu], Millicent Quartey [mquartey@email.gwu.edu]\n\nAuthors\n - Not Applicable []\n\nChecksum\n - \n\nUsability Domain\n - The file includes glycan annotation (GlyTouCan ac and ChEBI Id) for the protein + site included in UniProtKB(https://uniprot.org/) database. \n\nDescription Domain\n Keywords\n - UniProtKB\n - Glycans\n - ChEBI ID\n - ProtVista\n\n Pipeline Steps\n - Step-1: Glycosylation annotation from input files were combined together. The glytoucan_ac was mapped to chebi_id using another input file. Additionally, two new columns uniprot_ac and tax_id were added in the output file. The following filtering rules wer applied: 1) Only those protein + site were inlcuded which are present in UniProtKB database 2) Only those rows were included where a valid ChEBI ID was present. \n\nExecution Domain\n Scripts - https://github.com/GW-HIVE/glygen-backend-integration/blob/master/pipeline/integrator/make-protein-dataset.py\n\n\n Software Prerequisites\n Name: Python\n Version: 2.7.5\n URI: \n\nI/O Domain\n Input Subdomain\n Name: glycan_masterlist.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/glycan_masterlist.csv\n Name: mouse_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_unicarbkb.csv\n Name: sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_unicarbkb.csv\n Name: rat_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_unicarbkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_unicarbkb.csv\n Name: human_proteoform_glycosylation_sites_unicarbkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_unicarbkb.csv\n Name: rat_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_glyconnect.csv\n Name: mouse_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_glyconnect.csv\n Name: sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_glyconnect.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_glyconnect.csv\n Name: human_proteoform_glycosylation_sites_gptwiki.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_gptwiki.csv\n Name: human_proteoform_glycosylation_sites_harvard.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_harvard.csv\n Name: human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_o_glcnac_mcw.csv\n Name: hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1a_proteoform_glycosylation_sites_uniprotkb.csv\n Name: human_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/human_proteoform_glycosylation_sites_uniprotkb.csv\n Name: sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov2_proteoform_glycosylation_sites_uniprotkb.csv\n Name: rat_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/rat_proteoform_glycosylation_sites_uniprotkb.csv\n Name: hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/hcv1b_proteoform_glycosylation_sites_uniprotkb.csv\n Name: sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/sarscov1_proteoform_glycosylation_sites_uniprotkb.csv\n Name: mouse_proteoform_glycosylation_sites_uniprotkb.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/mouse_proteoform_glycosylation_sites_uniprotkb.csv\n Name: glycan_xref_chebi.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/glycan_xref_chebi.csv\n Output Subdomain\n Name: protein_glygen_uniprotkb_protvista_mapping.tsv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/protein_glygen_uniprotkb_protvista_mapping.tsv\n Name: protein_glygen_uniprotkb_protvista_mapping.stat.csv\n URI: https:/data.glygen.org/ln2releases/data/v-1.12.3/reviewed/protein_glygen_uniprotkb_protvista_mapping.stat.csv\n\nFields\n Name: \"uniprotkb_ac\"\n Description: \"Accession assigned to the protein in the UniProtKB database\"\n Unique Values: \"1426\"\n Name: \"uniprotkb_canonical_ac\"\n Description: \"\"\n Unique Values: \"1426\"\n Name: \"glycosylation_site_uniprotkb\"\n Description: \"Site on the protein sequence of the UniProtKB entry where glycosylation is observed\"\n Unique Values: \"1072\"\n Name: \"amino_acid\"\n Description: \"Three letter abbreviation code of the amino acid\"\n Unique Values: \"7\"\n Name: \"saccharide\"\n Description: \"Sugar\"\n Unique Values: \"334\"\n Name: \"glycosylation_type\"\n Description: \"Type of glycosylation (N/O/C/S linked glycosylation)\"\n Unique Values: \"6\"\n Name: \"chebi_id\"\n Description: \"Entity identifier from ChEBI database \"\n Unique Values: \"334\"\n Name: \"tax_id\"\n Description: \"NCBI Taxonomy database Identifier\"\n Unique Values: \"5\"\n Name: \"xref_key\"\n Description: \"Source key associated to the xref_id\"\n Unique Values: \"11\"\n Name: \"xref_id\"\n Description: \"ID of the X-ref\"\n Unique Values: \"2617\"\n Name: \"src_xref_key\"\n Description: \"Source Xref key\"\n Unique Values: \"6\"\n Name: \"src_xref_id\"\n Description: \"Source X-ref ID\"\n Unique Values: \"2164\"", "downloadurl": "/ln2data/releases/data/v-1.12.3/reviewed/protein_glygen_uniprotkb_protvista_mapping.tsv" }